Species:

1. Allochromatium vinosum [TaxId:1049] [189416] (1 PDB entry)

   • Domains for 3myr:

     1. Domain d3myrb_: 3myr B: [181706] Other proteins in same PDB: d3myra_, d3myrc_, d3myre_, d3myrg_ automated match to d1frfl_ complexed with cl, f3s, imd, mg, nfv, sf4

     2. Domain d3myrd_: 3myr D: [181708] Other proteins in same PDB: d3myra_, d3myrc_, d3myre_, d3myrg_ automated match to d1frfl_ complexed with cl, f3s, imd, mg, nfv, sf4

     3. Domain d3myrf_: 3myr F: [181710] Other proteins in same PDB: d3myra_, d3myrc_, d3myre_, d3myrg_ automated match to d1frfl_ complexed with cl, f3s, imd, mg, nfv, sf4

     4. Domain d3myrh_: 3myr H: [181712] Other proteins in same PDB: d3myra_, d3myrc_, d3myre_, d3myrg_ automated match to d1frfl_ complexed with cl, f3s, imd, mg, nfv, sf4

2. Cupriavidus necator [TaxId:106590] [313380] (1 PDB entry)

   • Domain for 5d51:

     • Domain d5d51l_: 5d51 L: [313381] Other proteins in same PDB: d5d51s_ automated match to d5a4il_

3. Cupriavidus necator [TaxId:381666] [312466] (1 PDB entry)

   • Domains for 5aa5:

     1. Domain d5aa5c_: 5aa5 C: [313042] automated match to d3myrd_ complexed with mla, nfu, sf4

     2. Domain d5aa5e_: 5aa5 E: [312472] automated match to d3myrd_ complexed with mla, nfu, sf4

     3. Domain d5aa5g_: 5aa5 G: [312477] automated match to d3myrd_ complexed with mla, nfu, sf4

     4. Domain d5aa5i_: 5aa5 I: [312467] automated match to d3myrd_ complexed with mla, nfu, sf4

     5. Domain d5aa5k_: 5aa5 K: [312469] automated match to d3myrd_ complexed with mla, nfu, sf4

     6. Domain d5aa5l_: 5aa5 L: [312475] automated match to d3myrd_ complexed with mla, nfu, sf4

4. Escherichia coli [TaxId:1403831] [279526] (3 PDB entries)

   1. Domains for 5a4f:

      1. Domain d5a4fl_: 5a4f L: [279534] Other proteins in same PDB: d5a4fs_, d5a4ft_ automated match to d3uqyl_ complexed with cl, f3s, fco, mg, ni, sf3, sf4, so4

      2. Domain d5a4fm_: 5a4f M: [279539] Other proteins in same PDB: d5a4fs_, d5a4ft_ automated match to d3uqyl_ complexed with cl, f3s, fco, mg, ni, sf3, sf4, so4

   2. Domains for 5a4i:

      1. Domain d5a4il_: 5a4i L: [279536] Other proteins in same PDB: d5a4is_, d5a4it_ automated match to d3uqyl_ complexed with cl, f3s, fco, lmt, mg, ni, sf3, sf4, so4

      2. Domain d5a4im_: 5a4i M: [279540] Other proteins in same PDB: d5a4is_, d5a4it_ automated match to d3uqyl_ complexed with cl, f3s, fco, lmt, mg, ni, sf3, sf4, so4

   3. Domains for 5a4m:

      1. Domain d5a4ml_: 5a4m L: [279533] Other proteins in same PDB: d5a4ms_, d5a4mt_ automated match to d3uqyl_ complexed with cl, f3s, mg, nfv, sf3, sf4

      2. Domain d5a4mm_: 5a4m M: [279537] Other proteins in same PDB: d5a4ms_, d5a4mt_ automated match to d3uqyl_ complexed with cl, f3s, mg, nfv, sf3, sf4

5. Escherichia coli [TaxId:562] [195685] (5 PDB entries)

   1. Domains for 3uqy:

      1. Domain d3uqyl_: 3uqy L: [217495] Other proteins in same PDB: d3uqys_, d3uqyt_ automated match to d3uscl_ complexed with cl, f3s, f4s, fco, gol, lmt, mg, ni, sf4, so4

      2. Domain d3uqym_: 3uqy M: [217496] Other proteins in same PDB: d3uqys_, d3uqyt_ automated match to d3uscl_ complexed with cl, f3s, f4s, fco, gol, lmt, mg, ni, sf4, so4

   2. Domains for 3usc:

      1. Domain d3uscl_: 3usc L: [195687] Other proteins in same PDB: d3uscs_, d3usct_ automated match to d3myrd_ complexed with 3ni, cl, f3s, fco, li, lmt, mg, sf3, sf4, so4

      2. Domain d3uscm_: 3usc M: [195686] Other proteins in same PDB: d3uscs_, d3usct_ automated match to d3myrd_ complexed with 3ni, cl, f3s, fco, li, lmt, mg, sf3, sf4, so4

   3. Domains for 3use:

      1. Domain d3usel_: 3use L: [201106] Other proteins in same PDB: d3uses_, d3uset_ automated match to d3uscl_ complexed with 3ni, cl, f3s, f4s, fco, gol, li, lmt, mg, sf3, sf4, so4

      2. Domain d3usem_: 3use M: [195688] Other proteins in same PDB: d3uses_, d3uset_ automated match to d3myrd_ complexed with 3ni, cl, f3s, f4s, fco, gol, li, lmt, mg, sf3, sf4, so4

   4. Domains for 4ue3:

      1. Domain d4ue3l_: 4ue3 L: [268935] Other proteins in same PDB: d4ue3s_, d4ue3t_ automated match to d3uqyl_ complexed with cl, f3s, mg, nfv, sf3, sf4, so4

      2. Domain d4ue3m_: 4ue3 M: [268936] Other proteins in same PDB: d4ue3s_, d4ue3t_ automated match to d3uqyl_ complexed with cl, f3s, mg, nfv, sf3, sf4, so4

   5. Domains for 5adu:

      1. Domain d5adul_: 5adu L: [279541] Other proteins in same PDB: d5adus_, d5adut_ automated match to d3uqyl_ complexed with cl, f3s, fco, lmt, mg, ni, sf3, sf4, so4

      2. Domain d5adum_: 5adu M: [279542] Other proteins in same PDB: d5adus_, d5adut_ automated match to d3uqyl_ complexed with cl, f3s, fco, lmt, mg, ni, sf3, sf4, so4

6. Escherichia coli [TaxId:83333] [330666] (3 PDB entries)

   1. Domains for 5jrd:

      1. Domain d5jrdl_: 5jrd L: [330667] Other proteins in same PDB: d5jrds_, d5jrdt_ automated match to d5a4il_ complexed with cl, f3s, fco, mg, ni, sf3, sf4, so4

      2. Domain d5jrdm_: 5jrd M: [330764] Other proteins in same PDB: d5jrds_, d5jrdt_ automated match to d5a4il_ complexed with cl, f3s, fco, mg, ni, sf3, sf4, so4

   2. Domains for 5lmm:

      1. Domain d5lmml_: 5lmm L: [337893] Other proteins in same PDB: d5lmms_, d5lmmt_ automated match to d5a4il_ complexed with cl, f3s, fco, li, lmt, mg, ni, sf3, sf4, so4, trs; mutant

      2. Domain d5lmmm_: 5lmm M: [337954] Other proteins in same PDB: d5lmms_, d5lmmt_ automated match to d5a4il_ complexed with cl, f3s, fco, li, lmt, mg, ni, sf3, sf4, so4, trs; mutant

   3. Domains for 5lry:

      1. Domain d5lryl_: 5lry L: [338904] Other proteins in same PDB: d5lrys_, d5lryt_ automated match to d5a4il_ complexed with cl, f3s, fco, li, lmt, mg, ni, sf3, sf4, so4; mutant

      2. Domain d5lrym_: 5lry M: [338903] Other proteins in same PDB: d5lrys_, d5lryt_ automated match to d5a4il_ complexed with cl, f3s, fco, li, lmt, mg, ni, sf3, sf4, so4; mutant

7. Hydrogenovibrio marinus [TaxId:28885] [196125] (4 PDB entries)

   1. Domains for 3ayx:

      1. Domain d3ayxa_: 3ayx A: [198975] Other proteins in same PDB: d3ayxb_, d3ayxd_ automated match to d3ayyc_ complexed with cmo, cyn, f3s, f4s, fe2, gol, mg, ni, o, sf4

      2. Domain d3ayxc_: 3ayx C: [198976] Other proteins in same PDB: d3ayxb_, d3ayxd_ automated match to d3ayyc_ complexed with cmo, cyn, f3s, f4s, fe2, gol, mg, ni, o, sf4

   2. Domains for 3ayy:

      1. Domain d3ayya_: 3ayy A: [196127] Other proteins in same PDB: d3ayyb_, d3ayyd_ automated match to d3myrd_ complexed with 3ni, cmo, cyn, f3s, fe2, gol, mg, o, sf3, sf4

      2. Domain d3ayyc_: 3ayy C: [196126] Other proteins in same PDB: d3ayyb_, d3ayyd_ automated match to d3myrd_ complexed with 3ni, cmo, cyn, f3s, fe2, gol, mg, o, sf3, sf4

   3. Domains for 3ayz:

      1. Domain d3ayza_: 3ayz A: [198977] Other proteins in same PDB: d3ayzb_, d3ayzd_ automated match to d3ayyc_ complexed with 3ni, cmo, cyn, f3s, f4s, fe2, gol, mg, o, sf3, sf4

      2. Domain d3ayzc_: 3ayz C: [198978] Other proteins in same PDB: d3ayzb_, d3ayzd_ automated match to d3ayyc_ complexed with 3ni, cmo, cyn, f3s, f4s, fe2, gol, mg, o, sf3, sf4

   4. Domains for 5y34:

      1. Domain d5y34a_: 5y34 A: [338100] Other proteins in same PDB: d5y34b_, d5y34d_ automated match to d3ayxa_ complexed with 3ni, f3s, fco, gol, mg, o, sf3, sf4

      2. Domain d5y34c_: 5y34 C: [338093] Other proteins in same PDB: d5y34b_, d5y34d_ automated match to d3ayxa_ complexed with 3ni, f3s, fco, gol, mg, o, sf3, sf4

8. Methanothermococcus thermolithotrophicus [TaxId:523845] [338595] (5 PDB entries)

   1. Domains for 5odc:

      1. Domain d5odcf_: 5odc F: [338596] automated match to d3ze7b_ complexed with 9s8, act, ca, fad, fes, gol, mg, na, nfu, pe3, sf4, trs

      2. Domain d5odcl_: 5odc L: [338609] automated match to d3ze7b_ complexed with 9s8, act, ca, fad, fes, gol, mg, na, nfu, pe3, sf4, trs

   2. Domains for 5odh:

      1. Domain d5odhf_: 5odh F: [338619] automated match to d3ze7b_ complexed with 9s8, act, com, fad, fe, fes, gol, nfu, pe3, sf4, tp7, trs

      2. Domain d5odhl_: 5odh L: [338660] automated match to d3ze7b_ complexed with 9s8, act, com, fad, fe, fes, gol, nfu, pe3, sf4, tp7, trs

   3. Domains for 5odi:

      1. Domain d5odif_: 5odi F: [338621] automated match to d3ze7b_ complexed with 9s8, act, com, fad, fe, fes, gol, nfu, pe3, sf4, trs

      2. Domain d5odil_: 5odi L: [338615] automated match to d3ze7b_ complexed with 9s8, act, com, fad, fe, fes, gol, nfu, pe3, sf4, trs

   4. Domains for 5odq:

      1. Domain d5odqf_: 5odq F: [338606] automated match to d3ze7b_ complexed with 9s8, 9sb, act, fad, fe, fes, gol, nfu, pe3, sf4, trs

      2. Domain d5odql_: 5odq L: [338608] automated match to d3ze7b_ complexed with 9s8, 9sb, act, fad, fe, fes, gol, nfu, pe3, sf4, trs

   5. Domains for 5odr:

      1. Domain d5odrf_: 5odr F: [338620] automated match to d3ze7b_ complexed with 9s8, act, com, fad, fe, fes, gol, nfu, pe3, sf4, so4, tp7

      2. Domain d5odrl_: 5odr L: [338627] automated match to d3ze7b_ complexed with 9s8, act, com, fad, fe, fes, gol, nfu, pe3, sf4, so4, tp7

9. Ralstonia eutropha [TaxId:381666] [196117] (5 PDB entries)

   1. Domain for 3rgw:

      • Domain d3rgwl_: 3rgw L: [196118] Other proteins in same PDB: d3rgws_ automated match to d3myrb_ complexed with f3s, f4s, mg, nfu, sf4

   2. Domain for 4iub:

      • Domain d4iubl_: 4iub L: [238142] Other proteins in same PDB: d4iubs_ automated match to d3rgwl_ complexed with cl, f3s, mg, nfv, po4, s3f, sf4

   3. Domain for 4iuc:

      • Domain d4iucl_: 4iuc L: [238143] Other proteins in same PDB: d4iucs_ automated match to d3rgwl_ complexed with cl, f3s, mg, nfv, s3f, sf4

   4. Domain for 4iud:

      • Domain d4iudl_: 4iud L: [238141] Other proteins in same PDB: d4iuds_ automated match to d3rgwl_ complexed with cl, f3s, mg, nfv, s3f, sf4

   5. Domain for 4ttt:

      • Domain d4tttl_: 4ttt L: [268871] Other proteins in same PDB: d4ttts_ automated match to d3uqyl_ complexed with cl, f3s, f4s, mg, na, nfv, po4, sf4

More info for Protein automated matches from e.18.1.0: automated matches

Timeline for Protein automated matches from e.18.1.0: automated matches:

• Protein automated matches from e.18.1.0: automated matches first appeared in SCOPe 2.01
  
• Protein automated matches from e.18.1.0: automated matches appears in SCOPe 2.05
  
• Protein automated matches from e.18.1.0: automated matches appears in SCOPe 2.07
  
• Protein automated matches from e.18.1.0: automated matches appears in the current release, SCOPe 2.08