Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)
  3. Fold e.18: HydB/Nqo4-like [56761] (1 superfamily)
    3 domains: (1) all-alpha; (2&3) alpha+beta
  4. Superfamily e.18.1: HydB/Nqo4-like [56762] (3 families) (S)
  5. Family e.18.1.0: automated matches [191637] (1 protein)
    not a true family
  6. Protein automated matches [191173] (15 species)
    not a true protein

Species:

  1. Allochromatium vinosum [TaxId:1049] [189416] (1 PDB entry)
  2. Citrobacter sp. [TaxId:1080067] [354043] (3 PDB entries)
    1. Domains for 5xvb:
      1. Domain d5xvbl_: 5xvb L: [354064]
        Other proteins in same PDB: d5xvbs_, d5xvbt_
        automated match to d3myrd_
        complexed with f3s, gol, mg, nfu, sf4
      2. Domain d5xvbm_: 5xvb M: [354045]
        Other proteins in same PDB: d5xvbs_, d5xvbt_
        automated match to d3myrd_
        complexed with f3s, gol, mg, nfu, sf4
    2. Domains for 5xvc:
      1. Domain d5xvcl_: 5xvc L: [354044]
        Other proteins in same PDB: d5xvcs_, d5xvct_
        automated match to d3myrd_
        complexed with 8ju, f3s, mg, nfv, peg, sf4
      2. Domain d5xvcm_: 5xvc M: [354069]
        Other proteins in same PDB: d5xvcs_, d5xvct_
        automated match to d3myrd_
        complexed with 8ju, f3s, mg, nfv, peg, sf4
    3. Domains for 5xvd:
      1. Domain d5xvdl_: 5xvd L: [354086]
        Other proteins in same PDB: d5xvds_, d5xvdt_
        automated match to d3myrd_
        complexed with 8ju, f3s, gol, mg, na, nfv, sf4
      2. Domain d5xvdm_: 5xvd M: [354085]
        Other proteins in same PDB: d5xvds_, d5xvdt_
        automated match to d3myrd_
        complexed with 8ju, f3s, gol, mg, na, nfv, sf4
  3. Cupriavidus necator [TaxId:106590] [313380] (1 PDB entry)
  4. Cupriavidus necator [TaxId:381666] [312466] (3 PDB entries)
    1. Domains for 5aa5:
      1. Domain d5aa5c_: 5aa5 C: [313042]
        automated match to d3myrd_
        complexed with mla, nfu, sf4
      2. Domain d5aa5e_: 5aa5 E: [312472]
        automated match to d3myrd_
        complexed with mla, nfu, sf4
      3. Domain d5aa5g_: 5aa5 G: [312477]
        automated match to d3myrd_
        complexed with mla, nfu, sf4
      4. Domain d5aa5i_: 5aa5 I: [312467]
        automated match to d3myrd_
        complexed with mla, nfu, sf4
      5. Domain d5aa5k_: 5aa5 K: [312469]
        automated match to d3myrd_
        complexed with mla, nfu, sf4
      6. Domain d5aa5l_: 5aa5 L: [312475]
        automated match to d3myrd_
        complexed with mla, nfu, sf4
    2. Domain for 7odg:
    3. Domain for 7odh:
  5. Escherichia coli [TaxId:1403831] [279526] (3 PDB entries)
    1. Domains for 5a4f:
      1. Domain d5a4fl_: 5a4f L: [279534]
        Other proteins in same PDB: d5a4fs_, d5a4ft_
        automated match to d3uqyl_
        complexed with cl, f3s, fco, mg, ni, sf3, sf4, so4
      2. Domain d5a4fm_: 5a4f M: [279539]
        Other proteins in same PDB: d5a4fs_, d5a4ft_
        automated match to d3uqyl_
        complexed with cl, f3s, fco, mg, ni, sf3, sf4, so4
    2. Domains for 5a4i:
      1. Domain d5a4il_: 5a4i L: [279536]
        Other proteins in same PDB: d5a4is_, d5a4it_
        automated match to d3uqyl_
        complexed with cl, f3s, fco, lmt, mg, ni, sf3, sf4, so4
      2. Domain d5a4im_: 5a4i M: [279540]
        Other proteins in same PDB: d5a4is_, d5a4it_
        automated match to d3uqyl_
        complexed with cl, f3s, fco, lmt, mg, ni, sf3, sf4, so4
    3. Domains for 5a4m:
      1. Domain d5a4ml_: 5a4m L: [279533]
        Other proteins in same PDB: d5a4ms_, d5a4mt_
        automated match to d3uqyl_
        complexed with cl, f3s, mg, nfv, sf3, sf4
      2. Domain d5a4mm_: 5a4m M: [279537]
        Other proteins in same PDB: d5a4ms_, d5a4mt_
        automated match to d3uqyl_
        complexed with cl, f3s, mg, nfv, sf3, sf4
  6. Escherichia coli [TaxId:562] [195685] (6 PDB entries)
    1. Domains for 3uqy:
      1. Domain d3uqyl_: 3uqy L: [217495]
        Other proteins in same PDB: d3uqys_, d3uqyt_
        automated match to d3uscl_
        complexed with cl, f3s, f4s, fco, gol, lmt, mg, ni, sf4, so4
      2. Domain d3uqym_: 3uqy M: [217496]
        Other proteins in same PDB: d3uqys_, d3uqyt_
        automated match to d3uscl_
        complexed with cl, f3s, f4s, fco, gol, lmt, mg, ni, sf4, so4
    2. Domains for 3usc:
      1. Domain d3uscl_: 3usc L: [195687]
        Other proteins in same PDB: d3uscs_, d3usct_
        automated match to d3myrd_
        complexed with 3ni, cl, f3s, fco, li, lmt, mg, sf3, sf4, so4
      2. Domain d3uscm_: 3usc M: [195686]
        Other proteins in same PDB: d3uscs_, d3usct_
        automated match to d3myrd_
        complexed with 3ni, cl, f3s, fco, li, lmt, mg, sf3, sf4, so4
    3. Domains for 3use:
      1. Domain d3usel_: 3use L: [201106]
        Other proteins in same PDB: d3uses_, d3uset_
        automated match to d3uscl_
        complexed with 3ni, cl, f3s, f4s, fco, gol, li, lmt, mg, sf3, sf4, so4
      2. Domain d3usem_: 3use M: [195688]
        Other proteins in same PDB: d3uses_, d3uset_
        automated match to d3myrd_
        complexed with 3ni, cl, f3s, f4s, fco, gol, li, lmt, mg, sf3, sf4, so4
    4. Domains for 4ue3:
      1. Domain d4ue3l_: 4ue3 L: [268935]
        Other proteins in same PDB: d4ue3s_, d4ue3t_
        automated match to d3uqyl_
        complexed with cl, f3s, mg, nfv, sf3, sf4, so4
      2. Domain d4ue3m_: 4ue3 M: [268936]
        Other proteins in same PDB: d4ue3s_, d4ue3t_
        automated match to d3uqyl_
        complexed with cl, f3s, mg, nfv, sf3, sf4, so4
    5. Domains for 5adu:
      1. Domain d5adul_: 5adu L: [279541]
        Other proteins in same PDB: d5adus_, d5adut_
        automated match to d3uqyl_
        complexed with cl, f3s, fco, lmt, mg, ni, sf3, sf4, so4
      2. Domain d5adum_: 5adu M: [279542]
        Other proteins in same PDB: d5adus_, d5adut_
        automated match to d3uqyl_
        complexed with cl, f3s, fco, lmt, mg, ni, sf3, sf4, so4
    6. Domains for 6en9:
      1. Domain d6en9l_: 6en9 L: [351226]
        Other proteins in same PDB: d6en9s_, d6en9t_
        automated match to d3myrd_
        complexed with f3s, fco, mg, ni, sf4, so4
      2. Domain d6en9m_: 6en9 M: [351156]
        Other proteins in same PDB: d6en9s_, d6en9t_
        automated match to d3myrd_
        complexed with f3s, fco, mg, ni, sf4, so4
  7. Escherichia coli [TaxId:83333] [330666] (14 PDB entries)
    1. Domains for 5jrd:
      1. Domain d5jrdl_: 5jrd L: [330667]
        Other proteins in same PDB: d5jrds_, d5jrdt_
        automated match to d5a4il_
        complexed with cl, f3s, fco, mg, ni, sf3, sf4, so4
      2. Domain d5jrdm_: 5jrd M: [330764]
        Other proteins in same PDB: d5jrds_, d5jrdt_
        automated match to d5a4il_
        complexed with cl, f3s, fco, mg, ni, sf3, sf4, so4
    2. Domains for 5lmm:
      1. Domain d5lmml_: 5lmm L: [337893]
        Other proteins in same PDB: d5lmms_, d5lmmt_
        automated match to d5a4il_
        complexed with cl, f3s, fco, li, lmt, mg, ni, sf3, sf4, so4, trs; mutant
      2. Domain d5lmmm_: 5lmm M: [337954]
        Other proteins in same PDB: d5lmms_, d5lmmt_
        automated match to d5a4il_
        complexed with cl, f3s, fco, li, lmt, mg, ni, sf3, sf4, so4, trs; mutant
    3. Domains for 5lry:
      1. Domain d5lryl_: 5lry L: [338904]
        Other proteins in same PDB: d5lrys_, d5lryt_
        automated match to d5a4il_
        complexed with cl, f3s, fco, li, lmt, mg, ni, sf3, sf4, so4; mutant
      2. Domain d5lrym_: 5lry M: [338903]
        Other proteins in same PDB: d5lrys_, d5lryt_
        automated match to d5a4il_
        complexed with cl, f3s, fco, li, lmt, mg, ni, sf3, sf4, so4; mutant
    4. Domains for 6ehq:
      1. Domain d6ehql_: 6ehq L: [351154]
        Other proteins in same PDB: d6ehqs_, d6ehqt_
        automated match to d3myrd_
        complexed with f3s, fco, mg, ni, sf4
      2. Domain d6ehqm_: 6ehq M: [351221]
        Other proteins in same PDB: d6ehqs_, d6ehqt_
        automated match to d3myrd_
        complexed with f3s, fco, mg, ni, sf4
    5. Domains for 6fpi:
      1. Domain d6fpil_: 6fpi L: [361472]
        Other proteins in same PDB: d6fpis_, d6fpit_
        automated match to d5lmml_
        complexed with cl, ej2, f3s, lmt, mg, sf3, sf4, so4
      2. Domain d6fpim_: 6fpi M: [361395]
        Other proteins in same PDB: d6fpis_, d6fpit_
        automated match to d5lmml_
        complexed with cl, ej2, f3s, lmt, mg, sf3, sf4, so4
    6. Domains for 6fpo:
      1. Domain d6fpol_: 6fpo L: [365317]
        Other proteins in same PDB: d6fpos_, d6fpot_
        automated match to d5lmml_
        complexed with cl, f3s, fco, li, lmt, mg, ni, sf3, sf4, so4
      2. Domain d6fpom_: 6fpo M: [365275]
        Other proteins in same PDB: d6fpos_, d6fpot_
        automated match to d5lmml_
        complexed with cl, f3s, fco, li, lmt, mg, ni, sf3, sf4, so4
    7. Domains for 6fpw:
      1. Domain d6fpwl_: 6fpw L: [365286]
        Other proteins in same PDB: d6fpws_, d6fpwt_
        automated match to d5lmml_
        complexed with cl, ej2, f3s, lmt, mg, sf3, sf4, so4
      2. Domain d6fpwm_: 6fpw M: [365310]
        Other proteins in same PDB: d6fpws_, d6fpwt_
        automated match to d5lmml_
        complexed with cl, ej2, f3s, lmt, mg, sf3, sf4, so4
    8. Domains for 6g7m:
      1. Domain d6g7ml_: 6g7m L: [367059]
        Other proteins in same PDB: d6g7ms_, d6g7mt_
        automated match to d3myrd_
        complexed with f3s, fco, mg, ni, sf4
      2. Domain d6g7mm_: 6g7m M: [367062]
        Other proteins in same PDB: d6g7ms_, d6g7mt_
        automated match to d3myrd_
        complexed with f3s, fco, mg, ni, sf4
    9. Domains for 6g7r:
      1. Domain d6g7rl_: 6g7r L: [365388]
        Other proteins in same PDB: d6g7rs_, d6g7rt_
        automated match to d5lmml_
        complexed with cl, ej2, f3s, lmt, mg, sf3, sf4, so4
      2. Domain d6g7rm_: 6g7r M: [365272]
        Other proteins in same PDB: d6g7rs_, d6g7rt_
        automated match to d5lmml_
        complexed with cl, ej2, f3s, lmt, mg, sf3, sf4, so4
    10. Domains for 6g94:
      1. Domain d6g94j_: 6g94 J: [353460]
        automated match to d5lmml_
        complexed with cl, er2, f3s, fco, hem, mg, ni, sf4
      2. Domain d6g94k_: 6g94 K: [353459]
        automated match to d5lmml_
        complexed with cl, er2, f3s, fco, hem, mg, ni, sf4
      3. Domain d6g94l_: 6g94 L: [353508]
        automated match to d5lmml_
        complexed with cl, er2, f3s, fco, hem, mg, ni, sf4
      4. Domain d6g94m_: 6g94 M: [353617]
        automated match to d5lmml_
        complexed with cl, er2, f3s, fco, hem, mg, ni, sf4
    11. Domains for 6gal:
      1. Domain d6gall_: 6gal L: [365334]
        Other proteins in same PDB: d6gals_, d6galt_
        automated match to d5lmml_
        complexed with cl, cxs, ej2, f3s, li, mg, sf3, sf4, so4
      2. Domain d6galm_: 6gal M: [365266]
        Other proteins in same PDB: d6gals_, d6galt_
        automated match to d5lmml_
        complexed with cl, cxs, ej2, f3s, li, mg, sf3, sf4, so4
    12. Domains for 6gam:
      1. Domain d6gaml_: 6gam L: [365050]
        Other proteins in same PDB: d6gams_, d6gamt_
        automated match to d3myrd_
        complexed with f3s, fco, mg, ni, sf4
      2. Domain d6gamm_: 6gam M: [365073]
        Other proteins in same PDB: d6gams_, d6gamt_
        automated match to d3myrd_
        complexed with f3s, fco, mg, ni, sf4
    13. Domains for 6gan:
      1. Domain d6ganl_: 6gan L: [365049]
        Other proteins in same PDB: d6gans_, d6gant_
        automated match to d3myrd_
        complexed with f3s, fco, mg, ni, sf4
      2. Domain d6ganm_: 6gan M: [365045]
        Other proteins in same PDB: d6gans_, d6gant_
        automated match to d3myrd_
        complexed with f3s, fco, mg, ni, sf4
    14. Domains for 6rp2:
      1. Domain d6rp2l_: 6rp2 L: [382753]
        Other proteins in same PDB: d6rp2s_, d6rp2t_
        automated match to d5lmml_
        complexed with cl, f3s, fco, li, lmt, mg, ni, sf3, sf4, so4
      2. Domain d6rp2m_: 6rp2 M: [382748]
        Other proteins in same PDB: d6rp2s_, d6rp2t_
        automated match to d5lmml_
        complexed with cl, f3s, fco, li, lmt, mg, ni, sf3, sf4, so4
  8. Escherichia coli [TaxId:83334] [351162] (1 PDB entry)
  9. Hydrogenophilus thermoluteolus [TaxId:297] [346413] (2 PDB entries)
    1. Domains for 5xf9:
      1. Domain d5xf9d_: 5xf9 D: [345879]
        automated match to d5odqf_
        complexed with 3ni, fco, fes, fmn, mg, sf4
      2. Domain d5xf9h_: 5xf9 H: [345880]
        automated match to d5odqf_
        complexed with 3ni, fco, fes, fmn, mg, sf4
    2. Domains for 5xfa:
      1. Domain d5xfad_: 5xfa D: [345881]
        automated match to d5odqf_
        complexed with fco, fes, mg, ni, sf4
      2. Domain d5xfah_: 5xfa H: [345882]
        automated match to d5odqf_
        complexed with fco, fes, mg, ni, sf4
  10. Hydrogenovibrio marinus [TaxId:28885] [196125] (3 PDB entries)
    1. Domains for 3ayx:
      1. Domain d3ayxa_: 3ayx A: [198975]
        Other proteins in same PDB: d3ayxb_, d3ayxd_
        automated match to d3ayyc_
        complexed with cmo, cyn, f3s, f4s, fe2, gol, mg, ni, o, sf4
      2. Domain d3ayxc_: 3ayx C: [198976]
        Other proteins in same PDB: d3ayxb_, d3ayxd_
        automated match to d3ayyc_
        complexed with cmo, cyn, f3s, f4s, fe2, gol, mg, ni, o, sf4
    2. Domains for 3ayz:
      1. Domain d3ayza_: 3ayz A: [198977]
        Other proteins in same PDB: d3ayzb_, d3ayzd_
        automated match to d3ayyc_
        complexed with 3ni, cmo, cyn, f3s, f4s, fe2, gol, mg, o, sf3, sf4
      2. Domain d3ayzc_: 3ayz C: [198978]
        Other proteins in same PDB: d3ayzb_, d3ayzd_
        automated match to d3ayyc_
        complexed with 3ni, cmo, cyn, f3s, f4s, fe2, gol, mg, o, sf3, sf4
    3. Domains for 5y34:
      1. Domain d5y34a_: 5y34 A: [338100]
        Other proteins in same PDB: d5y34b_, d5y34d_
        automated match to d3ayxa_
        complexed with 3ni, f3s, fco, gol, mg, o, sf3, sf4
      2. Domain d5y34c_: 5y34 C: [338093]
        Other proteins in same PDB: d5y34b_, d5y34d_
        automated match to d3ayxa_
        complexed with 3ni, f3s, fco, gol, mg, o, sf3, sf4
  11. Methanosarcina barkeri [TaxId:1434108] [376116] (3 PDB entries)
    1. Domain for 6qgr:
      • Domain d6qgra_: 6qgr A: [376117]
        automated match to d5xf9h_
        complexed with 144, bu3, fad, fe, fes, mg, mpd, nfu, sf4
    2. Domain for 6qgt:
      • Domain d6qgta_: 6qgt A: [376119]
        automated match to d5xf9h_
        complexed with 144, bu3, fad, fe, fes, j52, mg, mpd, sf4
    3. Domain for 6qii:
      • Domain d6qiia_: 6qii A: [376141]
        automated match to d5xf9h_
        complexed with 144, bu3, fad, fe, fes, mg, nfu, sf4, xe
  12. Methanothermococcus thermolithotrophicus [TaxId:523845] [338595] (5 PDB entries)
    1. Domains for 5odc:
      1. Domain d5odcf_: 5odc F: [338596]
        automated match to d3ze7b_
        complexed with 9s8, act, ca, fad, fes, gol, mg, na, nfu, pe3, sf4, trs
      2. Domain d5odcl_: 5odc L: [338609]
        automated match to d3ze7b_
        complexed with 9s8, act, ca, fad, fes, gol, mg, na, nfu, pe3, sf4, trs
    2. Domains for 5odh:
      1. Domain d5odhf_: 5odh F: [338619]
        automated match to d3ze7b_
        complexed with 9s8, act, com, fad, fe, fes, gol, nfu, pe3, sf4, tp7, trs
      2. Domain d5odhl_: 5odh L: [338660]
        automated match to d3ze7b_
        complexed with 9s8, act, com, fad, fe, fes, gol, nfu, pe3, sf4, tp7, trs
    3. Domains for 5odi:
      1. Domain d5odif_: 5odi F: [338621]
        automated match to d3ze7b_
        complexed with 9s8, act, com, fad, fe, fes, gol, nfu, pe3, sf4, trs
      2. Domain d5odil_: 5odi L: [338615]
        automated match to d3ze7b_
        complexed with 9s8, act, com, fad, fe, fes, gol, nfu, pe3, sf4, trs
    4. Domains for 5odq:
      1. Domain d5odqf_: 5odq F: [338606]
        automated match to d3ze7b_
        complexed with 9s8, 9sb, act, fad, fe, fes, gol, nfu, pe3, sf4, trs
      2. Domain d5odql_: 5odq L: [338608]
        automated match to d3ze7b_
        complexed with 9s8, 9sb, act, fad, fe, fes, gol, nfu, pe3, sf4, trs
    5. Domains for 5odr:
      1. Domain d5odrf_: 5odr F: [338620]
        automated match to d3ze7b_
        complexed with 9s8, act, com, fad, fe, fes, gol, nfu, pe3, sf4, so4, tp7
      2. Domain d5odrl_: 5odr L: [338627]
        automated match to d3ze7b_
        complexed with 9s8, act, com, fad, fe, fes, gol, nfu, pe3, sf4, so4, tp7
  13. Sheep (Ovis aries) [TaxId:9940] [393997] (2 PDB entries)
    1. Domain for 6zk9:
    2. Domain for 6zkv:
  14. Ralstonia eutropha [TaxId:381666] [196117] (8 PDB entries)
    1. Domain for 3rgw:
    2. Domain for 4iub:
    3. Domain for 4iuc:
    4. Domain for 4iud:
    5. Domain for 4ttt:
    6. Domain for 5mdj:
    7. Domain for 5mdk:
    8. Domain for 5mdl:
      • Domain d5mdll_: 5mdl L: [346734]
        Other proteins in same PDB: d5mdls_
        automated match to d5lmml_
        complexed with cl, f3s, f4s, mg, nfv, o, oxy, peg, sf4
  15. Thermosynechococcus elongatus [TaxId:197221] [365420] (4 PDB entries)
    1. Domain for 6khi:
    2. Domain for 6khj:
      • Domain d6khjh_: 6khj H: [380363]
        Other proteins in same PDB: d6khjd_
        automated match to d3iam4_
        complexed with bcr, dgd, lhg, lmg, lmt, pl9, sf4, sqd
    3. Domain for 6nbq:
    4. Domain for 6nby:

More info for Protein automated matches from e.18.1.0: automated matches

Timeline for Protein automated matches from e.18.1.0: automated matches: