Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2413227Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2424564Superfamily c.1.15: Xylose isomerase-like [51658] (8 families) (S)
    different families share similar but non-identical metal-binding sites
  5. 2424876Family c.1.15.0: automated matches [191634] (1 protein)
    not a true family
  6. 2424877Protein automated matches [191168] (5 species)
    not a true protein

Species:

  1. 2424878Bacteroides thetaiotaomicron [TaxId:226186] [311472] (1 PDB entry)
  2. 2424887Brucella melitensis [TaxId:359391] [189392] (1 PDB entry)
  3. 2424890Piromyces sp. [TaxId:73868] [340898] (13 PDB entries)
    1. Domains for 5nh4:
      1. 2424911Domain d5nh4a_: 5nh4 A: [340927]
        automated match to d4xkmf_
        complexed with gol, mg, so4
      2. 2424912Domain d5nh4b_: 5nh4 B: [340930]
        automated match to d4xkmf_
        complexed with gol, mg, so4
      3. 2424913Domain d5nh4c_: 5nh4 C: [340928]
        automated match to d4xkmf_
        complexed with gol, mg, so4
      4. 2424914Domain d5nh4d_: 5nh4 D: [340969]
        automated match to d4xkmf_
        complexed with gol, mg, so4
    2. Domains for 5nh5:
      1. 2424899Domain d5nh5a_: 5nh5 A: [340929]
        automated match to d4xkmf_
        complexed with ca, fe2, gol, mg, so4
      2. 2424900Domain d5nh5b_: 5nh5 B: [340931]
        automated match to d4xkmf_
        complexed with ca, fe2, gol, mg, so4
      3. 2424901Domain d5nh5c_: 5nh5 C: [340932]
        automated match to d4xkmf_
        complexed with ca, fe2, gol, mg, so4
      4. 2424902Domain d5nh5d_: 5nh5 D: [340946]
        automated match to d4xkmf_
        complexed with ca, fe2, gol, mg, so4
    3. Domains for 5nh6:
      1. 2424895Domain d5nh6a_: 5nh6 A: [340950]
        automated match to d4xkmf_
        complexed with mg, so4, xyl
      2. 2424896Domain d5nh6b_: 5nh6 B: [340916]
        automated match to d4xkmf_
        complexed with mg, so4, xyl
      3. 2424897Domain d5nh6c_: 5nh6 C: [340956]
        automated match to d4xkmf_
        complexed with mg, so4, xyl
      4. 2424898Domain d5nh6d_: 5nh6 D: [340914]
        automated match to d4xkmf_
        complexed with mg, so4, xyl
    4. Domains for 5nh7:
      1. 2424923Domain d5nh7a_: 5nh7 A: [341039]
        automated match to d4xkmf_
        complexed with mg, so4, xls, xyp, xys
      2. 2424924Domain d5nh7b_: 5nh7 B: [340965]
        automated match to d4xkmf_
        complexed with mg, so4, xls, xyp, xys
      3. 2424925Domain d5nh7c_: 5nh7 C: [341057]
        automated match to d4xkmf_
        complexed with mg, so4, xls, xyp, xys
      4. 2424926Domain d5nh7d_: 5nh7 D: [340933]
        automated match to d4xkmf_
        complexed with mg, so4, xls, xyp, xys
    5. Domains for 5nh8:
      1. 2424919Domain d5nh8a_: 5nh8 A: [340952]
        automated match to d4xkmf_
        complexed with ca, so4, xls, xyp
      2. 2424920Domain d5nh8b_: 5nh8 B: [340926]
        automated match to d4xkmf_
        complexed with ca, so4, xls, xyp
      3. 2424921Domain d5nh8c_: 5nh8 C: [340959]
        automated match to d4xkmf_
        complexed with ca, so4, xls, xyp
      4. 2424922Domain d5nh8d_: 5nh8 D: [340913]
        automated match to d4xkmf_
        complexed with ca, so4, xls, xyp
    6. Domains for 5nh9:
      1. 2424931Domain d5nh9a_: 5nh9 A: [340937]
        automated match to d4xkmf_
        complexed with mn, so4, xls, xyp
      2. 2424932Domain d5nh9b_: 5nh9 B: [340917]
        automated match to d4xkmf_
        complexed with mn, so4, xls, xyp
      3. 2424933Domain d5nh9c_: 5nh9 C: [340943]
        automated match to d4xkmf_
        complexed with mn, so4, xls, xyp
      4. 2424934Domain d5nh9d_: 5nh9 D: [340942]
        automated match to d4xkmf_
        complexed with mn, so4, xls, xyp
    7. Domains for 5nha:
      1. 2424903Domain d5nhaa_: 5nha A: [340902]
        automated match to d4xkmf_
        complexed with mn, so4, sor
      2. 2424904Domain d5nhab_: 5nha B: [340947]
        automated match to d4xkmf_
        complexed with mn, so4, sor
      3. 2424905Domain d5nhac_: 5nha C: [340909]
        automated match to d4xkmf_
        complexed with mn, so4, sor
      4. 2424906Domain d5nhad_: 5nha D: [340919]
        automated match to d4xkmf_
        complexed with mn, so4, sor
    8. Domains for 5nhb:
      1. 2424935Domain d5nhba_: 5nhb A: [340899]
        automated match to d4xkmf_
        complexed with fe2, so4
      2. 2424936Domain d5nhbb_: 5nhb B: [340903]
        automated match to d4xkmf_
        complexed with fe2, so4
      3. 2424937Domain d5nhbc_: 5nhb C: [340921]
        automated match to d4xkmf_
        complexed with fe2, so4
      4. 2424938Domain d5nhbd_: 5nhb D: [340918]
        automated match to d4xkmf_
        complexed with fe2, so4
    9. Domains for 5nhc:
      1. 2424927Domain d5nhca_: 5nhc A: [340958]
        automated match to d4xkmf_
        complexed with co, hyp, xul
      2. 2424928Domain d5nhcb_: 5nhc B: [340963]
        automated match to d4xkmf_
        complexed with co, hyp, xul
      3. 2424929Domain d5nhcc_: 5nhc C: [341103]
        automated match to d4xkmf_
        complexed with co, hyp, xul
      4. 2424930Domain d5nhcd_: 5nhc D: [340941]
        automated match to d4xkmf_
        complexed with co, hyp, xul
    10. Domains for 5nhd:
      1. 2424907Domain d5nhda_: 5nhd A: [340907]
        automated match to d4xkmf_
        complexed with ni, so4, xls, xyp, xys
      2. 2424908Domain d5nhdb_: 5nhd B: [340904]
        automated match to d4xkmf_
        complexed with ni, so4, xls, xyp, xys
      3. 2424909Domain d5nhdc_: 5nhd C: [340999]
        automated match to d4xkmf_
        complexed with ni, so4, xls, xyp, xys
      4. 2424910Domain d5nhdd_: 5nhd D: [340974]
        automated match to d4xkmf_
        complexed with ni, so4, xls, xyp, xys
    11. Domains for 5nhe:
      1. 2424915Domain d5nhea_: 5nhe A: [340966]
        automated match to d4xkmf_
        complexed with cd, so4, xls, xyp, xys
      2. 2424916Domain d5nheb_: 5nhe B: [340915]
        automated match to d4xkmf_
        complexed with cd, so4, xls, xyp, xys
      3. 2424917Domain d5nhec_: 5nhe C: [340951]
        automated match to d4xkmf_
        complexed with cd, so4, xls, xyp, xys
      4. 2424918Domain d5nhed_: 5nhe D: [341003]
        automated match to d4xkmf_
        complexed with cd, so4, xls, xyp, xys
    12. Domains for 5nhm:
      1. 2424891Domain d5nhma_: 5nhm A: [340968]
        automated match to d4xkmf_
        complexed with acy, gol, so4
      2. 2424892Domain d5nhmb_: 5nhm B: [340940]
        automated match to d4xkmf_
        complexed with acy, gol, so4
      3. 2424893Domain d5nhmc_: 5nhm C: [341014]
        automated match to d4xkmf_
        complexed with acy, gol, so4
      4. 2424894Domain d5nhmd_: 5nhm D: [341037]
        automated match to d4xkmf_
        complexed with acy, gol, so4
    13. Domains for 5yn3:
      1. 3051909Domain d5yn3c_: 5yn3 C: [351971]
        automated match to d5nhma_
        complexed with gol, mn
      2. 3051911Domain d5yn3b_: 5yn3 B: [351973]
        automated match to d5nhma_
        complexed with gol, mn
      3. 3051943Domain d5yn3a_: 5yn3 A: [352005]
        automated match to d5nhma_
        complexed with gol, mn
      4. 3051951Domain d5yn3d_: 5yn3 D: [352013]
        automated match to d5nhma_
        complexed with gol, mn
  4. 2424939Thermotoga maritima [TaxId:243274] [255680] (3 PDB entries)
    1. Domain for 2x7v:
    2. Domain for 2x7w:
    3. Domain for 4hno:
  5. 2424943Thermus thermophilus HB8 [TaxId:300852] [226025] (1 PDB entry)

More info for Protein automated matches from c.1.15.0: automated matches

Timeline for Protein automated matches from c.1.15.0: automated matches: