Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1631855Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
  3. 1637451Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 1638761Superfamily d.15.4: 2Fe-2S ferredoxin-like [54292] (3 families) (S)
  5. 1639120Family d.15.4.0: automated matches [191632] (1 protein)
    not a true family
  6. 1639121Protein automated matches [191164] (13 species)
    not a true protein

Species:

  1. 1639122Eubacterium barkeri [TaxId:1528] [225695] (1 PDB entry)
  2. 1639125Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [189445] (1 PDB entry)
  3. 1639128Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [236409] (2 PDB entries)
    1. Domain for 2mh7:
    2. Domain for 4itk:
  4. 1639131Human (Homo sapiens) [TaxId:9606] [189894] (1 PDB entry)
  5. 1639134Novosphingobium aromaticivorans [TaxId:279238] [189373] (1 PDB entry)
  6. 1639140Pig (Sus scrofa) [TaxId:9823] [255742] (3 PDB entries)
    1. Domain for 3ae1:
    2. Domain for 3ae2:
    3. Domain for 3aeb:
  7. 1639144Pig roundworm (Ascaris suum) [TaxId:6253] [256141] (3 PDB entries)
    1. Domains for 3vr8:
      1. 1639147Domain d3vr8b1: 3vr8 B:33-138 [250651]
        Other proteins in same PDB: d3vr8b2, d3vr8f2
        automated match to d1zoyb1
        complexed with eph, f3s, fad, fes, hem, mli, rqx, sf4
      2. 1639148Domain d3vr8f1: 3vr8 F:33-138 [250653]
        Other proteins in same PDB: d3vr8b2, d3vr8f2
        automated match to d1zoyb1
        complexed with eph, f3s, fad, fes, hem, mli, rqx, sf4
    2. Domains for 3vr9:
      1. 1639149Domain d3vr9b1: 3vr9 B:33-138 [250655]
        Other proteins in same PDB: d3vr9b2, d3vr9f2
        automated match to d1zoyb1
        complexed with eph, f3s, fad, fes, ftn, hem, mli, sf4
      2. 1639150Domain d3vr9f1: 3vr9 F:33-138 [250657]
        Other proteins in same PDB: d3vr9b2, d3vr9f2
        automated match to d1zoyb1
        complexed with eph, f3s, fad, fes, ftn, hem, mli, sf4
    3. Domains for 3vrb:
      1. 1639145Domain d3vrbb1: 3vrb B:33-138 [250659]
        Other proteins in same PDB: d3vrbb2, d3vrbf2
        automated match to d1zoyb1
        complexed with eph, f3s, fad, fes, ftn, fum, hem, sf4
      2. 1639146Domain d3vrbf1: 3vrb F:33-138 [250661]
        Other proteins in same PDB: d3vrbb2, d3vrbf2
        automated match to d1zoyb1
        complexed with eph, f3s, fad, fes, ftn, fum, hem, sf4
  8. 1639151Pseudomonas putida [TaxId:303] [189910] (1 PDB entry)
  9. 1639153Rhodobacter capsulatus [TaxId:1061] [255635] (2 PDB entries)
    1. Domains for 2w3r:
      1. 1639158Domain d2w3ra1: 2w3r A:1-84 [238896]
        Other proteins in same PDB: d2w3ra2, d2w3ra3, d2w3ra4, d2w3rb1, d2w3rb2, d2w3rc2, d2w3rc3, d2w3rc4, d2w3rd1, d2w3rd2, d2w3re2, d2w3re3, d2w3re4, d2w3rf1, d2w3rf2, d2w3rg2, d2w3rg3, d2w3rg4, d2w3rh1, d2w3rh2
        automated match to d1jroa2
        complexed with ca, fad, fes, hpa, mom, mpn
      2. 1639159Domain d2w3rc1: 2w3r C:1-84 [238900]
        Other proteins in same PDB: d2w3ra2, d2w3ra3, d2w3ra4, d2w3rb1, d2w3rb2, d2w3rc2, d2w3rc3, d2w3rc4, d2w3rd1, d2w3rd2, d2w3re2, d2w3re3, d2w3re4, d2w3rf1, d2w3rf2, d2w3rg2, d2w3rg3, d2w3rg4, d2w3rh1, d2w3rh2
        automated match to d1jroa2
        complexed with ca, fad, fes, hpa, mom, mpn
      3. 1639160Domain d2w3re1: 2w3r E:1-84 [238904]
        Other proteins in same PDB: d2w3ra2, d2w3ra3, d2w3ra4, d2w3rb1, d2w3rb2, d2w3rc2, d2w3rc3, d2w3rc4, d2w3rd1, d2w3rd2, d2w3re2, d2w3re3, d2w3re4, d2w3rf1, d2w3rf2, d2w3rg2, d2w3rg3, d2w3rg4, d2w3rh1, d2w3rh2
        automated match to d1jroa2
        complexed with ca, fad, fes, hpa, mom, mpn
      4. 1639161Domain d2w3rg1: 2w3r G:1-84 [238908]
        Other proteins in same PDB: d2w3ra2, d2w3ra3, d2w3ra4, d2w3rb1, d2w3rb2, d2w3rc2, d2w3rc3, d2w3rc4, d2w3rd1, d2w3rd2, d2w3re2, d2w3re3, d2w3re4, d2w3rf1, d2w3rf2, d2w3rg2, d2w3rg3, d2w3rg4, d2w3rh1, d2w3rh2
        automated match to d1jroa2
        complexed with ca, fad, fes, hpa, mom, mpn
    2. Domains for 2w3s:
      1. 1639154Domain d2w3sa1: 2w3s A:1-84 [238912]
        Other proteins in same PDB: d2w3sa2, d2w3sa3, d2w3sa4, d2w3sb1, d2w3sb2, d2w3sc2, d2w3sc3, d2w3sc4, d2w3sd1, d2w3sd2, d2w3se2, d2w3se3, d2w3se4, d2w3sf1, d2w3sf2, d2w3sg2, d2w3sg3, d2w3sg4, d2w3sh1, d2w3sh2
        automated match to d1jroa2
        complexed with ca, fad, fes, mom, mpn, xan
      2. 1639155Domain d2w3sc1: 2w3s C:1-84 [238916]
        Other proteins in same PDB: d2w3sa2, d2w3sa3, d2w3sa4, d2w3sb1, d2w3sb2, d2w3sc2, d2w3sc3, d2w3sc4, d2w3sd1, d2w3sd2, d2w3se2, d2w3se3, d2w3se4, d2w3sf1, d2w3sf2, d2w3sg2, d2w3sg3, d2w3sg4, d2w3sh1, d2w3sh2
        automated match to d1jroa2
        complexed with ca, fad, fes, mom, mpn, xan
      3. 1639156Domain d2w3se1: 2w3s E:1-84 [238920]
        Other proteins in same PDB: d2w3sa2, d2w3sa3, d2w3sa4, d2w3sb1, d2w3sb2, d2w3sc2, d2w3sc3, d2w3sc4, d2w3sd1, d2w3sd2, d2w3se2, d2w3se3, d2w3se4, d2w3sf1, d2w3sf2, d2w3sg2, d2w3sg3, d2w3sg4, d2w3sh1, d2w3sh2
        automated match to d1jroa2
        complexed with ca, fad, fes, mom, mpn, xan
      4. 1639157Domain d2w3sg1: 2w3s G:1-84 [238924]
        Other proteins in same PDB: d2w3sa2, d2w3sa3, d2w3sa4, d2w3sb1, d2w3sb2, d2w3sc2, d2w3sc3, d2w3sc4, d2w3sd1, d2w3sd2, d2w3se2, d2w3se3, d2w3se4, d2w3sf1, d2w3sf2, d2w3sg2, d2w3sg3, d2w3sg4, d2w3sh1, d2w3sh2
        automated match to d1jroa2
        complexed with ca, fad, fes, mom, mpn, xan
  10. 1639162Rhodopseudomonas palustris [TaxId:1076] [225824] (1 PDB entry)
  11. 1639164Rhodopseudomonas palustris [TaxId:316058] [260314] (1 PDB entry)
  12. 1639166Saccharomyces cerevisiae [TaxId:559292] [261090] (1 PDB entry)
  13. 1639168Thermus thermophilus HB8 [TaxId:300852] [255888] (3 PDB entries)
    1. Domains for 3i9v:
      1. 1639171Domain d3i9v31: 3i9v 3:1-95 [246755]
        Other proteins in same PDB: d3i9v11, d3i9v12, d3i9v13, d3i9v2_, d3i9v32, d3i9v33, d3i9v34, d3i9v4_, d3i9v5_, d3i9v6_, d3i9v7_, d3i9v9_, d3i9va1, d3i9va2, d3i9va3, d3i9vb_, d3i9vc2, d3i9vc3, d3i9vc4, d3i9vd_, d3i9ve_, d3i9vf_, d3i9vg_, d3i9vh_
        automated match to d2fug33
        complexed with ca, fes, fmn, mn, sf4
      2. 1639172Domain d3i9vc1: 3i9v C:1-95 [246768]
        Other proteins in same PDB: d3i9v11, d3i9v12, d3i9v13, d3i9v2_, d3i9v32, d3i9v33, d3i9v34, d3i9v4_, d3i9v5_, d3i9v6_, d3i9v7_, d3i9v9_, d3i9va1, d3i9va2, d3i9va3, d3i9vb_, d3i9vc2, d3i9vc3, d3i9vc4, d3i9vd_, d3i9ve_, d3i9vf_, d3i9vg_, d3i9vh_
        automated match to d2fug33
        complexed with ca, fes, fmn, mn, sf4
    2. Domains for 3iam:
      1. 1639169Domain d3iam31: 3iam 3:1-95 [246781]
        Other proteins in same PDB: d3iam11, d3iam12, d3iam13, d3iam2_, d3iam32, d3iam33, d3iam34, d3iam4_, d3iam5_, d3iam6_, d3iam7_, d3iam9_, d3iama1, d3iama2, d3iama3, d3iamb_, d3iamc2, d3iamc3, d3iamc4, d3iamd_, d3iame_, d3iamf_, d3iamg_, d3iamh_
        automated match to d2fug33
        complexed with ca, fes, fmn, mg, nai, sf4
      2. 1639170Domain d3iamc1: 3iam C:1-95 [246794]
        Other proteins in same PDB: d3iam11, d3iam12, d3iam13, d3iam2_, d3iam32, d3iam33, d3iam34, d3iam4_, d3iam5_, d3iam6_, d3iam7_, d3iam9_, d3iama1, d3iama2, d3iama3, d3iamb_, d3iamc2, d3iamc3, d3iamc4, d3iamd_, d3iame_, d3iamf_, d3iamg_, d3iamh_
        automated match to d2fug33
        complexed with ca, fes, fmn, mg, nai, sf4
    3. Domains for 3ias:
      1. 1639173Domain d3ias31: 3ias 3:1-95 [246847]
        Other proteins in same PDB: d3ias11, d3ias12, d3ias13, d3ias2_, d3ias32, d3ias33, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa2, d3iasa3, d3iasb_, d3iasc2, d3iasc3, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj2, d3iasj3, d3iask_, d3iasl2, d3iasl3, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass2, d3iass3, d3iast_, d3iasu2, d3iasu3, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
        automated match to d2fug33
        complexed with ca, fes, fmn, sf4
      2. 1639174Domain d3iasc1: 3ias C:1-95 [246860]
        Other proteins in same PDB: d3ias11, d3ias12, d3ias13, d3ias2_, d3ias32, d3ias33, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa2, d3iasa3, d3iasb_, d3iasc2, d3iasc3, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj2, d3iasj3, d3iask_, d3iasl2, d3iasl3, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass2, d3iass3, d3iast_, d3iasu2, d3iasu3, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
        automated match to d2fug33
        complexed with ca, fes, fmn, sf4
      3. 1639175Domain d3iasl1: 3ias L:1-95 [246873]
        Other proteins in same PDB: d3ias11, d3ias12, d3ias13, d3ias2_, d3ias32, d3ias33, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa2, d3iasa3, d3iasb_, d3iasc2, d3iasc3, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj2, d3iasj3, d3iask_, d3iasl2, d3iasl3, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass2, d3iass3, d3iast_, d3iasu2, d3iasu3, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
        automated match to d2fug33
        complexed with ca, fes, fmn, sf4
      4. 1639176Domain d3iasu1: 3ias U:1-95 [246886]
        Other proteins in same PDB: d3ias11, d3ias12, d3ias13, d3ias2_, d3ias32, d3ias33, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa2, d3iasa3, d3iasb_, d3iasc2, d3iasc3, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj2, d3iasj3, d3iask_, d3iasl2, d3iasl3, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass2, d3iass3, d3iast_, d3iasu2, d3iasu3, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
        automated match to d2fug33
        complexed with ca, fes, fmn, sf4

More info for Protein automated matches from d.15.4.0: automated matches

Timeline for Protein automated matches from d.15.4.0: automated matches: