Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2158219Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 2159798Superfamily d.15.4: 2Fe-2S ferredoxin-like [54292] (3 families) (S)
  5. 2160171Family d.15.4.0: automated matches [191632] (1 protein)
    not a true family
  6. 2160172Protein automated matches [191164] (21 species)
    not a true protein

Species:

  1. 2160173Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [261090] (2 PDB entries)
    1. Domain for 2mjd:
    2. Domain for 2mje:
  2. 2160176Clostridium pasteurianum [TaxId:1501] [279203] (7 PDB entries)
    1. Domains for 4xdc:
      1. 2160179Domain d4xdca1: 4xdc A:1-126 [279363]
        Other proteins in same PDB: d4xdca2, d4xdca3, d4xdca4, d4xdcb2, d4xdcb3, d4xdcb4
        automated match to d3c8ya2
        complexed with 402, fes, mg, sf4
      2. 2160180Domain d4xdcb1: 4xdc B:2-126 [279366]
        Other proteins in same PDB: d4xdca2, d4xdca3, d4xdca4, d4xdcb2, d4xdcb3, d4xdcb4
        automated match to d3c8ya2
        complexed with 402, fes, mg, sf4
    2. Domains for 4xdd:
      1. 2160177Domain d4xdda1: 4xdd A:1-126 [279360]
        Other proteins in same PDB: d4xdda2, d4xdda3, d4xdda4, d4xddb2, d4xddb3, d4xddb4
        automated match to d3c8ya2
        complexed with cl, fes, gol, mg, sf4
      2. 2160178Domain d4xddb1: 4xdd B:1-126 [279357]
        Other proteins in same PDB: d4xdda2, d4xdda3, d4xdda4, d4xddb2, d4xddb3, d4xddb4
        automated match to d3c8ya2
        complexed with cl, fes, gol, mg, sf4
    3. Domains for 5byq:
      1. 2160181Domain d5byqa1: 5byq A:2-126 [279210]
        Other proteins in same PDB: d5byqa2, d5byqa3, d5byqa4, d5byqb2, d5byqb3, d5byqb4
        automated match to d3c8ya2
        complexed with 4wv, fes, gol, mg, sf4
      2. 2160182Domain d5byqb1: 5byq B:2-126 [279213]
        Other proteins in same PDB: d5byqa2, d5byqa3, d5byqa4, d5byqb2, d5byqb3, d5byqb4
        automated match to d3c8ya2
        complexed with 4wv, fes, gol, mg, sf4
    4. Domains for 5byr:
      1. 2160183Domain d5byra1: 5byr A:2-126 [279219]
        Other proteins in same PDB: d5byra2, d5byra3, d5byrb2, d5byrb3
        automated match to d3c8ya2
        complexed with 4ww, fes, gol, mg, sf4
      2. 2160184Domain d5byrb1: 5byr B:2-126 [279216]
        Other proteins in same PDB: d5byra2, d5byra3, d5byrb2, d5byrb3
        automated match to d3c8ya2
        complexed with 4ww, fes, gol, mg, sf4
    5. Domains for 5bys:
      1. 2160185Domain d5bysa1: 5bys A:2-126 [279222]
        Other proteins in same PDB: d5bysa2, d5bysa3, d5bysa4, d5bysb2, d5bysb3
        automated match to d3c8ya2
        complexed with 4wx, fes, mg, sf4
      2. 2160186Domain d5bysb1: 5bys B:2-126 [279204]
        Other proteins in same PDB: d5bysa2, d5bysa3, d5bysa4, d5bysb2, d5bysb3
        automated match to d3c8ya2
        complexed with 4wx, fes, mg, sf4
    6. Domains for 5la3:
      1. 2292337Domain d5la3b1: 5la3 B:3-126 [335638]
        Other proteins in same PDB: d5la3a2, d5la3a3, d5la3a4, d5la3b2, d5la3b3, d5la3b4
        automated match to d3c8ya2
        complexed with 402, fes, mg, sf4
      2. 2292342Domain d5la3a1: 5la3 A:2-126 [335643]
        Other proteins in same PDB: d5la3a2, d5la3a3, d5la3a4, d5la3b2, d5la3b3, d5la3b4
        automated match to d3c8ya2
        complexed with 402, fes, mg, sf4
    7. Domains for 5oef:
      1. 2298785Domain d5oefb1: 5oef B:2-126 [342086]
        Other proteins in same PDB: d5oefa2, d5oefa3, d5oefb2, d5oefb3
        automated match to d3c8ya2
        complexed with 9sq, fes, mg, sf4
      2. 2298814Domain d5oefa1: 5oef A:1-126 [342115]
        Other proteins in same PDB: d5oefa2, d5oefa3, d5oefb2, d5oefb3
        automated match to d3c8ya2
        complexed with 9sq, fes, mg, sf4
  3. 2160187Desulfovibrio gigas [TaxId:879] [311144] (1 PDB entry)
  4. 2160189Ehrlichia chaffeensis [TaxId:205920] [311224] (1 PDB entry)
  5. 2160191Eubacterium barkeri [TaxId:1528] [225695] (1 PDB entry)
  6. 2160194Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [189445] (1 PDB entry)
  7. 2160197Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [236409] (2 PDB entries)
    1. Domain for 2mh7:
    2. Domain for 4itk:
  8. 2160200Human (Homo sapiens) [TaxId:9606] [189894] (1 PDB entry)
  9. 2160203Novosphingobium aromaticivorans [TaxId:279238] [189373] (1 PDB entry)
  10. 2160209Pig (Sus scrofa) [TaxId:9823] [255742] (5 PDB entries)
    1. Domain for 3ae1:
    2. Domain for 3ae2:
    3. Domain for 3aeb:
    4. Domain for 4ytp:
    5. Domain for 4yxd:
  11. 2160214Pig roundworm (Ascaris suum) [TaxId:6253] [256141] (8 PDB entries)
    1. Domains for 3vr8:
      1. 2160217Domain d3vr8b1: 3vr8 B:33-138 [250651]
        Other proteins in same PDB: d3vr8b2, d3vr8f2
        automated match to d1zoyb1
        complexed with eph, f3s, fad, fes, hem, mli, rqx, sf4
      2. 2160218Domain d3vr8f1: 3vr8 F:33-138 [250653]
        Other proteins in same PDB: d3vr8b2, d3vr8f2
        automated match to d1zoyb1
        complexed with eph, f3s, fad, fes, hem, mli, rqx, sf4
    2. Domains for 3vr9:
      1. 2160227Domain d3vr9b1: 3vr9 B:33-138 [250655]
        Other proteins in same PDB: d3vr9b2, d3vr9f2
        automated match to d1zoyb1
        complexed with eph, f3s, fad, fes, ftn, hem, mli, sf4
      2. 2160228Domain d3vr9f1: 3vr9 F:33-138 [250657]
        Other proteins in same PDB: d3vr9b2, d3vr9f2
        automated match to d1zoyb1
        complexed with eph, f3s, fad, fes, ftn, hem, mli, sf4
    3. Domains for 3vrb:
      1. 2160223Domain d3vrbb1: 3vrb B:33-138 [250659]
        Other proteins in same PDB: d3vrbb2, d3vrbf2
        automated match to d1zoyb1
        complexed with eph, f3s, fad, fes, ftn, fum, hem, sf4
      2. 2160224Domain d3vrbf1: 3vrb F:33-138 [250661]
        Other proteins in same PDB: d3vrbb2, d3vrbf2
        automated match to d1zoyb1
        complexed with eph, f3s, fad, fes, ftn, fum, hem, sf4
    4. Domains for 4ysx:
      1. 2160215Domain d4ysxb1: 4ysx B:33-138 [275741]
        Other proteins in same PDB: d4ysxb2, d4ysxf2
        automated match to d3vrbb1
        complexed with e23, eph, f3s, fad, fes, hem, mli, sf4
      2. 2160216Domain d4ysxf1: 4ysx F:31-138 [275743]
        Other proteins in same PDB: d4ysxb2, d4ysxf2
        automated match to d3vrbb1
        complexed with e23, eph, f3s, fad, fes, hem, mli, sf4
    5. Domains for 4ysy:
      1. 2160225Domain d4ysyb1: 4ysy B:33-138 [275737]
        Other proteins in same PDB: d4ysyb2, d4ysyf2
        automated match to d3vrbb1
        complexed with e24, eph, f3s, fad, fes, hem, mli, sf4
      2. 2160226Domain d4ysyf1: 4ysy F:33-138 [275739]
        Other proteins in same PDB: d4ysyb2, d4ysyf2
        automated match to d3vrbb1
        complexed with e24, eph, f3s, fad, fes, hem, mli, sf4
    6. Domains for 4ytn:
      1. 2160221Domain d4ytnb1: 4ytn B:33-138 [275747]
        Other proteins in same PDB: d4ytnb2, d4ytnf2
        automated match to d3vrbb1
        complexed with f3s, fad, fd8, fes, hem, mli, sf4
      2. 2160222Domain d4ytnf1: 4ytn F:33-138 [275750]
        Other proteins in same PDB: d4ytnb2, d4ytnf2
        automated match to d3vrbb1
        complexed with f3s, fad, fd8, fes, hem, mli, sf4
    7. Domains for 5c2t:
      1. 2160219Domain d5c2tb1: 5c2t B:33-138 [275580]
        Other proteins in same PDB: d5c2tb2, d5c2tf2
        automated match to d3vrbb1
        complexed with 4yp, eph, f3s, fad, fes, hem, mli, sf4
      2. 2160220Domain d5c2tf1: 5c2t F:33-138 [275582]
        Other proteins in same PDB: d5c2tb2, d5c2tf2
        automated match to d3vrbb1
        complexed with 4yp, eph, f3s, fad, fes, hem, mli, sf4
    8. Domains for 5c3j:
      1. 2275404Domain d5c3jb1: 5c3j B:33-138 [318705]
        Other proteins in same PDB: d5c3jb2, d5c3jf2
        automated match to d4ysxb1
        complexed with eph, f3s, fad, fes, hem, mli, sf4, uq1
      2. 2275531Domain d5c3jf1: 5c3j F:33-138 [318832]
        Other proteins in same PDB: d5c3jb2, d5c3jf2
        automated match to d4ysxb1
        complexed with eph, f3s, fad, fes, hem, mli, sf4, uq1
  12. 2160229Pseudomonas putida [TaxId:303] [189910] (1 PDB entry)
  13. 2160231Rhodobacter capsulatus [TaxId:1061] [255635] (2 PDB entries)
    1. Domains for 2w3r:
      1. 2160236Domain d2w3ra1: 2w3r A:1-84 [238896]
        Other proteins in same PDB: d2w3ra2, d2w3ra3, d2w3ra4, d2w3rb1, d2w3rb2, d2w3rc2, d2w3rc3, d2w3rc4, d2w3rd1, d2w3rd2, d2w3re2, d2w3re3, d2w3re4, d2w3rf1, d2w3rf2, d2w3rg2, d2w3rg3, d2w3rg4, d2w3rh1, d2w3rh2
        automated match to d1jroa2
        complexed with ca, fad, fes, hpa, mom, mte
      2. 2160237Domain d2w3rc1: 2w3r C:1-84 [238900]
        Other proteins in same PDB: d2w3ra2, d2w3ra3, d2w3ra4, d2w3rb1, d2w3rb2, d2w3rc2, d2w3rc3, d2w3rc4, d2w3rd1, d2w3rd2, d2w3re2, d2w3re3, d2w3re4, d2w3rf1, d2w3rf2, d2w3rg2, d2w3rg3, d2w3rg4, d2w3rh1, d2w3rh2
        automated match to d1jroa2
        complexed with ca, fad, fes, hpa, mom, mte
      3. 2160238Domain d2w3re1: 2w3r E:1-84 [238904]
        Other proteins in same PDB: d2w3ra2, d2w3ra3, d2w3ra4, d2w3rb1, d2w3rb2, d2w3rc2, d2w3rc3, d2w3rc4, d2w3rd1, d2w3rd2, d2w3re2, d2w3re3, d2w3re4, d2w3rf1, d2w3rf2, d2w3rg2, d2w3rg3, d2w3rg4, d2w3rh1, d2w3rh2
        automated match to d1jroa2
        complexed with ca, fad, fes, hpa, mom, mte
      4. 2160239Domain d2w3rg1: 2w3r G:1-84 [238908]
        Other proteins in same PDB: d2w3ra2, d2w3ra3, d2w3ra4, d2w3rb1, d2w3rb2, d2w3rc2, d2w3rc3, d2w3rc4, d2w3rd1, d2w3rd2, d2w3re2, d2w3re3, d2w3re4, d2w3rf1, d2w3rf2, d2w3rg2, d2w3rg3, d2w3rg4, d2w3rh1, d2w3rh2
        automated match to d1jroa2
        complexed with ca, fad, fes, hpa, mom, mte
    2. Domains for 2w3s:
      1. 2160232Domain d2w3sa1: 2w3s A:1-84 [238912]
        Other proteins in same PDB: d2w3sa2, d2w3sa3, d2w3sa4, d2w3sb1, d2w3sb2, d2w3sc2, d2w3sc3, d2w3sc4, d2w3sd1, d2w3sd2, d2w3se2, d2w3se3, d2w3se4, d2w3sf1, d2w3sf2, d2w3sg2, d2w3sg3, d2w3sg4, d2w3sh1, d2w3sh2
        automated match to d1jroa2
        complexed with ca, fad, fes, mom, mte, xan
      2. 2160233Domain d2w3sc1: 2w3s C:1-84 [238916]
        Other proteins in same PDB: d2w3sa2, d2w3sa3, d2w3sa4, d2w3sb1, d2w3sb2, d2w3sc2, d2w3sc3, d2w3sc4, d2w3sd1, d2w3sd2, d2w3se2, d2w3se3, d2w3se4, d2w3sf1, d2w3sf2, d2w3sg2, d2w3sg3, d2w3sg4, d2w3sh1, d2w3sh2
        automated match to d1jroa2
        complexed with ca, fad, fes, mom, mte, xan
      3. 2160234Domain d2w3se1: 2w3s E:1-84 [238920]
        Other proteins in same PDB: d2w3sa2, d2w3sa3, d2w3sa4, d2w3sb1, d2w3sb2, d2w3sc2, d2w3sc3, d2w3sc4, d2w3sd1, d2w3sd2, d2w3se2, d2w3se3, d2w3se4, d2w3sf1, d2w3sf2, d2w3sg2, d2w3sg3, d2w3sg4, d2w3sh1, d2w3sh2
        automated match to d1jroa2
        complexed with ca, fad, fes, mom, mte, xan
      4. 2160235Domain d2w3sg1: 2w3s G:1-84 [238924]
        Other proteins in same PDB: d2w3sa2, d2w3sa3, d2w3sa4, d2w3sb1, d2w3sb2, d2w3sc2, d2w3sc3, d2w3sc4, d2w3sd1, d2w3sd2, d2w3se2, d2w3se3, d2w3se4, d2w3sf1, d2w3sf2, d2w3sg2, d2w3sg3, d2w3sg4, d2w3sh1, d2w3sh2
        automated match to d1jroa2
        complexed with ca, fad, fes, mom, mte, xan
  14. 2160240Rhodopseudomonas palustris [TaxId:1076] [225824] (1 PDB entry)
  15. 2160242Rhodopseudomonas palustris [TaxId:316058] [260314] (1 PDB entry)
  16. 2160245Thermus thermophilus HB8 [TaxId:300852] [255888] (3 PDB entries)
    1. Domains for 3i9v:
      1. 2160248Domain d3i9v31: 3i9v 3:1-95 [246755]
        Other proteins in same PDB: d3i9v11, d3i9v12, d3i9v13, d3i9v2_, d3i9v32, d3i9v33, d3i9v34, d3i9v4_, d3i9v5_, d3i9v6_, d3i9v7_, d3i9v9_, d3i9va1, d3i9va2, d3i9va3, d3i9vb_, d3i9vc2, d3i9vc3, d3i9vc4, d3i9vd_, d3i9ve_, d3i9vf_, d3i9vg_, d3i9vh_
        automated match to d2fug33
        complexed with ca, fes, fmn, mn, sf4
      2. 2160249Domain d3i9vc1: 3i9v C:1-95 [246768]
        Other proteins in same PDB: d3i9v11, d3i9v12, d3i9v13, d3i9v2_, d3i9v32, d3i9v33, d3i9v34, d3i9v4_, d3i9v5_, d3i9v6_, d3i9v7_, d3i9v9_, d3i9va1, d3i9va2, d3i9va3, d3i9vb_, d3i9vc2, d3i9vc3, d3i9vc4, d3i9vd_, d3i9ve_, d3i9vf_, d3i9vg_, d3i9vh_
        automated match to d2fug33
        complexed with ca, fes, fmn, mn, sf4
    2. Domains for 3iam:
      1. 2160246Domain d3iam31: 3iam 3:1-95 [246781]
        Other proteins in same PDB: d3iam11, d3iam12, d3iam13, d3iam2_, d3iam32, d3iam33, d3iam34, d3iam4_, d3iam5_, d3iam6_, d3iam7_, d3iam9_, d3iama1, d3iama2, d3iama3, d3iamb_, d3iamc2, d3iamc3, d3iamc4, d3iamd_, d3iame_, d3iamf_, d3iamg_, d3iamh_
        automated match to d2fug33
        complexed with ca, fes, fmn, mg, nai, sf4
      2. 2160247Domain d3iamc1: 3iam C:1-95 [246794]
        Other proteins in same PDB: d3iam11, d3iam12, d3iam13, d3iam2_, d3iam32, d3iam33, d3iam34, d3iam4_, d3iam5_, d3iam6_, d3iam7_, d3iam9_, d3iama1, d3iama2, d3iama3, d3iamb_, d3iamc2, d3iamc3, d3iamc4, d3iamd_, d3iame_, d3iamf_, d3iamg_, d3iamh_
        automated match to d2fug33
        complexed with ca, fes, fmn, mg, nai, sf4
    3. Domains for 3ias:
      1. 2160250Domain d3ias31: 3ias 3:1-95 [246847]
        Other proteins in same PDB: d3ias11, d3ias12, d3ias13, d3ias2_, d3ias32, d3ias33, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa2, d3iasa3, d3iasb_, d3iasc2, d3iasc3, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj2, d3iasj3, d3iask_, d3iasl2, d3iasl3, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass2, d3iass3, d3iast_, d3iasu2, d3iasu3, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
        automated match to d2fug33
        complexed with ca, fes, fmn, sf4
      2. 2160251Domain d3iasc1: 3ias C:1-95 [246860]
        Other proteins in same PDB: d3ias11, d3ias12, d3ias13, d3ias2_, d3ias32, d3ias33, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa2, d3iasa3, d3iasb_, d3iasc2, d3iasc3, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj2, d3iasj3, d3iask_, d3iasl2, d3iasl3, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass2, d3iass3, d3iast_, d3iasu2, d3iasu3, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
        automated match to d2fug33
        complexed with ca, fes, fmn, sf4
      3. 2160252Domain d3iasl1: 3ias L:1-95 [246873]
        Other proteins in same PDB: d3ias11, d3ias12, d3ias13, d3ias2_, d3ias32, d3ias33, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa2, d3iasa3, d3iasb_, d3iasc2, d3iasc3, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj2, d3iasj3, d3iask_, d3iasl2, d3iasl3, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass2, d3iass3, d3iast_, d3iasu2, d3iasu3, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
        automated match to d2fug33
        complexed with ca, fes, fmn, sf4
      4. 2160253Domain d3iasu1: 3ias U:1-95 [246886]
        Other proteins in same PDB: d3ias11, d3ias12, d3ias13, d3ias2_, d3ias32, d3ias33, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa2, d3iasa3, d3iasb_, d3iasc2, d3iasc3, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj2, d3iasj3, d3iask_, d3iasl2, d3iasl3, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass2, d3iass3, d3iast_, d3iasu2, d3iasu3, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
        automated match to d2fug33
        complexed with ca, fes, fmn, sf4
  17. 2269072Sulfolobus tokodaii [TaxId:273063] [312378] (1 PDB entry)
  18. 2278757Arabidopsis thaliana [TaxId:3702] [322058] (1 PDB entry)
  19. 2278790Solanum tuberosum [TaxId:4113] [322091] (1 PDB entry)
  20. 2280001Escherichia coli [TaxId:83333] [323302] (2 PDB entries)
    1. Domain for 5g5g:
    2. Domain for 5g5h:
  21. 2286025Encephalitozoon cuniculi [TaxId:6035] [329326] (1 PDB entry)

More info for Protein automated matches from d.15.4.0: automated matches

Timeline for Protein automated matches from d.15.4.0: automated matches: