Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2509610Fold d.26: FKBP-like [54533] (3 superfamilies)
    core: beta(2)-alpha-beta(2); antiparallel beta-sheet
  4. 2509611Superfamily d.26.1: FKBP-like [54534] (4 families) (S)
  5. 2509932Family d.26.1.0: automated matches [191631] (1 protein)
    not a true family
  6. 2509933Protein automated matches [191162] (27 species)
    not a true protein

Species:

  1. 2509934Bacillus subtilis [TaxId:1423] [255009] (1 PDB entry)
  2. 2509936Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [256200] (1 PDB entry)
  3. 2509938Burkholderia pseudomallei [TaxId:272560] [226139] (3 PDB entries)
    1. Domain for 2ko7:
    2. Domain for 2l2s:
    3. Domain for 2y78:
  4. 2509942Burkholderia pseudomallei [TaxId:28450] [255338] (1 PDB entry)
  5. 2509944Burkholderia pseudomallei [TaxId:320372] [195739] (2 PDB entries)
    1. Domains for 4dz2:
      1. 2509947Domain d4dz2a1: 4dz2 A:2-113 [201764]
        Other proteins in same PDB: d4dz2a2, d4dz2b2
        automated match to d4dz2b_
        complexed with ca, fk5; mutant
      2. 2509948Domain d4dz2b1: 4dz2 B:2-113 [195740]
        Other proteins in same PDB: d4dz2a2, d4dz2b2
        automated match to d1fkla_
        complexed with ca, fk5; mutant
    2. Domains for 4dz3:
      1. 2509945Domain d4dz3a1: 4dz3 A:2-113 [201765]
        Other proteins in same PDB: d4dz3a2, d4dz3b2
        automated match to d4dz3b_
        complexed with act, ca, edo, fk5; mutant
      2. 2509946Domain d4dz3b1: 4dz3 B:2-113 [195741]
        Other proteins in same PDB: d4dz3a2, d4dz3b2
        automated match to d1fkla_
        complexed with act, ca, edo, fk5; mutant
  6. 2509949Candida albicans [TaxId:237561] [322564] (5 PDB entries)
    1. Domains for 5htg:
      1. 2509956Domain d5htga_: 5htg A: [322589]
        automated match to d4iq2a_
      2. 2509957Domain d5htgb_: 5htg B: [322570]
        automated match to d4iq2a_
    2. Domains for 5hw6:
      1. 2509954Domain d5hw6a_: 5hw6 A: [322573]
        automated match to d4iq2a_
        complexed with act
      2. 2509955Domain d5hw6b_: 5hw6 B: [322588]
        automated match to d4iq2a_
        complexed with act
    3. Domains for 5hw7:
      1. 2509952Domain d5hw7a_: 5hw7 A: [322595]
        automated match to d4iq2a_
      2. 2509953Domain d5hw7b_: 5hw7 B: [322598]
        automated match to d4iq2a_
    4. Domains for 5hw8:
      1. 2509958Domain d5hw8a_: 5hw8 A: [322565]
        automated match to d4iq2a_
        complexed with fk5
      2. 2509959Domain d5hw8b_: 5hw8 B: [322590]
        automated match to d4iq2a_
        complexed with fk5
      3. 2509960Domain d5hw8c_: 5hw8 C: [322706]
        automated match to d4iq2a_
        complexed with fk5
      4. 2509961Domain d5hw8d_: 5hw8 D: [322628]
        automated match to d4iq2a_
        complexed with fk5
      5. 2509962Domain d5hw8e_: 5hw8 E: [322611]
        automated match to d4iq2a_
        complexed with fk5
      6. 2509963Domain d5hw8f_: 5hw8 F: [322646]
        automated match to d4iq2a_
        complexed with fk5
      7. 2509964Domain d5hw8g_: 5hw8 G: [322677]
        automated match to d4iq2a_
        complexed with fk5
      8. 2509965Domain d5hw8h_: 5hw8 H: [322704]
        automated match to d4iq2a_
        complexed with fk5
    5. Domains for 5i98:
      1. 2509950Domain d5i98a_: 5i98 A: [322649]
        automated match to d4iq2a_
      2. 2509951Domain d5i98b_: 5i98 B: [322569]
        automated match to d4iq2a_
  7. 2509966Cenarchaeum symbiosum [TaxId:46770] [255473] (2 PDB entries)
    1. Domain for 2m1i:
    2. Domain for 2rqs:
  8. 2509969Coccidioides immitis [TaxId:246410] [272842] (1 PDB entry)
  9. 2509971Escherichia coli [TaxId:1403831] [256440] (3 PDB entries)
    1. Domain for 2mlx:
    2. Domain for 2mly:
    3. Domain for 2mlz:
  10. 2509975Escherichia coli [TaxId:562] [225399] (3 PDB entries)
    1. Domains for 2p4v:
      1. 2509976Domain d2p4va2: 2p4v A:80-156 [205440]
        Other proteins in same PDB: d2p4va1, d2p4vb1, d2p4vc1, d2p4vd1, d2p4ve1, d2p4vf1
        automated match to d1grja2
      2. 2509977Domain d2p4vb2: 2p4v B:80-156 [205442]
        Other proteins in same PDB: d2p4va1, d2p4vb1, d2p4vc1, d2p4vd1, d2p4ve1, d2p4vf1
        automated match to d1grja2
      3. 2509978Domain d2p4vc2: 2p4v C:80-156 [205444]
        Other proteins in same PDB: d2p4va1, d2p4vb1, d2p4vc1, d2p4vd1, d2p4ve1, d2p4vf1
        automated match to d1grja2
      4. 2509979Domain d2p4vd2: 2p4v D:80-156 [205446]
        Other proteins in same PDB: d2p4va1, d2p4vb1, d2p4vc1, d2p4vd1, d2p4ve1, d2p4vf1
        automated match to d1grja2
      5. 2509980Domain d2p4ve2: 2p4v E:80-156 [205448]
        Other proteins in same PDB: d2p4va1, d2p4vb1, d2p4vc1, d2p4vd1, d2p4ve1, d2p4vf1
        automated match to d1grja2
      6. 2509981Domain d2p4vf2: 2p4v F:80-156 [205450]
        Other proteins in same PDB: d2p4va1, d2p4vb1, d2p4vc1, d2p4vd1, d2p4ve1, d2p4vf1
        automated match to d1grja2
    2. Domains for 5owi:
      1. 2509982Domain d5owia2: 5owi A:132-247 [342141]
        Other proteins in same PDB: d5owia1, d5owia3, d5owib1, d5owib3
        automated match to d1w26a3
      2. 2509983Domain d5owib2: 5owi B:132-247 [342132]
        Other proteins in same PDB: d5owia1, d5owia3, d5owib1, d5owib3
        automated match to d1w26a3
    3. Domains for 5owj:
      1. 2509984Domain d5owja2: 5owj A:132-247 [342136]
        Other proteins in same PDB: d5owja1, d5owja3, d5owjb1, d5owjb3
        automated match to d1w26a3
      2. 2509985Domain d5owjb2: 5owj B:132-247 [342210]
        Other proteins in same PDB: d5owja1, d5owja3, d5owjb1, d5owjb3
        automated match to d1w26a3
  11. 2509986Escherichia coli [TaxId:83333] [267790] (1 PDB entry)
  12. 2509988Human (Homo sapiens) [TaxId:9606] [225017] (10 PDB entries)
    1. Domain for 2awg:
    2. Domain for 2d9f:
    3. Domain for 2f2d:
    4. Domain for 2nd5:
    5. Domains for 2pbc:
      1. 2510001Domain d2pbca1: 2pbc A:43-140 [243465]
        Other proteins in same PDB: d2pbca2, d2pbcb2, d2pbcc2, d2pbcd2
        automated match to d4nnrb_
        complexed with peg
      2. 2510002Domain d2pbcb1: 2pbc B:43-139 [243466]
        Other proteins in same PDB: d2pbca2, d2pbcb2, d2pbcc2, d2pbcd2
        automated match to d4nnrb_
        complexed with peg
      3. 2510003Domain d2pbcc1: 2pbc C:43-140 [243467]
        Other proteins in same PDB: d2pbca2, d2pbcb2, d2pbcc2, d2pbcd2
        automated match to d4nnrb_
        complexed with peg
      4. 2510004Domain d2pbcd1: 2pbc D:43-139 [243468]
        Other proteins in same PDB: d2pbca2, d2pbcb2, d2pbcc2, d2pbcd2
        automated match to d4nnrb_
        complexed with peg
    6. Domain for 3b7x:
    7. Domain for 3ey6:
    8. Domain for 4c02:
    9. Domains for 4dip:
      1. 2509991Domain d4dipa1: 4dip A:19-138 [234318]
        Other proteins in same PDB: d4dipa2, d4dipb2, d4dipi2
        automated match to d2y78a_
        complexed with na, po4
      2. 2509992Domain d4dipb1: 4dip B:19-138 [234320]
        Other proteins in same PDB: d4dipa2, d4dipb2, d4dipi2
        automated match to d2y78a_
        complexed with na, po4
      3. 2509993Domain d4dipc_: 4dip C: [234321]
        Other proteins in same PDB: d4dipa2, d4dipb2, d4dipi2
        automated match to d2y78a_
        complexed with na, po4
      4. 2509994Domain d4dipd_: 4dip D: [234319]
        Other proteins in same PDB: d4dipa2, d4dipb2, d4dipi2
        automated match to d2y78a_
        complexed with na, po4
      5. 2509995Domain d4dipe_: 4dip E: [234322]
        Other proteins in same PDB: d4dipa2, d4dipb2, d4dipi2
        automated match to d2y78a_
        complexed with na, po4
      6. 2509996Domain d4dipf_: 4dip F: [240063]
        Other proteins in same PDB: d4dipa2, d4dipb2, d4dipi2
        automated match to d4dipa_
        complexed with na, po4
      7. 2509997Domain d4dipg_: 4dip G: [240064]
        Other proteins in same PDB: d4dipa2, d4dipb2, d4dipi2
        automated match to d4dipa_
        complexed with na, po4
      8. 2509998Domain d4diph_: 4dip H: [240065]
        Other proteins in same PDB: d4dipa2, d4dipb2, d4dipi2
        automated match to d4dipa_
        complexed with na, po4
      9. 2509999Domain d4dipi1: 4dip I:19-137 [240066]
        Other proteins in same PDB: d4dipa2, d4dipb2, d4dipi2
        automated match to d4dipa_
        complexed with na, po4
      10. 2510000Domain d4dipj_: 4dip J: [240067]
        Other proteins in same PDB: d4dipa2, d4dipb2, d4dipi2
        automated match to d4dipa_
        complexed with na, po4
    10. Domains for 4nnr:
      1. 2510006Domain d4nnra_: 4nnr A: [236624]
        automated match to d3kz7a_
        complexed with fk5
      2. 2510007Domain d4nnrb_: 4nnr B: [236623]
        automated match to d3kz7a_
        complexed with fk5
  13. 2510012Legionella pneumophila [TaxId:446] [255596] (2 PDB entries)
    1. Domain for 2uz5:
    2. Domain for 2vcd:
  14. 2510015Methanocaldococcus jannaschii [TaxId:2190] [189612] (2 PDB entries)
    1. Domain for 3pr9:
    2. Domains for 3pra:
      1. 2510017Domain d3praa_: 3pra A: [183932]
        automated match to d1ix5a_
      2. 2510018Domain d3prab_: 3pra B: [183933]
        automated match to d1ix5a_
  15. 2510019Naegleria fowleri [TaxId:5763] [339972] (1 PDB entry)
  16. 2510022Neosartorya fumigata [TaxId:330879] [322576] (2 PDB entries)
    1. Domains for 5hwb:
      1. 2510024Domain d5hwba_: 5hwb A: [322591]
        Other proteins in same PDB: d5hwbb2
        automated match to d5b8ic_
        complexed with so4
      2. 2510025Domain d5hwbb1: 5hwb B:1-112 [322730]
        Other proteins in same PDB: d5hwbb2
        automated match to d5b8ic_
        complexed with so4
    2. Domain for 5hwc:
  17. 2510026Nitrosopumilus maritimus [TaxId:436308] [256402] (1 PDB entry)
  18. 2510028Plasmodium falciparum [TaxId:36329] [195450] (5 PDB entries)
    1. Domain for 2ofn:
    2. Domains for 2vn1:
      1. 2510031Domain d2vn1a1: 2vn1 A:7-127 [198452]
        Other proteins in same PDB: d2vn1a2, d2vn1b2
        automated match to d2vn1b_
        complexed with fk5
      2. 2510032Domain d2vn1b1: 2vn1 B:6-127 [195451]
        Other proteins in same PDB: d2vn1a2, d2vn1b2
        automated match to d3ni6a_
        complexed with fk5
    3. Domains for 4j4n:
      1. 2510033Domain d4j4na1: 4j4n A:7-127 [227877]
        Other proteins in same PDB: d4j4na2, d4j4nb2
        automated match to d2vn1b_
        complexed with d44
      2. 2510034Domain d4j4nb1: 4j4n B:7-127 [227876]
        Other proteins in same PDB: d4j4na2, d4j4nb2
        automated match to d2vn1b_
        complexed with d44
      3. 2510035Domain d4j4nc_: 4j4n C: [227878]
        Other proteins in same PDB: d4j4na2, d4j4nb2
        automated match to d2vn1b_
        complexed with d44
    4. Domain for 4qt2:
    5. Domain for 4qt3:
  19. 2510037Plasmodium vivax [TaxId:126793] [227874] (2 PDB entries)
    1. Domain for 4j4o:
    2. Domains for 4jys:
      1. 2510039Domain d4jysa_: 4jys A: [240367]
        automated match to d4jysb_
        complexed with cl, imd
      2. 2510040Domain d4jysb_: 4jys B: [236737]
        automated match to d4dz3b_
        complexed with cl, imd
  20. 2510041Plasmodium vivax [TaxId:5855] [189364] (5 PDB entries)
    1. Domain for 2ki3:
    2. Domains for 3ihz:
      1. 2510046Domain d3ihza_: 3ihz A: [178329]
        automated match to d1r9ha_
        complexed with fk5
      2. 2510047Domain d3ihzb_: 3ihz B: [178330]
        automated match to d1r9ha_
        complexed with fk5
    3. Domains for 3ni6:
      1. 2510042Domain d3ni6a_: 3ni6 A: [182311]
        automated match to d1r9ha_
        complexed with gol
      2. 2510043Domain d3ni6b_: 3ni6 B: [182312]
        automated match to d1r9ha_
        complexed with gol
    4. Domains for 4itz:
      1. 2510044Domain d4itza_: 4itz A: [202677]
        automated match to d3ihza_
        complexed with so4
      2. 2510045Domain d4itzb_: 4itz B: [193101]
        automated match to d3ni6a_
        complexed with so4
    5. Domain for 4mgv:
  21. 2510050Pseudomonas syringae [TaxId:223283] [189717] (1 PDB entry)
  22. 2510052Salmonella enterica [TaxId:588858] [226427] (1 PDB entry)
  23. 2510055Staphylococcus aureus [TaxId:1280] [255309] (1 PDB entry)
  24. 2510057Thale cress (Arabidopsis thaliana) [TaxId:3702] [225164] (2 PDB entries)
    1. Domains for 2f4e:
      1. 2510058Domain d2f4ea_: 2f4e A: [241807]
        automated match to d4j4oa_
      2. 2510059Domain d2f4eb_: 2f4e B: [241808]
        automated match to d4j4oa_
    2. Domain for 2if4:
  25. 2510061Trypanosoma brucei [TaxId:185431] [324134] (1 PDB entry)
  26. 2510063Trypanosoma brucei [TaxId:999953] [271392] (1 PDB entry)
  27. 2510065Trypanosome (Trypanosoma brucei) [TaxId:5691] [255439] (1 PDB entry)

More info for Protein automated matches from d.26.1.0: automated matches

Timeline for Protein automated matches from d.26.1.0: automated matches: