SCOPe 2.05: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.05
Class a: All alpha proteins [46456] (286 folds)
Fold a.28: Acyl carrier protein-like [47335] (3 superfamilies)
4 helices, bundle; helix 3 is shorter than others; up-and-down
Superfamily a.28.3: Retrovirus capsid dimerization domain-like [47353] (3 families)
Family a.28.3.0: automated matches [191629] (1 protein)
not a true family
Protein automated matches [191156] (8 species)
not a true protein

Species:

Bovine leukemia virus [TaxId:11901] [273638] (1 PDB entry)
- Domains for 4ph0:
  1. Domain d4ph0a2: 4ph0 A:132-206 [273641]
    Other proteins in same PDB: d4ph0a1, d4ph0d1
    automated match to d1qrja1
  2. Domain d4ph0d2: 4ph0 D:133-205 [273639]
    Other proteins in same PDB: d4ph0a1, d4ph0d1
    automated match to d1qrja1
Human (Homo sapiens) [TaxId:9606] [189328] (2 PDB entries)
1. Domains for 3lhr:
  1. Domain d3lhra_: 3lhr A: [180288]
    automated match to d1y7qa1
    complexed with cl, emc, mg, peg
  2. Domain d3lhrb_: 3lhr B: [180289]
    automated match to d1y7qa1
    complexed with cl, emc, mg, peg
2. Domains for 4bhx:
  1. Domain d4bhxa_: 4bhx A: [196820]
    automated match to d3lhra_
    complexed with edo, peg, pge
  2. Domain d4bhxb_: 4bhx B: [201624]
    automated match to d4bhxa_
    complexed with edo, peg, pge
Human immunodeficiency virus 1 [TaxId:11676] [233043] (3 PDB entries)
1. Domain for 2lf4:
  - Domain d2lf4a2: 2lf4 A:148-231 [242867]
    Other proteins in same PDB: d2lf4a1
    automated match to d3ntea2
    mutant
2. Domains for 3nte:
  1. Domain d3ntea2: 3nte A:148-221 [233046]
    Other proteins in same PDB: d3ntea1, d3nteb1
    automated match to d1e6jp1
    complexed with fe, i3m, iod, na
  2. Domain d3nteb2: 3nte B:148-221 [233044]
    Other proteins in same PDB: d3ntea1, d3nteb1
    automated match to d1e6jp1
    complexed with fe, i3m, iod, na
3. Domains for 3p05:
  1. Domain d3p05a2: 3p05 A:148-219 [239594]
    Other proteins in same PDB: d3p05a1, d3p05b1, d3p05c1, d3p05d1, d3p05e1
    automated match to d3p05b2
    complexed with iod
  2. Domain d3p05b2: 3p05 B:148-219 [233182]
    Other proteins in same PDB: d3p05a1, d3p05b1, d3p05c1, d3p05d1, d3p05e1
    automated match to d1e6jp1
    complexed with iod
  3. Domain d3p05c2: 3p05 C:148-219 [233186]
    Other proteins in same PDB: d3p05a1, d3p05b1, d3p05c1, d3p05d1, d3p05e1
    automated match to d1e6jp1
    complexed with iod
  4. Domain d3p05e2: 3p05 E:148-219 [239596]
    Other proteins in same PDB: d3p05a1, d3p05b1, d3p05c1, d3p05d1, d3p05e1
    automated match to d3p05b2
    complexed with iod
Human immunodeficiency virus type 1 (new york-5 isolate) [TaxId:11698] [232387] (3 PDB entries)
1. Domain for 3h47:
  - Domain d3h47a2: 3h47 A:148-219 [232390]
    Other proteins in same PDB: d3h47a1
    automated match to d1e6jp1
2. Domains for 3h4e:
  1. Domain d3h4ea2: 3h4e A:148-220 [232400]
    Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
    automated match to d1e6jp1
  2. Domain d3h4eb2: 3h4e B:148-219 [232394]
    Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
    automated match to d1e6jp1
  3. Domain d3h4ec2: 3h4e C:148-219 [232403]
    Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
    automated match to d1e6jp1
  4. Domain d3h4ed2: 3h4e D:148-219 [232398]
    Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
    automated match to d1e6jp1
  5. Domain d3h4ee2: 3h4e E:148-219 [232391]
    Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
    automated match to d1e6jp1
  6. Domain d3h4ef2: 3h4e F:148-219 [232402]
    Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
    automated match to d1e6jp1
  7. Domain d3h4eg2: 3h4e G:148-220 [232401]
    Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
    automated match to d1e6jp1
  8. Domain d3h4eh2: 3h4e H:148-219 [232397]
    Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
    automated match to d1e6jp1
  9. Domain d3h4ei2: 3h4e I:148-219 [232396]
    Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
    automated match to d1e6jp1
  10. Domain d3h4ej2: 3h4e J:148-219 [232393]
    Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
    automated match to d1e6jp1
  11. Domain d3h4ek2: 3h4e K:148-219 [239334]
    Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
    automated match to d3h47a2
  12. Domain d3h4el2: 3h4e L:148-219 [239336]
    Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
    automated match to d3h47a2
3. Domain for 4qnb:
  - Domain d4qnba2: 4qnb A:148-219 [268616]
    Other proteins in same PDB: d4qnba1
    automated match to d2m8pa2
    complexed with 1b0
Human immunodeficiency virus type 1 group m subtype b (isolate ny5) [TaxId:11698] [273803] (5 PDB entries)
1. Domain for 4xfx:
  - Domain d4xfxa2: 4xfx A:148-221 [273812]
    Other proteins in same PDB: d4xfxa1
    automated match to d2m8pa2
    complexed with cl, iod
2. Domain for 4xfy:
  - Domain d4xfya2: 4xfy A:148-220 [273804]
    Other proteins in same PDB: d4xfya1
    automated match to d2m8pa2
    complexed with 1pe, cl
3. Domain for 4xfz:
  - Domain d4xfza2: 4xfz A:148-221 [273810]
    Other proteins in same PDB: d4xfza1
    automated match to d2m8pa2
    complexed with 1b0, cl, iod
4. Domain for 4xro:
  - Domain d4xroa2: 4xro A:148-219 [275065]
    Other proteins in same PDB: d4xroa1
    automated match to d2m8pa2
5. Domain for 4xrq:
  - Domain d4xrqa2: 4xrq A:148-219 [275063]
    Other proteins in same PDB: d4xrqa1
    automated match to d2m8pa2
    complexed with 1b0
Human immunodeficiency virus type 1 group m subtype b [TaxId:11698] [260980] (3 PDB entries)
1. Domain for 4u0e:
  - Domain d4u0ea2: 4u0e A:148-219 [267417]
    Other proteins in same PDB: d4u0ea1
    automated match to d2m8pa2
    complexed with 1b0, cl
2. Domain for 4u0f:
  - Domain d4u0fa2: 4u0f A:148-219 [260981]
    Other proteins in same PDB: d4u0fa1
    automated match to d2m8pa2
    complexed with 3a8, edo
3. Domains for 4wym:
  1. Domain d4wyma2: 4wym A:148-220 [262159]
    Other proteins in same PDB: d4wyma1, d4wymb1, d4wymc1, d4wymd1, d4wyme1, d4wymf1, d4wymg1, d4wymh1, d4wymi1, d4wymj1, d4wymk1, d4wyml1
    automated match to d2m8pa2
  2. Domain d4wymb2: 4wym B:148-220 [262171]
    Other proteins in same PDB: d4wyma1, d4wymb1, d4wymc1, d4wymd1, d4wyme1, d4wymf1, d4wymg1, d4wymh1, d4wymi1, d4wymj1, d4wymk1, d4wyml1
    automated match to d2m8pa2
  3. Domain d4wymc2: 4wym C:148-219 [262167]
    Other proteins in same PDB: d4wyma1, d4wymb1, d4wymc1, d4wymd1, d4wyme1, d4wymf1, d4wymg1, d4wymh1, d4wymi1, d4wymj1, d4wymk1, d4wyml1
    automated match to d2m8pa2
  4. Domain d4wymd2: 4wym D:148-219 [262161]
    Other proteins in same PDB: d4wyma1, d4wymb1, d4wymc1, d4wymd1, d4wyme1, d4wymf1, d4wymg1, d4wymh1, d4wymi1, d4wymj1, d4wymk1, d4wyml1
    automated match to d2m8pa2
  5. Domain d4wyme2: 4wym E:148-220 [262156]
    Other proteins in same PDB: d4wyma1, d4wymb1, d4wymc1, d4wymd1, d4wyme1, d4wymf1, d4wymg1, d4wymh1, d4wymi1, d4wymj1, d4wymk1, d4wyml1
    automated match to d2m8pa2
  6. Domain d4wymf2: 4wym F:148-220 [262157]
    Other proteins in same PDB: d4wyma1, d4wymb1, d4wymc1, d4wymd1, d4wyme1, d4wymf1, d4wymg1, d4wymh1, d4wymi1, d4wymj1, d4wymk1, d4wyml1
    automated match to d2m8pa2
  7. Domain d4wymg2: 4wym G:148-219 [262170]
    Other proteins in same PDB: d4wyma1, d4wymb1, d4wymc1, d4wymd1, d4wyme1, d4wymf1, d4wymg1, d4wymh1, d4wymi1, d4wymj1, d4wymk1, d4wyml1
    automated match to d2m8pa2
  8. Domain d4wymh2: 4wym H:148-219 [262173]
    Other proteins in same PDB: d4wyma1, d4wymb1, d4wymc1, d4wymd1, d4wyme1, d4wymf1, d4wymg1, d4wymh1, d4wymi1, d4wymj1, d4wymk1, d4wyml1
    automated match to d2m8pa2
  9. Domain d4wymj2: 4wym J:148-219 [262169]
    Other proteins in same PDB: d4wyma1, d4wymb1, d4wymc1, d4wymd1, d4wyme1, d4wymf1, d4wymg1, d4wymh1, d4wymi1, d4wymj1, d4wymk1, d4wyml1
    automated match to d2m8pa2
  10. Domain d4wymk2: 4wym K:148-219 [262168]
    Other proteins in same PDB: d4wyma1, d4wymb1, d4wymc1, d4wymd1, d4wyme1, d4wymf1, d4wymg1, d4wymh1, d4wymi1, d4wymj1, d4wymk1, d4wyml1
    automated match to d2m8pa2
Human immunodeficiency virus type 1 [TaxId:11698] [232917] (4 PDB entries)
1. Domains for 2m8l:
  1. Domain d2m8la2: 2m8l A:148-221 [243141]
    Other proteins in same PDB: d2m8la1, d2m8lb1
    automated match to d3ntea2
  2. Domain d2m8lb2: 2m8l B:148-221 [243143]
    Other proteins in same PDB: d2m8la1, d2m8lb1
    automated match to d3ntea2
2. Domain for 2m8n:
  - Domain d2m8na2: 2m8n A:148-221 [243145]
    Other proteins in same PDB: d2m8na1
    automated match to d3ntea2
3. Domain for 2m8p:
  - Domain d2m8pa2: 2m8p A:148-221 [243147]
    Other proteins in same PDB: d2m8pa1
    automated match to d3ntea2
    mutant
4. Domain for 3mge:
  - Domain d3mgea2: 3mge A:148-219 [232918]
    Other proteins in same PDB: d3mgea1
    automated match to d1e6jp1
    complexed with edo
Mouse (Mus musculus) [TaxId:10090] [195468] (1 PDB entry)
- Domain for 4e6s:
  - Domain d4e6sa_: 4e6s A: [195469]
    automated match to d2fi2a1

More info for Protein automated matches from a.28.3.0: automated matches

Timeline for Protein automated matches from a.28.3.0: automated matches:

Protein automated matches from a.28.3.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from a.28.3.0: automated matches appears in SCOPe 2.04
Protein automated matches from a.28.3.0: automated matches appears in SCOPe 2.06
Protein automated matches from a.28.3.0: automated matches appears in the current release, SCOPe 2.08