Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2782725Fold b.34: SH3-like barrel [50036] (21 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. 2784517Superfamily b.34.9: Tudor/PWWP/MBT [63748] (5 families) (S)
  5. 2784802Family b.34.9.0: automated matches [191625] (1 protein)
    not a true family
  6. 2784803Protein automated matches [191144] (3 species)
    not a true protein

Species:

  1. 2784804Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [255413] (1 PDB entry)
  2. 2784806Fruit fly (Drosophila melanogaster) [TaxId:7227] [231239] (5 PDB entries)
    1. Domains for 2r57:
      1. 2784814Domain d2r57a1: 2r57 A:175-281 [231240]
        Other proteins in same PDB: d2r57a3
        automated match to d1oi1a1
      2. 2784815Domain d2r57a2: 2r57 A:282-383 [231241]
        Other proteins in same PDB: d2r57a3
        automated match to d1oi1a2
    2. Domains for 2r58:
      1. 2784811Domain d2r58a1: 2r58 A:175-281 [231242]
        Other proteins in same PDB: d2r58a3
        automated match to d1oi1a1
        complexed with mly
      2. 2784812Domain d2r58a2: 2r58 A:282-385 [231243]
        Other proteins in same PDB: d2r58a3
        automated match to d1oi1a2
        complexed with mly
    3. Domains for 2r5a:
      1. 2784816Domain d2r5aa1: 2r5a A:175-281 [231244]
        Other proteins in same PDB: d2r5aa3
        automated match to d1oi1a1
        complexed with mlz
      2. 2784817Domain d2r5aa2: 2r5a A:282-385 [231245]
        Other proteins in same PDB: d2r5aa3
        automated match to d1oi1a2
        complexed with mlz
    4. Domain for 6kcu:
    5. Domains for 6kd6:
      1. 2784807Domain d6kd6a_: 6kd6 A: [388486]
        Other proteins in same PDB: d6kd6b2
        automated match to d2m16a_
      2. 2784808Domain d6kd6b1: 6kd6 B:8-91 [388497]
        Other proteins in same PDB: d6kd6b2
        automated match to d2m16a_
      3. 2784809Domain d6kd6c_: 6kd6 C: [388485]
        Other proteins in same PDB: d6kd6b2
        automated match to d2m16a_
      4. 2784810Domain d6kd6d_: 6kd6 D: [388516]
        Other proteins in same PDB: d6kd6b2
        automated match to d2m16a_
  3. 2784818Human (Homo sapiens) [TaxId:9606] [189286] (22 PDB entries)
    1. Domains for 2biv:
      1. 2784847Domain d2biva1: 2biv A:32-138 [128592]
        automated match to d1oz3a1
        complexed with iod, na
      2. 2784848Domain d2biva2: 2biv A:139-243 [128593]
        automated match to d1oz3a3
        complexed with iod, na
      3. 2784849Domain d2bivb1: 2biv B:27-133 [128594]
        automated match to d1oz3a1
        complexed with iod, na
      4. 2784850Domain d2bivb2: 2biv B:140-243 [128595]
        automated match to d1oz3a3
        complexed with iod, na
      5. 2784851Domain d2bivc1: 2biv C:32-133 [230533]
        automated match to d1oz3a1
        complexed with iod, na
      6. 2784852Domain d2bivc2: 2biv C:153-243 [230534]
        automated match to d1oz3a3
        complexed with iod, na
    2. Domains for 2p0k:
      1. 2784822Domain d2p0ka1: 2p0k A:27-133 [231111]
        automated match to d1oz3a1
        complexed with cl, po4
      2. 2784823Domain d2p0ka2: 2p0k A:134-235 [231112]
        automated match to d1oz2a2
        complexed with cl, po4
    3. Domains for 2rhx:
      1. 2784844Domain d2rhxa1: 2rhx A:204-313 [243681]
        Other proteins in same PDB: d2rhxa4
        automated match to d1oz3a1
        complexed with mly, pg4, pge, so4
      2. 2784845Domain d2rhxa2: 2rhx A:314-421 [243682]
        Other proteins in same PDB: d2rhxa4
        automated match to d1oz2a2
        complexed with mly, pg4, pge, so4
      3. 2784846Domain d2rhxa3: 2rhx A:422-526 [243683]
        Other proteins in same PDB: d2rhxa4
        automated match to d1oz3a3
        complexed with mly, pg4, pge, so4
    4. Domains for 2rhy:
      1. 2784826Domain d2rhya1: 2rhy A:206-313 [243684]
        Other proteins in same PDB: d2rhya4
        automated match to d1oz3a1
        complexed with mlz, peg
      2. 2784827Domain d2rhya2: 2rhy A:314-421 [243685]
        Other proteins in same PDB: d2rhya4
        automated match to d1oz2a2
        complexed with mlz, peg
      3. 2784828Domain d2rhya3: 2rhy A:422-519 [243686]
        Other proteins in same PDB: d2rhya4
        automated match to d1oz3a3
        complexed with mlz, peg
    5. Domains for 2rhz:
      1. 2784862Domain d2rhza1: 2rhz A:206-313 [243687]
        Other proteins in same PDB: d2rhza4
        automated match to d1oz3a1
        complexed with peg; mutant
      2. 2784863Domain d2rhza2: 2rhz A:314-421 [243688]
        Other proteins in same PDB: d2rhza4
        automated match to d1oz2a2
        complexed with peg; mutant
      3. 2784864Domain d2rhza3: 2rhz A:422-519 [243689]
        Other proteins in same PDB: d2rhza4
        automated match to d1oz3a3
        complexed with peg; mutant
    6. Domains for 2ri2:
      1. 2784859Domain d2ri2a1: 2ri2 A:206-313 [243690]
        automated match to d1oz3a1
        complexed with peg, pge, so4; mutant
      2. 2784860Domain d2ri2a2: 2ri2 A:314-421 [243691]
        automated match to d1oz2a2
        complexed with peg, pge, so4; mutant
      3. 2784861Domain d2ri2a3: 2ri2 A:422-519 [243692]
        automated match to d1oz3a3
        complexed with peg, pge, so4; mutant
    7. Domains for 2ri3:
      1. 2784841Domain d2ri3a1: 2ri3 A:206-313 [243693]
        Other proteins in same PDB: d2ri3a4
        automated match to d1oz3a1
        complexed with peg; mutant
      2. 2784842Domain d2ri3a2: 2ri3 A:314-421 [243694]
        Other proteins in same PDB: d2ri3a4
        automated match to d1oz2a2
        complexed with peg; mutant
      3. 2784843Domain d2ri3a3: 2ri3 A:422-519 [243695]
        Other proteins in same PDB: d2ri3a4
        automated match to d1oz3a3
        complexed with peg; mutant
    8. Domains for 2ri5:
      1. 2784838Domain d2ri5a1: 2ri5 A:206-313 [243696]
        automated match to d1oz3a1
        complexed with peg, pge; mutant
      2. 2784839Domain d2ri5a2: 2ri5 A:314-421 [243697]
        automated match to d1oz2a2
        complexed with peg, pge; mutant
      3. 2784840Domain d2ri5a3: 2ri5 A:422-519 [243698]
        automated match to d1oz3a3
        complexed with peg, pge; mutant
    9. Domains for 2rjc:
      1. 2784829Domain d2rjca1: 2rjc A:206-313 [243702]
        automated match to d1oz3a1
        protein/DNA complex; complexed with mes, so4
      2. 2784830Domain d2rjca2: 2rjc A:314-421 [243703]
        automated match to d1oz2a2
        protein/DNA complex; complexed with mes, so4
      3. 2784831Domain d2rjca3: 2rjc A:422-518 [243704]
        automated match to d1oz3a3
        protein/DNA complex; complexed with mes, so4
      4. 2784832Domain d2rjcb1: 2rjc B:205-309 [243705]
        automated match to d1oz3a1
        protein/DNA complex; complexed with mes, so4
      5. 2784833Domain d2rjcb2: 2rjc B:314-421 [243706]
        automated match to d1oz2a2
        protein/DNA complex; complexed with mes, so4
      6. 2784834Domain d2rjcb3: 2rjc B:422-522 [243707]
        automated match to d1oz3a3
        protein/DNA complex; complexed with mes, so4
      7. 2784835Domain d2rjcc1: 2rjc C:206-313 [243708]
        automated match to d1oz3a1
        protein/DNA complex; complexed with mes, so4
      8. 2784836Domain d2rjcc2: 2rjc C:314-416 [243709]
        automated match to d1oz2a2
        protein/DNA complex; complexed with mes, so4
      9. 2784837Domain d2rjcc3: 2rjc C:422-519 [243710]
        automated match to d1oz3a3
        protein/DNA complex; complexed with mes, so4
    10. Domains for 2rjd:
      1. 2784819Domain d2rjda1: 2rjd A:204-313 [243711]
        automated match to d1oz3a1
      2. 2784820Domain d2rjda2: 2rjd A:314-421 [243712]
        automated match to d1oz2a2
      3. 2784821Domain d2rjda3: 2rjd A:422-528 [243713]
        automated match to d1oz3a3
    11. Domains for 2xdp:
      1. 2784824Domain d2xdpa1: 2xdp A:876-935 [207183]
        automated match to d2qqra1
        complexed with so4
      2. 2784825Domain d2xdpa2: 2xdp A:936-994 [207184]
        automated match to d2qqra2
        complexed with so4
    12. Domains for 3llr:
      1. 2784869Domain d3llra_: 3llr A: [180374]
        automated match to d1khca_
        complexed with btb, so4
      2. 2784870Domain d3llrb_: 3llr B: [180375]
        automated match to d1khca_
        complexed with btb, so4
      3. 2784871Domain d3llrc_: 3llr C: [180376]
        automated match to d1khca_
        complexed with btb, so4
      4. 2784872Domain d3llrd_: 3llr D: [180377]
        automated match to d1khca_
        complexed with btb, so4
      5. 2784873Domain d3llre_: 3llr E: [180378]
        automated match to d1khca_
        complexed with btb, so4
    13. Domains for 3p8h:
      1. 2784883Domain d3p8ha1: 3p8h A:206-313 [248441]
        automated match to d1oz3a1
        complexed with gol, p8h, so4
      2. 2784884Domain d3p8ha2: 3p8h A:314-421 [248442]
        automated match to d1oz2a2
        complexed with gol, p8h, so4
      3. 2784885Domain d3p8ha3: 3p8h A:422-518 [248443]
        automated match to d1oz3a3
        complexed with gol, p8h, so4
      4. 2784886Domain d3p8hb1: 3p8h B:206-309 [248444]
        automated match to d1oz3a1
        complexed with gol, p8h, so4
      5. 2784887Domain d3p8hb2: 3p8h B:314-421 [248445]
        automated match to d1oz2a2
        complexed with gol, p8h, so4
      6. 2784888Domain d3p8hb3: 3p8h B:422-519 [248446]
        automated match to d1oz3a3
        complexed with gol, p8h, so4
      7. 2784889Domain d3p8hc1: 3p8h C:206-313 [248447]
        automated match to d1oz3a1
        complexed with gol, p8h, so4
      8. 2784890Domain d3p8hc2: 3p8h C:314-421 [248448]
        automated match to d1oz2a2
        complexed with gol, p8h, so4
      9. 2784891Domain d3p8hc3: 3p8h C:422-519 [248449]
        automated match to d1oz3a3
        complexed with gol, p8h, so4
    14. Domains for 3ut1:
      1. 2784865Domain d3ut1a1: 3ut1 A:231-339 [250266]
        automated match to d1oz3a1
        complexed with co, epe, unx
      2. 2784866Domain d3ut1a2: 3ut1 A:340-447 [250267]
        automated match to d1oz2a2
        complexed with co, epe, unx
      3. 2784867Domain d3ut1a3: 3ut1 A:448-545 [250268]
        automated match to d1oz3a3
        complexed with co, epe, unx
    15. Domains for 3uwn:
      1. 2784856Domain d3uwna1: 3uwn A:204-313 [250273]
        automated match to d1oz3a1
        complexed with unx, uwn
      2. 2784857Domain d3uwna2: 3uwn A:314-419 [250274]
        automated match to d1oz2a2
        complexed with unx, uwn
      3. 2784858Domain d3uwna3: 3uwn A:422-527 [250275]
        automated match to d1oz3a3
        complexed with unx, uwn
    16. Domain for 4a4f:
    17. Domain for 4a4h:
    18. Domains for 4fl6:
      1. 2784877Domain d4fl6a1: 4fl6 A:231-339 [252027]
        automated match to d1oz3a1
        complexed with unx, uwn
      2. 2784878Domain d4fl6a2: 4fl6 A:340-447 [252028]
        automated match to d1oz2a2
        complexed with unx, uwn
      3. 2784879Domain d4fl6a3: 4fl6 A:448-544 [252029]
        automated match to d1oz3a3
        complexed with unx, uwn
      4. 2784880Domain d4fl6b1: 4fl6 B:231-339 [252030]
        automated match to d1oz3a1
        complexed with unx, uwn
      5. 2784881Domain d4fl6b2: 4fl6 B:340-447 [252031]
        automated match to d1oz2a2
        complexed with unx, uwn
      6. 2784882Domain d4fl6b3: 4fl6 B:448-544 [252032]
        automated match to d1oz3a3
        complexed with unx, uwn
    19. Domain for 4fu6:
    20. Domains for 4l59:
      1. 2784874Domain d4l59a1: 4l59 A:232-339 [253522]
        automated match to d1oz3a1
        complexed with 1vz, so4, unx
      2. 2784875Domain d4l59a2: 4l59 A:340-447 [253523]
        automated match to d1oz2a2
        complexed with 1vz, so4, unx
      3. 2784876Domain d4l59a3: 4l59 A:448-544 [253524]
        automated match to d1oz3a3
        complexed with 1vz, so4, unx
    21. Domains for 4uc4:
      1. 2784892Domain d4uc4a1: 4uc4 A:918-975 [311642]
        automated match to d2qqra1
      2. 2784893Domain d4uc4a2: 4uc4 A:976-1026 [311643]
        automated match to d2qqra2
      3. 2784894Domain d4uc4b1: 4uc4 B:918-975 [311751]
        automated match to d2qqra1
      4. 2784895Domain d4uc4b2: 4uc4 B:976-1026 [311752]
        automated match to d2qqra2
    22. Domains for 6byb:
      1. 2784853Domain d6byba1: 6byb A:204-313 [349857]
        automated match to d1oz2a1
        complexed with ec7, edo, unx
      2. 2784854Domain d6byba2: 6byb A:314-421 [349858]
        automated match to d1oz2a3
        complexed with ec7, edo, unx
      3. 2784855Domain d6byba3: 6byb A:422-520 [349859]
        automated match to d1oz2a3
        complexed with ec7, edo, unx

More info for Protein automated matches from b.34.9.0: automated matches

Timeline for Protein automated matches from b.34.9.0: automated matches: