Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2547890Fold d.145: FAD-binding/transporter-associated domain-like [56175] (1 superfamily)
    consists of two alpha+beta subdomains
  4. 2547891Superfamily d.145.1: FAD-binding/transporter-associated domain-like [56176] (5 families) (S)
  5. 2548134Family d.145.1.0: automated matches [191624] (1 protein)
    not a true family
  6. 2548135Protein automated matches [191143] (11 species)
    not a true protein

Species:

  1. 2548136Brevibacterium sterolicum [TaxId:1702] [255227] (1 PDB entry)
  2. 2548138Listeria monocytogenes [TaxId:1639] [226225] (1 PDB entry)
  3. 2548140Maize (Zea mays) [TaxId:4577] [225479] (17 PDB entries)
    1. Domain for 2qkn:
    2. Domain for 2qpm:
    3. Domain for 3bw7:
    4. Domain for 3c0p:
    5. Domain for 3dq0:
    6. Domain for 3kjm:
    7. Domain for 3s1c:
    8. Domain for 3s1d:
    9. Domain for 3s1e:
    10. Domain for 3s1f:
    11. Domains for 4ml8:
      1. 2548159Domain d4ml8a1: 4ml8 A:29-234 [269679]
        Other proteins in same PDB: d4ml8a2, d4ml8b2, d4ml8c2, d4ml8d2
        automated match to d3s1da1
        complexed with fad, peg
      2. 2548160Domain d4ml8b1: 4ml8 B:29-234 [269675]
        Other proteins in same PDB: d4ml8a2, d4ml8b2, d4ml8c2, d4ml8d2
        automated match to d3s1da1
        complexed with fad, peg
      3. 2548161Domain d4ml8c1: 4ml8 C:29-234 [269677]
        Other proteins in same PDB: d4ml8a2, d4ml8b2, d4ml8c2, d4ml8d2
        automated match to d3s1da1
        complexed with fad, peg
      4. 2548162Domain d4ml8d1: 4ml8 D:29-234 [269670]
        Other proteins in same PDB: d4ml8a2, d4ml8b2, d4ml8c2, d4ml8d2
        automated match to d3s1da1
        complexed with fad, peg
    12. Domains for 4mla:
      1. 2548155Domain d4mlaa1: 4mla A:29-234 [269681]
        Other proteins in same PDB: d4mlaa2, d4mlab2
        automated match to d3s1da1
        complexed with edo, fad, gol, ipa
      2. 2548156Domain d4mlab1: 4mla B:29-234 [269669]
        Other proteins in same PDB: d4mlaa2, d4mlab2
        automated match to d3s1da1
        complexed with edo, fad, gol, ipa
    13. Domain for 4o95:
    14. Domains for 4oal:
      1. 2548148Domain d4oala1: 4oal A:40-246 [270983]
        Other proteins in same PDB: d4oala2, d4oalb2
        automated match to d1w1oa2
        complexed with 245, dms, fad
      2. 2548149Domain d4oalb1: 4oal B:40-246 [270985]
        Other proteins in same PDB: d4oala2, d4oalb2
        automated match to d1w1oa2
        complexed with 245, dms, fad
    15. Domain for 5hhz:
    16. Domain for 5hmr:
    17. Domain for 5hqx:
  4. 2548163Pseudomonas aeruginosa [TaxId:287] [189275] (1 PDB entry)
  5. 2548165Pseudomonas carboxydovorans [311167] (1 PDB entry)
  6. 2548168Rhodobacter capsulatus [TaxId:1061] [255637] (2 PDB entries)
    1. Domains for 2w3r:
      1. 2548173Domain d2w3ra3: 2w3r A:179-345 [238898]
        Other proteins in same PDB: d2w3ra1, d2w3ra2, d2w3ra4, d2w3rb1, d2w3rb2, d2w3rc1, d2w3rc2, d2w3rc4, d2w3rd1, d2w3rd2, d2w3re1, d2w3re2, d2w3re4, d2w3rf1, d2w3rf2, d2w3rg1, d2w3rg2, d2w3rg4, d2w3rh1, d2w3rh2
        automated match to d1jroa4
        complexed with ca, fad, fes, hpa, mom, mte
      2. 2548174Domain d2w3rc3: 2w3r C:179-345 [238902]
        Other proteins in same PDB: d2w3ra1, d2w3ra2, d2w3ra4, d2w3rb1, d2w3rb2, d2w3rc1, d2w3rc2, d2w3rc4, d2w3rd1, d2w3rd2, d2w3re1, d2w3re2, d2w3re4, d2w3rf1, d2w3rf2, d2w3rg1, d2w3rg2, d2w3rg4, d2w3rh1, d2w3rh2
        automated match to d1jroa4
        complexed with ca, fad, fes, hpa, mom, mte
      3. 2548175Domain d2w3re3: 2w3r E:179-345 [238906]
        Other proteins in same PDB: d2w3ra1, d2w3ra2, d2w3ra4, d2w3rb1, d2w3rb2, d2w3rc1, d2w3rc2, d2w3rc4, d2w3rd1, d2w3rd2, d2w3re1, d2w3re2, d2w3re4, d2w3rf1, d2w3rf2, d2w3rg1, d2w3rg2, d2w3rg4, d2w3rh1, d2w3rh2
        automated match to d1jroa4
        complexed with ca, fad, fes, hpa, mom, mte
      4. 2548176Domain d2w3rg3: 2w3r G:179-345 [238910]
        Other proteins in same PDB: d2w3ra1, d2w3ra2, d2w3ra4, d2w3rb1, d2w3rb2, d2w3rc1, d2w3rc2, d2w3rc4, d2w3rd1, d2w3rd2, d2w3re1, d2w3re2, d2w3re4, d2w3rf1, d2w3rf2, d2w3rg1, d2w3rg2, d2w3rg4, d2w3rh1, d2w3rh2
        automated match to d1jroa4
        complexed with ca, fad, fes, hpa, mom, mte
    2. Domains for 2w3s:
      1. 2548169Domain d2w3sa3: 2w3s A:179-345 [238914]
        Other proteins in same PDB: d2w3sa1, d2w3sa2, d2w3sa4, d2w3sb1, d2w3sb2, d2w3sc1, d2w3sc2, d2w3sc4, d2w3sd1, d2w3sd2, d2w3se1, d2w3se2, d2w3se4, d2w3sf1, d2w3sf2, d2w3sg1, d2w3sg2, d2w3sg4, d2w3sh1, d2w3sh2
        automated match to d1jroa4
        complexed with ca, fad, fes, mom, mte, xan
      2. 2548170Domain d2w3sc3: 2w3s C:179-345 [238918]
        Other proteins in same PDB: d2w3sa1, d2w3sa2, d2w3sa4, d2w3sb1, d2w3sb2, d2w3sc1, d2w3sc2, d2w3sc4, d2w3sd1, d2w3sd2, d2w3se1, d2w3se2, d2w3se4, d2w3sf1, d2w3sf2, d2w3sg1, d2w3sg2, d2w3sg4, d2w3sh1, d2w3sh2
        automated match to d1jroa4
        complexed with ca, fad, fes, mom, mte, xan
      3. 2548171Domain d2w3se3: 2w3s E:179-345 [238922]
        Other proteins in same PDB: d2w3sa1, d2w3sa2, d2w3sa4, d2w3sb1, d2w3sb2, d2w3sc1, d2w3sc2, d2w3sc4, d2w3sd1, d2w3sd2, d2w3se1, d2w3se2, d2w3se4, d2w3sf1, d2w3sf2, d2w3sg1, d2w3sg2, d2w3sg4, d2w3sh1, d2w3sh2
        automated match to d1jroa4
        complexed with ca, fad, fes, mom, mte, xan
      4. 2548172Domain d2w3sg3: 2w3s G:179-345 [238926]
        Other proteins in same PDB: d2w3sa1, d2w3sa2, d2w3sa4, d2w3sb1, d2w3sb2, d2w3sc1, d2w3sc2, d2w3sc4, d2w3sd1, d2w3sd2, d2w3se1, d2w3se2, d2w3se4, d2w3sf1, d2w3sf2, d2w3sg1, d2w3sg2, d2w3sg4, d2w3sh1, d2w3sh2
        automated match to d1jroa4
        complexed with ca, fad, fes, mom, mte, xan
  7. 2548177Rhodococcus jostii [TaxId:101510] [319925] (4 PDB entries)
    1. Domains for 5fxd:
      1. 2548178Domain d5fxda1: 5fxd A:2-238 [319988]
        Other proteins in same PDB: d5fxda2, d5fxdb2
        automated match to d1e0ya2
        complexed with fad, gol, h7y
      2. 2548179Domain d5fxdb1: 5fxd B:2-238 [319978]
        Other proteins in same PDB: d5fxda2, d5fxdb2
        automated match to d1e0ya2
        complexed with fad, gol, h7y
    2. Domains for 5fxe:
      1. 2548182Domain d5fxea1: 5fxe A:2-238 [319935]
        Other proteins in same PDB: d5fxea2, d5fxeb2
        automated match to d1e0ya2
        complexed with ciy, fad, gol
      2. 2548183Domain d5fxeb1: 5fxe B:2-238 [319926]
        Other proteins in same PDB: d5fxea2, d5fxeb2
        automated match to d1e0ya2
        complexed with ciy, fad, gol
    3. Domains for 5fxf:
      1. 2548180Domain d5fxfa1: 5fxf A:2-238 [320044]
        Other proteins in same PDB: d5fxfa2, d5fxfb2
        automated match to d1e0ya2
        complexed with bez, fad, gol
      2. 2548181Domain d5fxfb1: 5fxf B:2-238 [319994]
        Other proteins in same PDB: d5fxfa2, d5fxfb2
        automated match to d1e0ya2
        complexed with bez, fad, gol
    4. Domains for 5fxp:
      1. 2548184Domain d5fxpa1: 5fxp A:2-238 [320115]
        Other proteins in same PDB: d5fxpa2, d5fxpb2
        automated match to d1e0ya2
        complexed with fad, gol, v55
      2. 2548185Domain d5fxpb1: 5fxp B:2-238 [320028]
        Other proteins in same PDB: d5fxpa2, d5fxpb2
        automated match to d1e0ya2
        complexed with fad, gol, v55
  8. 2548186Sulfolobus tokodaii [TaxId:273063] [312395] (1 PDB entry)
  9. 2548188Thale cress (Arabidopsis thaliana) [TaxId:3702] [225037] (2 PDB entries)
    1. Domain for 2exr:
    2. Domain for 2q4w:
  10. 2548191Vibrio cholerae [TaxId:243277] [232563] (1 PDB entry)
  11. 3053619Linum usitatissimum [TaxId:4006] [353681] (1 PDB entry)

More info for Protein automated matches from d.145.1.0: automated matches

Timeline for Protein automated matches from d.145.1.0: automated matches: