SCOPe 2.05: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.05
Class a: All alpha proteins [46456] (286 folds)
Fold a.123: Nuclear receptor ligand-binding domain [48507] (1 superfamily)
multihelical; 3 layers or orthogonally packed helices
Superfamily a.123.1: Nuclear receptor ligand-binding domain [48508] (2 families)
Family a.123.1.0: automated matches [191623] (1 protein)
not a true family
Protein automated matches [191142] (5 species)
not a true protein

Species:

Crassostrea gigas [TaxId:29159] [226087] (1 PDB entry)
- Domains for 4n1y:
  1. Domain d4n1ya_: 4n1y A: [240559]
  2. Domain d4n1yb_: 4n1y B: [240560]
  3. Domain d4n1yc_: 4n1y C: [236808]
    automated match to d3ltxb_
  4. Domain d4n1yd_: 4n1y D: [236809]
    automated match to d3ltxb_
Fruit fly (Drosophila melanogaster) [TaxId:7227] [189702] (1 PDB entry)
- Domain for 2xhs:
  - Domain d2xhsa_: 2xhs A: [170097]
    automated match to d1pk5a_
Human (Homo sapiens) [TaxId:9606] [189274] (19 PDB entries)
1. Domains for 3b0w:
  1. Domain d3b0wa_: 3b0w A: [199003]
    automated match to d3b0wb_
    complexed with dgx
  2. Domain d3b0wb_: 3b0w B: [193702]
    automated match to d3l0la_
    complexed with dgx
2. Domain for 3cjw:
  - Domain d3cjwa_: 3cjw A: [208885]
    automated match to d3d24a1
3. Domain for 3l0j:
  - Domain d3l0ja_: 3l0j A: [212638]
    automated match to d3l0la_
    protein/DNA complex; complexed with hc9
4. Domains for 3l0l:
  1. Domain d3l0la_: 3l0l A: [179842]
    automated match to d1n83a_
    protein/DNA complex; complexed with hc3
  2. Domain d3l0lb_: 3l0l B: [179843]
    automated match to d1n83a_
    protein/DNA complex; complexed with hc3
5. Domain for 3tx7:
  - Domain d3tx7b_: 3tx7 B: [239838]
    Other proteins in same PDB: d3tx7a_
    automated match to d2xhsa_
    complexed with p6l
6. Domain for 4j5w:
  - Domain d4j5wc1: 4j5w C:227-457 [223559]
    Other proteins in same PDB: d4j5wd_
    automated match to d1r1ka_
    complexed with mg
7. Domains for 4nb6:
  1. Domain d4nb6a_: 4nb6 A: [229950]
    automated match to d4nb6b_
    complexed with 444
  2. Domain d4nb6b_: 4nb6 B: [229343]
    automated match to d3l0la_
    complexed with 444
8. Domains for 4qm0:
  1. Domain d4qm0a_: 4qm0 A: [259707]
    automated match to d3l0la_
    complexed with 39k, dms
  2. Domain d4qm0c_: 4qm0 C: [263764]
    automated match to d3l0la_
    complexed with 39k, dms
9. Domains for 4wqp:
  1. Domain d4wqpa_: 4wqp A: [269087]
    automated match to d1n83a_
    complexed with 3sx, so4
  2. Domain d4wqpb_: 4wqp B: [269088]
    automated match to d1n83a_
    complexed with 3sx, so4
10. Domain for 4ymq:
  - Domain d4ymqa_: 4ymq A: [271826]
    automated match to d1xdkb_
    complexed with gol, na, zbd
11. Domain for 4ypq:
  - Domain d4ypqa_: 4ypq A: [280108]
    automated match to d3l0la_
    complexed with 4f1, mg
12. Domains for 4zjr:
  1. Domain d4zjra_: 4zjr A: [274101]
    automated match to d4nb6b_
    complexed with 4p3
  2. Domain d4zjrb_: 4zjr B: [274107]
    automated match to d4nb6b_
    complexed with 4p3
  3. Domain d4zjrc_: 4zjr C: [274103]
    automated match to d4nb6b_
    complexed with 4p3
  4. Domain d4zjrd_: 4zjr D: [274104]
    automated match to d4nb6b_
    complexed with 4p3
13. Domains for 4zjw:
  1. Domain d4zjwa_: 4zjw A: [274099]
    automated match to d4nb6b_
    complexed with 4p1
  2. Domain d4zjwb_: 4zjw B: [274106]
    automated match to d4nb6b_
    complexed with 4p1
14. Domains for 4zom:
  1. Domain d4zoma_: 4zom A: [274110]
    automated match to d4nb6b_
    complexed with 4q3
  2. Domain d4zomb_: 4zom B: [274109]
    automated match to d4nb6b_
    complexed with 4q3
  3. Domain d4zomc_: 4zom C: [274112]
    automated match to d4nb6b_
    complexed with 4q3
  4. Domain d4zomd_: 4zom D: [274111]
    automated match to d4nb6b_
    complexed with 4q3
15. Domains for 5ak2:
  1. Domain d5ak2a_: 5ak2 A: [271607]
    automated match to d2pjla_
    complexed with 85z
  2. Domain d5ak2b_: 5ak2 B: [271608]
    automated match to d2pjla_
    complexed with 85z
16. Domain for 5c4o:
  - Domain d5c4oa_: 5c4o A: [279885]
    automated match to d3l0ja_
    complexed with 4f1, gol, so4
17. Domain for 5c4s:
  - Domain d5c4sa_: 5c4s A: [279887]
    automated match to d3l0ja_
    complexed with 4y5, gol
18. Domain for 5c4t:
  - Domain d5c4ta_: 5c4t A: [279886]
    automated match to d3l0ja_
    complexed with 4y6, gol, so4
19. Domain for 5c4u:
  - Domain d5c4ua_: 5c4u A: [279888]
    automated match to d3l0ja_
    complexed with 4y7, gol
Mouse (Mus musculus) [TaxId:10090] [255824] (1 PDB entry)
- Domain for 3f5c:
  - Domain d3f5ca_: 3f5c A: [246026]
    automated match to d2xhsa_
    protein/DNA complex
Tunicate (Polyandrocarpa misakiensis) [TaxId:7723] [225459] (1 PDB entry)
- Domains for 2q60:
  1. Domain d2q60a_: 2q60 A: [205753]
    automated match to d2xhsa_
  2. Domain d2q60b_: 2q60 B: [205754]
    automated match to d2xhsa_
  3. Domain d2q60c_: 2q60 C: [205755]
    automated match to d2xhsa_
  4. Domain d2q60d_: 2q60 D: [205756]
    automated match to d2xhsa_

More info for Protein automated matches from a.123.1.0: automated matches

Timeline for Protein automated matches from a.123.1.0: automated matches:

Protein automated matches from a.123.1.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from a.123.1.0: automated matches appears in SCOPe 2.04
Protein automated matches from a.123.1.0: automated matches appears in SCOPe 2.06
Protein automated matches from a.123.1.0: automated matches appears in the current release, SCOPe 2.08