Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class a: All alpha proteins [46456] (290 folds)
  3. Fold a.123: Nuclear receptor ligand-binding domain [48507] (1 superfamily)
    multihelical; 3 layers or orthogonally packed helices
  4. Superfamily a.123.1: Nuclear receptor ligand-binding domain [48508] (2 families) (S)
  5. Family a.123.1.0: automated matches [191623] (1 protein)
    not a true family
  6. Protein automated matches [191142] (5 species)
    not a true protein

Species:

  1. Crassostrea gigas [TaxId:29159] [226087] (2 PDB entries)
    1. Domains for 3ltx:
      1. Domain d3ltxa_: 3ltx A: [305866]
        automated match to d4n1yb_
      2. Domain d3ltxb_: 3ltx B: [305867]
        automated match to d4n1yb_
      3. Domain d3ltxc_: 3ltx C: [305868]
        automated match to d4n1yb_
      4. Domain d3ltxd_: 3ltx D: [305869]
        automated match to d4n1yb_
    2. Domains for 4n1y:
      1. Domain d4n1ya_: 4n1y A: [240559]
      2. Domain d4n1yb_: 4n1y B: [240560]
      3. Domain d4n1yc_: 4n1y C: [236808]
        automated match to d3ltxb_
      4. Domain d4n1yd_: 4n1y D: [236809]
        automated match to d3ltxb_
  2. Fruit fly (Drosophila melanogaster) [TaxId:7227] [189702] (2 PDB entries)
    1. Domain for 2iz2:
    2. Domain for 2xhs:
  3. Human (Homo sapiens) [TaxId:9606] [189274] (121 PDB entries)
    1. Domains for 3b0w:
      1. Domain d3b0wa_: 3b0w A: [199003]
        automated match to d3b0wb_
        complexed with dgx
      2. Domain d3b0wb_: 3b0w B: [193702]
        automated match to d3l0la_
        complexed with dgx
    2. Domain for 3cjw:
    3. Domain for 3l0j:
    4. Domains for 3l0l:
      1. Domain d3l0la_: 3l0l A: [179842]
        automated match to d1n83a_
        protein/DNA complex; complexed with hc3
      2. Domain d3l0lb_: 3l0l B: [179843]
        automated match to d1n83a_
        protein/DNA complex; complexed with hc3
    5. Domain for 3tx7:
    6. Domain for 4j5w:
    7. Domains for 4nb6:
      1. Domain d4nb6a_: 4nb6 A: [229950]
        automated match to d4nb6b_
        complexed with 444
      2. Domain d4nb6b_: 4nb6 B: [229343]
        automated match to d3l0la_
        complexed with 444
    8. Domains for 4qm0:
      1. Domain d4qm0a_: 4qm0 A: [259707]
        Other proteins in same PDB: d4qm0c2
        automated match to d3l0la_
        complexed with 39k, dms
      2. Domain d4qm0c1: 4qm0 C:265-507 [263764]
        Other proteins in same PDB: d4qm0c2
        automated match to d3l0la_
        complexed with 39k, dms
    9. Domain for 4udb:
    10. Domains for 4wqp:
      1. Domain d4wqpa_: 4wqp A: [269087]
        automated match to d1n83a_
        complexed with 3sx, so4
      2. Domain d4wqpb_: 4wqp B: [269088]
        automated match to d1n83a_
        complexed with 3sx, so4
    11. Domain for 4ymq:
    12. Domain for 4ypq:
    13. Domains for 4zjr:
      1. Domain d4zjra_: 4zjr A: [274101]
        Other proteins in same PDB: d4zjrc2, d4zjrd2
        automated match to d4nb6b_
        complexed with 4p3
      2. Domain d4zjrb_: 4zjr B: [274107]
        Other proteins in same PDB: d4zjrc2, d4zjrd2
        automated match to d4nb6b_
        complexed with 4p3
      3. Domain d4zjrc1: 4zjr C:265-483 [274103]
        Other proteins in same PDB: d4zjrc2, d4zjrd2
        automated match to d4nb6b_
        complexed with 4p3
      4. Domain d4zjrd1: 4zjr D:1-481 [274104]
        Other proteins in same PDB: d4zjrc2, d4zjrd2
        automated match to d4nb6b_
        complexed with 4p3
    14. Domains for 4zjw:
      1. Domain d4zjwa_: 4zjw A: [274099]
        automated match to d4nb6b_
        complexed with 4p1
      2. Domain d4zjwb_: 4zjw B: [274106]
        automated match to d4nb6b_
        complexed with 4p1
    15. Domains for 4zom:
      1. Domain d4zoma_: 4zom A: [274110]
        automated match to d4nb6b_
        complexed with 4q3
      2. Domain d4zomb_: 4zom B: [274109]
        automated match to d4nb6b_
        complexed with 4q3
      3. Domain d4zomc_: 4zom C: [274112]
        automated match to d4nb6b_
        complexed with 4q3
      4. Domain d4zomd_: 4zom D: [274111]
        automated match to d4nb6b_
        complexed with 4q3
    16. Domains for 5ak2:
      1. Domain d5ak2a1: 5ak2 A:307-552 [271607]
        Other proteins in same PDB: d5ak2a2
        automated match to d2pjla_
        complexed with 85z
      2. Domain d5ak2b_: 5ak2 B: [271608]
        Other proteins in same PDB: d5ak2a2
        automated match to d2pjla_
        complexed with 85z
    17. Domain for 5aph:
    18. Domain for 5apj:
    19. Domains for 5apk:
      1. Domain d5apka1: 5apk A:265-486 [310192]
        Other proteins in same PDB: d5apka2
        automated match to d1n83a_
        complexed with 76e
      2. Domain d5apkb_: 5apk B: [310194]
        Other proteins in same PDB: d5apka2
        automated match to d1n83a_
        complexed with 76e
    20. Domains for 5ayg:
      1. Domain d5ayga_: 5ayg A: [312590]
        automated match to d3l0la_
        protein/DNA complex; complexed with 4lq
      2. Domain d5aygb_: 5ayg B: [312545]
        automated match to d3l0la_
        protein/DNA complex; complexed with 4lq
    21. Domain for 5c4o:
    22. Domain for 5c4s:
    23. Domain for 5c4t:
    24. Domain for 5c4u:
    25. Domains for 5eth:
      1. Domain d5etha_: 5eth A: [316408]
        automated match to d4zoma_
        complexed with 5rt
      2. Domain d5ethb_: 5eth B: [316648]
        automated match to d4zoma_
        complexed with 5rt
    26. Domain for 5g42:
    27. Domain for 5g43:
    28. Domain for 5g44:
    29. Domain for 5g45:
    30. Domain for 5g46:
    31. Domains for 5ixk:
      1. Domain d5ixka_: 5ixk A: [318496]
        automated match to d4zoma_
        complexed with 6ew
      2. Domain d5ixkb_: 5ixk B: [318505]
        automated match to d4zoma_
        complexed with 6ew
    32. Domains for 5k38:
      1. Domain d5k38a_: 5k38 A: [334863]
        automated match to d3l0la_
      2. Domain d5k38b_: 5k38 B: [334826]
        automated match to d3l0la_
    33. Domains for 5k3l:
      1. Domain d5k3la_: 5k3l A: [334831]
        automated match to d3l0la_
        complexed with 444
      2. Domain d5k3lb_: 5k3l B: [334850]
        automated match to d3l0la_
        complexed with 444
      3. Domain d5k3lc_: 5k3l C: [334931]
        automated match to d3l0la_
        complexed with 444
      4. Domain d5k3ld_: 5k3l D: [334823]
        automated match to d3l0la_
        complexed with 444
    34. Domains for 5k3m:
      1. Domain d5k3ma_: 5k3m A: [334824]
        automated match to d3l0la_
        complexed with 6q5
      2. Domain d5k3mb_: 5k3m B: [334829]
        automated match to d3l0la_
        complexed with 6q5
    35. Domains for 5k3n:
      1. Domain d5k3na_: 5k3n A: [334971]
        automated match to d3l0la_
        complexed with 6q6
      2. Domain d5k3nb_: 5k3n B: [334996]
        automated match to d3l0la_
        complexed with 6q6
      3. Domain d5k3nc_: 5k3n C: [334987]
        automated match to d3l0la_
        complexed with 6q6
      4. Domain d5k3nd_: 5k3n D: [334825]
        automated match to d3l0la_
        complexed with 6q6
    36. Domains for 5k6e:
      1. Domain d5k6ea_: 5k6e A: [335022]
        automated match to d3l0la_
        complexed with 6qp
      2. Domain d5k6eb_: 5k6e B: [334933]
        automated match to d3l0la_
        complexed with 6qp
    37. Domains for 5k74:
      1. Domain d5k74a_: 5k74 A: [334866]
        automated match to d3l0la_
        complexed with 6qw
      2. Domain d5k74b_: 5k74 B: [334834]
        automated match to d3l0la_
        complexed with 6qw
    38. Domain for 5lwp:
    39. Domains for 5m96:
      1. Domain d5m96a_: 5m96 A: [327236]
        automated match to d4wqpa_
        complexed with q6y
      2. Domain d5m96b_: 5m96 B: [327225]
        automated match to d4wqpa_
        complexed with q6y
    40. Domain for 5ni5:
    41. Domain for 5ni7:
    42. Domain for 5ni8:
    43. Domain for 5nib:
    44. Domains for 5nti:
      1. Domain d5ntia_: 5nti A: [335711]
        automated match to d3l0la_
        complexed with c3s
      2. Domain d5ntib_: 5nti B: [335676]
        automated match to d3l0la_
        complexed with c3s
      3. Domain d5ntic_: 5nti C: [335757]
        automated match to d3l0la_
        complexed with c3s
      4. Domain d5ntid_: 5nti D: [335696]
        automated match to d3l0la_
        complexed with c3s
    45. Domains for 5ntk:
      1. Domain d5ntka_: 5ntk A: [335759]
        automated match to d4wqpa_
        complexed with 99n
      2. Domain d5ntkb_: 5ntk B: [335841]
        automated match to d4wqpa_
        complexed with 99n
    46. Domains for 5ntn:
      1. Domain d5ntna_: 5ntn A: [335737]
        automated match to d3l0la_
        complexed with 98h
      2. Domain d5ntnb_: 5ntn B: [335718]
        automated match to d3l0la_
        complexed with 98h
      3. Domain d5ntnc_: 5ntn C: [335846]
        automated match to d3l0la_
        complexed with 98h
      4. Domain d5ntnd_: 5ntn D: [335746]
        automated match to d3l0la_
        complexed with 98h
    47. Domain for 5ntp:
    48. Domains for 5ntq:
      1. Domain d5ntqa_: 5ntq A: [335716]
        automated match to d3l0la_
        complexed with 444
      2. Domain d5ntqb_: 5ntq B: [335796]
        automated match to d3l0la_
        complexed with 444
    49. Domains for 5ntw:
      1. Domain d5ntwa_: 5ntw A: [335687]
        automated match to d3l0la_
        complexed with 98n
      2. Domain d5ntwb_: 5ntw B: [335692]
        automated match to d3l0la_
        complexed with 98n
      3. Domain d5ntwc_: 5ntw C: [335703]
        automated match to d3l0la_
        complexed with 98n
      4. Domain d5ntwd_: 5ntw D: [335726]
        automated match to d3l0la_
        complexed with 98n
    50. Domains for 5nu1:
      1. Domain d5nu1a_: 5nu1 A: [335775]
        automated match to d3l0la_
        complexed with 8yb
      2. Domain d5nu1b_: 5nu1 B: [335743]
        automated match to d3l0la_
        complexed with 8yb
    51. Domain for 5ufo:
    52. Domains for 5ufr:
      1. Domain d5ufra_: 5ufr A: [332801]
        automated match to d3l0la_
        complexed with 88j
      2. Domain d5ufrb_: 5ufr B: [332793]
        automated match to d3l0la_
        complexed with 88j
    53. Domain for 5vb3:
    54. Domain for 5vb5:
    55. Domain for 5vb6:
    56. Domain for 5vb7:
    57. Domain for 5vqk:
    58. Domain for 5vql:
    59. Domains for 5w4r:
      1. Domain d5w4ra_: 5w4r A: [348026]
        automated match to d5ufra_
        complexed with 9wd
      2. Domain d5w4rb_: 5w4r B: [347987]
        automated match to d5ufra_
        complexed with 9wd
    60. Domains for 5w4v:
      1. Domain d5w4va_: 5w4v A: [347994]
        automated match to d5aygb_
        complexed with 9wa
      2. Domain d5w4vb_: 5w4v B: [348102]
        automated match to d5aygb_
        complexed with 9wa
      3. Domain d5w4vc_: 5w4v C: [348273]
        automated match to d5aygb_
        complexed with 9wa
      4. Domain d5w4vd_: 5w4v D: [348110]
        automated match to d5aygb_
        complexed with 9wa
      5. Domain d5w4ve_: 5w4v E: [347958]
        automated match to d5aygb_
        complexed with 9wa
      6. Domain d5w4vf_: 5w4v F: [347983]
        automated match to d5aygb_
        complexed with 9wa
    61. Domains for 5x8q:
      1. Domain d5x8qa_: 5x8q A: [335273]
        automated match to d3l0la_
        complexed with 82r; mutant
      2. Domain d5x8qc_: 5x8q C: [335267]
        automated match to d3l0la_
        complexed with 82r; mutant
      3. Domain d5x8qe_: 5x8q E: [335308]
        automated match to d3l0la_
        complexed with 82r; mutant
      4. Domain d5x8qg_: 5x8q G: [335284]
        automated match to d3l0la_
        complexed with 82r; mutant
    62. Domains for 5x8s:
      1. Domain d5x8sa_: 5x8s A: [335299]
        automated match to d3l0la_
        complexed with 6q5; mutant
      2. Domain d5x8sb_: 5x8s B: [335265]
        automated match to d3l0la_
        complexed with 6q5; mutant
    63. Domain for 5x8u:
    64. Domain for 5x8w:
    65. Domains for 5x8x:
      1. Domain d5x8xa_: 5x8x A: [335246]
        automated match to d3l0la_
        complexed with 82o; mutant
      2. Domain d5x8xc_: 5x8x C: [335283]
        automated match to d3l0la_
        complexed with 82o; mutant
      3. Domain d5x8xe_: 5x8x E: [335291]
        automated match to d3l0la_
        complexed with 82o; mutant
      4. Domain d5x8xg_: 5x8x G: [335259]
        automated match to d3l0la_
        complexed with 82o; mutant
    66. Domains for 5za1:
      1. Domain d5za1a_: 5za1 A: [359654]
        Other proteins in same PDB: d5za1b2
        automated match to d5x8sb_
        complexed with 9a0, dmf, edo
      2. Domain d5za1b1: 5za1 B:265-487 [359652]
        Other proteins in same PDB: d5za1b2
        automated match to d5x8sb_
        complexed with 9a0, dmf, edo
    67. Domains for 6a22:
      1. Domain d6a22a_: 6a22 A: [361006]
        automated match to d3l0la_
        complexed with 9p6
      2. Domain d6a22c_: 6a22 C: [361110]
        automated match to d3l0la_
        complexed with 9p6
      3. Domain d6a22e_: 6a22 E: [361005]
        automated match to d3l0la_
        complexed with 9p6
      4. Domain d6a22g_: 6a22 G: [361040]
        automated match to d3l0la_
        complexed with 9p6
    68. Domains for 6b30:
      1. Domain d6b30a_: 6b30 A: [349380]
        automated match to d5ufra_
        complexed with cfg
      2. Domain d6b30b_: 6b30 B: [349561]
        automated match to d5ufra_
        complexed with cfg
    69. Domains for 6b31:
      1. Domain d6b31a_: 6b31 A: [355549]
        automated match to d4qm0a_
        complexed with cfj
      2. Domain d6b31b_: 6b31 B: [355430]
        automated match to d4qm0a_
        complexed with cfj
    70. Domains for 6b33:
      1. Domain d6b33a_: 6b33 A: [360392]
        automated match to d4zjrb_
        complexed with cf7
      2. Domain d6b33b_: 6b33 B: [360355]
        automated match to d4zjrb_
        complexed with cf7
    71. Domains for 6bn6:
      1. Domain d6bn6a_: 6bn6 A: [342991]
        Other proteins in same PDB: d6bn6b2
        automated match to d3l0la_
        complexed with so4, xgh
      2. Domain d6bn6b1: 6bn6 B:265-486 [342975]
        Other proteins in same PDB: d6bn6b2
        automated match to d3l0la_
        complexed with so4, xgh
    72. Domains for 6br2:
      1. Domain d6br2a_: 6br2 A: [349811]
        automated match to d5ufra_
        complexed with e3s, mpd
      2. Domain d6br2b_: 6br2 B: [349773]
        automated match to d5ufra_
        complexed with e3s, mpd
    73. Domains for 6br3:
      1. Domain d6br3a_: 6br3 A: [349946]
        automated match to d5ufra_
        complexed with e3v, mpd
      2. Domain d6br3b_: 6br3 B: [349855]
        automated match to d5ufra_
        complexed with e3v, mpd
    74. Domains for 6cn5:
      1. Domain d6cn5a_: 6cn5 A: [356999]
        automated match to d3l0lb_
        complexed with f7m
      2. Domain d6cn5b_: 6cn5 B: [356995]
        automated match to d3l0lb_
        complexed with f7m
    75. Domain for 6cn6:
    76. Domains for 6e3e:
      1. Domain d6e3ea_: 6e3e A: [369849]
        automated match to d5ufra_
        complexed with hq7, mpd, so4
      2. Domain d6e3eb_: 6e3e B: [369774]
        automated match to d5ufra_
        complexed with hq7, mpd, so4
    77. Domains for 6e3g:
      1. Domain d6e3ga_: 6e3g A: [369839]
        automated match to d3l0la_
        complexed with edo, hoj
      2. Domain d6e3gb_: 6e3g B: [369785]
        automated match to d3l0la_
        complexed with edo, hoj
    78. Domain for 6esn:
    79. Domains for 6eu9:
      1. Domain d6eu9a_: 6eu9 A: [350364]
        automated match to d4dm6b_
        complexed with rea
      2. Domain d6eu9b_: 6eu9 B: [350356]
        automated match to d4dm6b_
        complexed with rea
      3. Domain d6eu9c_: 6eu9 C: [350486]
        automated match to d4dm6b_
        complexed with rea
      4. Domain d6eu9d_: 6eu9 D: [350397]
        automated match to d4dm6b_
        complexed with rea
    80. Domains for 6fgq:
      1. Domain d6fgqa1: 6fgq A:265-493 [356660]
        Other proteins in same PDB: d6fgqa2
        automated match to d3l0la_
        complexed with d9n
      2. Domain d6fgqb_: 6fgq B: [356504]
        Other proteins in same PDB: d6fgqa2
        automated match to d3l0la_
        complexed with d9n
    81. Domains for 6fzu:
      1. Domain d6fzua_: 6fzu A: [354965]
        automated match to d3l0la_
        complexed with ee8
      2. Domain d6fzub_: 6fzu B: [354973]
        automated match to d3l0la_
        complexed with ee8
    82. Domains for 6g05:
      1. Domain d6g05a_: 6g05 A: [354945]
        automated match to d3l0la_
        complexed with ef5
      2. Domain d6g05b_: 6g05 B: [354949]
        automated match to d3l0la_
        complexed with ef5
    83. Domains for 6g07:
      1. Domain d6g07a_: 6g07 A: [354956]
        automated match to d3l0la_
        complexed with eez
      2. Domain d6g07b_: 6g07 B: [354943]
        automated match to d3l0la_
        complexed with eez
      3. Domain d6g07c_: 6g07 C: [354966]
        automated match to d3l0la_
        complexed with eez
      4. Domain d6g07d_: 6g07 D: [354922]
        automated match to d3l0la_
        complexed with eez
    84. Domains for 6ivx:
      1. Domain d6ivxa_: 6ivx A: [365642]
        automated match to d3l0la_
        complexed with ayo
      2. Domain d6ivxc_: 6ivx C: [365625]
        automated match to d3l0la_
        complexed with ayo
      3. Domain d6ivxe_: 6ivx E: [365633]
        automated match to d3l0la_
        complexed with ayo
      4. Domain d6ivxg_: 6ivx G: [365623]
        automated match to d3l0la_
        complexed with ayo
    85. Domains for 6j1l:
      1. Domain d6j1la_: 6j1l A: [368420]
        automated match to d3l0la_
        complexed with b6l
      2. Domain d6j1lb_: 6j1l B: [368423]
        automated match to d3l0la_
        complexed with b6l
      3. Domain d6j1lc_: 6j1l C: [368419]
        automated match to d3l0la_
        complexed with b6l
    86. Domains for 6nad:
      1. Domain d6nada_: 6nad A: [368637]
        automated match to d5x8ua_
        complexed with khy
      2. Domain d6nadb_: 6nad B: [368622]
        automated match to d5x8ua_
        complexed with khy
    87. Domain for 6nws:
    88. Domains for 6nwt:
      1. Domain d6nwta_: 6nwt A: [370959]
        Other proteins in same PDB: d6nwtc2
        automated match to d5x8ua_
        complexed with l7p
      2. Domain d6nwtc1: 6nwt C:265-507 [370909]
        Other proteins in same PDB: d6nwtc2
        automated match to d5x8ua_
        complexed with l7p
    89. Domain for 6o3z:
    90. Domains for 6o98:
      1. Domain d6o98a_: 6o98 A: [366695]
        Other proteins in same PDB: d6o98b2
        automated match to d5ntwa_
        complexed with l8a
      2. Domain d6o98b1: 6o98 B:244-465 [366633]
        Other proteins in same PDB: d6o98b2
        automated match to d5ntwa_
        complexed with l8a
    91. Domains for 6q2w:
      1. Domain d6q2wa_: 6q2w A: [369452]
        automated match to d5x8sb_
        complexed with hbw
      2. Domain d6q2wb_: 6q2w B: [369441]
        automated match to d5x8sb_
        complexed with hbw
    92. Domain for 6q6m:
    93. Domain for 6q6o:
    94. Domain for 6q7a:
    95. Domain for 6q7h:
    96. Domain for 6r7a:
    97. Domain for 6r7j:
    98. Domain for 6r7k:
    99. Domain for 6sal:
    100. Domains for 6slz:
      1. Domain d6slza_: 6slz A: [391545]
        automated match to d5x8ua_
        complexed with lk8
      2. Domain d6slzb_: 6slz B: [391570]
        automated match to d5x8ua_
        complexed with lk8
    101. Domain for 6t4g:
    102. Domain for 6t4i:
    103. Domain for 6t4j:
    104. Domain for 6t4k:
    105. Domain for 6t4t:
    106. Domain for 6t4u:
    107. Domain for 6t4w:
    108. Domain for 6t4x:
    109. Domain for 6t4y:
    110. Domain for 6t50:
    111. Domain for 6tlm:
    112. Domain for 6tlq:
    113. Domain for 6tlt:
    114. Domain for 6ucg:
    115. Domains for 6xfv:
      1. Domain d6xfva_: 6xfv A: [393292]
        automated match to d5ntwa_
        complexed with v27
      2. Domain d6xfvb_: 6xfv B: [393303]
        automated match to d5ntwa_
        complexed with v27
    116. Domain for 7jh2:
    117. Domain for 7jtw:
    118. Domain for 7nec:
    119. Domain for 7np5:
    120. Domain for 7np6:
    121. Domain for 7npc:
  4. Mouse (Mus musculus) [TaxId:10090] [255824] (1 PDB entry)
  5. Tunicate (Polyandrocarpa misakiensis) [TaxId:7723] [225459] (1 PDB entry)

More info for Protein automated matches from a.123.1.0: automated matches

Timeline for Protein automated matches from a.123.1.0: automated matches: