Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2685877Class a: All alpha proteins [46456] (290 folds)
  3. 2716878Fold a.62: Hepatitis B viral capsid (hbcag) [47851] (1 superfamily)
    5 helices; array; two long helices form a hairpin that dimerizes into a 4-helical bundle
  4. 2716879Superfamily a.62.1: Hepatitis B viral capsid (hbcag) [47852] (2 families) (S)
    automatically mapped to Pfam PF00906
  5. 2716880Family a.62.1.1: Hepatitis B viral capsid (hbcag) [47853] (2 proteins)
  6. 2716887Protein automated matches [191131] (3 species)
    not a true protein

Species:

  1. 2716888Hepatitis b virus ayw/france/tiollais/1979 [TaxId:490133] [361673] (1 PDB entry)
  2. 2716893Hepatitis B virus genotype d subtype adw [TaxId:10419] [189224] (4 PDB entries)
    1. Domains for 3kxs:
      1. 2716894Domain d3kxsa_: 3kxs A: [179796]
        automated match to d1qgtb_
        mutant
      2. 2716895Domain d3kxsb_: 3kxs B: [179797]
        automated match to d1qgtb_
        mutant
      3. 2716896Domain d3kxsc_: 3kxs C: [179798]
        automated match to d1qgtb_
        mutant
      4. 2716897Domain d3kxsd_: 3kxs D: [179799]
        automated match to d1qgtb_
        mutant
      5. 2716898Domain d3kxse_: 3kxs E: [179800]
        automated match to d1qgtb_
        mutant
      6. 2716899Domain d3kxsf_: 3kxs F: [179801]
        automated match to d1qgtb_
        mutant
    2. Domains for 5e0i:
      1. 2716900Domain d5e0ia1: 5e0i A:1-148 [279813]
        Other proteins in same PDB: d5e0ia2, d5e0ia3, d5e0ib2, d5e0ib3, d5e0ic2, d5e0ic3, d5e0id2, d5e0ie2, d5e0ie3, d5e0if2, d5e0if3
        automated match to d4bmga_
        complexed with 5j6; mutant
      2. 2716901Domain d5e0ib1: 5e0i B:1-148 [279811]
        Other proteins in same PDB: d5e0ia2, d5e0ia3, d5e0ib2, d5e0ib3, d5e0ic2, d5e0ic3, d5e0id2, d5e0ie2, d5e0ie3, d5e0if2, d5e0if3
        automated match to d4bmga_
        complexed with 5j6; mutant
      3. 2716902Domain d5e0ic1: 5e0i C:1-148 [279812]
        Other proteins in same PDB: d5e0ia2, d5e0ia3, d5e0ib2, d5e0ib3, d5e0ic2, d5e0ic3, d5e0id2, d5e0ie2, d5e0ie3, d5e0if2, d5e0if3
        automated match to d4bmga_
        complexed with 5j6; mutant
      4. 2716903Domain d5e0id1: 5e0i D:1-148 [279816]
        Other proteins in same PDB: d5e0ia2, d5e0ia3, d5e0ib2, d5e0ib3, d5e0ic2, d5e0ic3, d5e0id2, d5e0ie2, d5e0ie3, d5e0if2, d5e0if3
        automated match to d4bmga_
        complexed with 5j6; mutant
      5. 2716904Domain d5e0ie1: 5e0i E:1-148 [279817]
        Other proteins in same PDB: d5e0ia2, d5e0ia3, d5e0ib2, d5e0ib3, d5e0ic2, d5e0ic3, d5e0id2, d5e0ie2, d5e0ie3, d5e0if2, d5e0if3
        automated match to d4bmga_
        complexed with 5j6; mutant
      6. 2716905Domain d5e0if1: 5e0i F:1-148 [279814]
        Other proteins in same PDB: d5e0ia2, d5e0ia3, d5e0ib2, d5e0ib3, d5e0ic2, d5e0ic3, d5e0id2, d5e0ie2, d5e0ie3, d5e0if2, d5e0if3
        automated match to d4bmga_
        complexed with 5j6; mutant
    3. Domains for 6cwt:
      1. 2716912Domain d6cwte_: 6cwt E: [356718]
        Other proteins in same PDB: d6cwta_, d6cwtb1, d6cwtb2, d6cwtc_, d6cwtd1, d6cwtd2
        automated match to d4bmga_
      2. 2716913Domain d6cwtf_: 6cwt F: [356808]
        Other proteins in same PDB: d6cwta_, d6cwtb1, d6cwtb2, d6cwtc_, d6cwtd1, d6cwtd2
        automated match to d4bmga_
    4. Domains for 6j10:
      1. 2716906Domain d6j10a_: 6j10 A: [367817]
        automated match to d4bmga_
        complexed with b4o
      2. 2716907Domain d6j10b_: 6j10 B: [367813]
        automated match to d4bmga_
        complexed with b4o
      3. 2716908Domain d6j10c_: 6j10 C: [367889]
        automated match to d4bmga_
        complexed with b4o
      4. 2716909Domain d6j10d_: 6j10 D: [367833]
        automated match to d4bmga_
        complexed with b4o
      5. 2716910Domain d6j10e_: 6j10 E: [367816]
        automated match to d4bmga_
        complexed with b4o
      6. 2716911Domain d6j10f_: 6j10 F: [367826]
        automated match to d4bmga_
        complexed with b4o
  3. 2716914Hepatitis B virus [TaxId:10407] [256206] (9 PDB entries)
    1. Domains for 4bmg:
      1. 2716949Domain d4bmga_: 4bmg A: [251276]
        automated match to d3kxse_
      2. 2716950Domain d4bmgb_: 4bmg B: [251277]
        automated match to d3kxse_
      3. 2716951Domain d4bmgc_: 4bmg C: [251278]
        automated match to d3kxse_
      4. 2716952Domain d4bmgd_: 4bmg D: [251279]
        automated match to d3kxse_
      5. 2716953Domain d4bmge_: 4bmg E: [251280]
        automated match to d3kxse_
      6. 2716954Domain d4bmgf_: 4bmg F: [251281]
        automated match to d3kxse_
    2. Domains for 5gmz:
      1. 2716921Domain d5gmza_: 5gmz A: [320998]
        Other proteins in same PDB: d5gmzb2, d5gmzd2, d5gmzf2
        automated match to d4bmga_
        complexed with 6xu, cl, gol, ipa; mutant
      2. 2716922Domain d5gmzb1: 5gmz B:1-142 [410110]
        Other proteins in same PDB: d5gmzb2, d5gmzd2, d5gmzf2
        automated match to d6htxb_
        complexed with 6xu, cl, gol, ipa; mutant
      3. 2716923Domain d5gmzc_: 5gmz C: [321009]
        Other proteins in same PDB: d5gmzb2, d5gmzd2, d5gmzf2
        automated match to d4bmga_
        complexed with 6xu, cl, gol, ipa; mutant
      4. 2716924Domain d5gmzd1: 5gmz D:1-144 [410112]
        Other proteins in same PDB: d5gmzb2, d5gmzd2, d5gmzf2
        automated match to d6htxb_
        complexed with 6xu, cl, gol, ipa; mutant
      5. 2716925Domain d5gmze_: 5gmz E: [321001]
        Other proteins in same PDB: d5gmzb2, d5gmzd2, d5gmzf2
        automated match to d4bmga_
        complexed with 6xu, cl, gol, ipa; mutant
      6. 2716926Domain d5gmzf1: 5gmz F:1-149 [410114]
        Other proteins in same PDB: d5gmzb2, d5gmzd2, d5gmzf2
        automated match to d6htxb_
        complexed with 6xu, cl, gol, ipa; mutant
    3. Domains for 5t2p:
      1. 2716915Domain d5t2pa1: 5t2p A:1-141 [378420]
        Other proteins in same PDB: d5t2pa2, d5t2pb2, d5t2pd2, d5t2pe2, d5t2pf2
        automated match to d5gmza_
        complexed with cl, dms, gol, ipa, k89; mutant
      2. 2716916Domain d5t2pb1: 5t2p B:1-149 [330117]
        Other proteins in same PDB: d5t2pa2, d5t2pb2, d5t2pd2, d5t2pe2, d5t2pf2
        automated match to d4bmga_
        complexed with cl, dms, gol, ipa, k89; mutant
      3. 2716917Domain d5t2pc_: 5t2p C: [330286]
        Other proteins in same PDB: d5t2pa2, d5t2pb2, d5t2pd2, d5t2pe2, d5t2pf2
        automated match to d4bmga_
        complexed with cl, dms, gol, ipa, k89; mutant
      4. 2716918Domain d5t2pd1: 5t2p D:1-149 [330198]
        Other proteins in same PDB: d5t2pa2, d5t2pb2, d5t2pd2, d5t2pe2, d5t2pf2
        automated match to d4bmga_
        complexed with cl, dms, gol, ipa, k89; mutant
      5. 2716919Domain d5t2pe1: 5t2p E:1-143 [378422]
        Other proteins in same PDB: d5t2pa2, d5t2pb2, d5t2pd2, d5t2pe2, d5t2pf2
        automated match to d5gmza_
        complexed with cl, dms, gol, ipa, k89; mutant
      6. 2716920Domain d5t2pf1: 5t2p F:1-142 [378424]
        Other proteins in same PDB: d5t2pa2, d5t2pb2, d5t2pd2, d5t2pe2, d5t2pf2
        automated match to d5gmza_
        complexed with cl, dms, gol, ipa, k89; mutant
    4. Domains for 5wre:
      1. 2716927Domain d5wrea_: 5wre A: [330275]
        Other proteins in same PDB: d5wred2, d5wref2
        automated match to d4bmga_
        complexed with 7tl, cl, gol, ipa; mutant
      2. 2716928Domain d5wreb_: 5wre B: [330235]
        Other proteins in same PDB: d5wred2, d5wref2
        automated match to d4bmga_
        complexed with 7tl, cl, gol, ipa; mutant
      3. 2716929Domain d5wrec_: 5wre C: [330287]
        Other proteins in same PDB: d5wred2, d5wref2
        automated match to d4bmga_
        complexed with 7tl, cl, gol, ipa; mutant
      4. 2716930Domain d5wred1: 5wre D:1-144 [378796]
        Other proteins in same PDB: d5wred2, d5wref2
        automated match to d5gmza_
        complexed with 7tl, cl, gol, ipa; mutant
      5. 2716931Domain d5wree_: 5wre E: [330269]
        Other proteins in same PDB: d5wred2, d5wref2
        automated match to d4bmga_
        complexed with 7tl, cl, gol, ipa; mutant
      6. 2716932Domain d5wref1: 5wre F:1-143 [378798]
        Other proteins in same PDB: d5wred2, d5wref2
        automated match to d5gmza_
        complexed with 7tl, cl, gol, ipa; mutant
    5. Domains for 5wtw:
      1. 2716947Domain d5wtwa_: 5wtw A: [330232]
        automated match to d4bmgc_
        complexed with cl; mutant
      2. 2716948Domain d5wtwb_: 5wtw B: [330241]
        automated match to d4bmgc_
        complexed with cl; mutant
    6. Domains for 6cvk:
      1. 2716937Domain d6cvkc_: 6cvk C: [356773]
        Other proteins in same PDB: d6cvka1, d6cvka2, d6cvka3, d6cvkb1, d6cvkb2, d6cvkb3
        automated match to d4bmga_
      2. 2716938Domain d6cvkd_: 6cvk D: [356692]
        Other proteins in same PDB: d6cvka1, d6cvka2, d6cvka3, d6cvkb1, d6cvkb2, d6cvkb3
        automated match to d4bmga_
    7. Domains for 6hu4:
      1. 2716939Domain d6hu4a_: 6hu4 A: [361779]
        automated match to d4bmga_
      2. 2716940Domain d6hu4b_: 6hu4 B: [361754]
        automated match to d4bmga_
      3. 2716941Domain d6hu4c_: 6hu4 C: [361677]
        automated match to d4bmga_
      4. 2716942Domain d6hu4d_: 6hu4 D: [361709]
        automated match to d4bmga_
    8. Domains for 6hu7:
      1. 2716943Domain d6hu7a_: 6hu7 A: [361692]
        automated match to d4bmga_
      2. 2716944Domain d6hu7b_: 6hu7 B: [361682]
        automated match to d4bmga_
      3. 2716945Domain d6hu7c_: 6hu7 C: [361770]
        automated match to d4bmga_
      4. 2716946Domain d6hu7d_: 6hu7 D: [361738]
        automated match to d4bmga_
    9. Domains for 7od4:
      1. 2716933Domain d7od4a_: 7od4 A: [406123]
        automated match to d4bmga_
      2. 2716934Domain d7od4b_: 7od4 B: [406155]
        automated match to d4bmga_
      3. 2716935Domain d7od4c_: 7od4 C: [406157]
        automated match to d4bmga_
      4. 2716936Domain d7od4d_: 7od4 D: [406156]
        automated match to d4bmga_

More info for Protein automated matches from a.62.1.1: Hepatitis B viral capsid (hbcag)

Timeline for Protein automated matches from a.62.1.1: Hepatitis B viral capsid (hbcag):