Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2325511Fold a.62: Hepatitis B viral capsid (hbcag) [47851] (1 superfamily)
    5 helices; array; two long helices form a hairpin that dimerizes into a 4-helical bundle
  4. 2325512Superfamily a.62.1: Hepatitis B viral capsid (hbcag) [47852] (1 family) (S)
    automatically mapped to Pfam PF00906
  5. 2325513Family a.62.1.1: Hepatitis B viral capsid (hbcag) [47853] (2 proteins)
  6. 2325520Protein automated matches [191131] (2 species)
    not a true protein

Species:

  1. 2325521Hepatitis B virus genotype d subtype adw [TaxId:10419] [189224] (3 PDB entries)
    1. Domains for 3kxs:
      1. 2325522Domain d3kxsa_: 3kxs A: [179796]
        automated match to d1qgtb_
        mutant
      2. 2325523Domain d3kxsb_: 3kxs B: [179797]
        automated match to d1qgtb_
        mutant
      3. 2325524Domain d3kxsc_: 3kxs C: [179798]
        automated match to d1qgtb_
        mutant
      4. 2325525Domain d3kxsd_: 3kxs D: [179799]
        automated match to d1qgtb_
        mutant
      5. 2325526Domain d3kxse_: 3kxs E: [179800]
        automated match to d1qgtb_
        mutant
      6. 2325527Domain d3kxsf_: 3kxs F: [179801]
        automated match to d1qgtb_
        mutant
    2. Domains for 5e0i:
      1. 2325528Domain d5e0ia1: 5e0i A:1-148 [279813]
        Other proteins in same PDB: d5e0ia2, d5e0ia3, d5e0ib2, d5e0ib3, d5e0ic2, d5e0ic3, d5e0id2, d5e0ie2, d5e0ie3, d5e0if2, d5e0if3
        automated match to d4bmga_
        complexed with 5j6; mutant
      2. 2325529Domain d5e0ib1: 5e0i B:1-148 [279811]
        Other proteins in same PDB: d5e0ia2, d5e0ia3, d5e0ib2, d5e0ib3, d5e0ic2, d5e0ic3, d5e0id2, d5e0ie2, d5e0ie3, d5e0if2, d5e0if3
        automated match to d4bmga_
        complexed with 5j6; mutant
      3. 2325530Domain d5e0ic1: 5e0i C:1-148 [279812]
        Other proteins in same PDB: d5e0ia2, d5e0ia3, d5e0ib2, d5e0ib3, d5e0ic2, d5e0ic3, d5e0id2, d5e0ie2, d5e0ie3, d5e0if2, d5e0if3
        automated match to d4bmga_
        complexed with 5j6; mutant
      4. 2325531Domain d5e0id1: 5e0i D:1-148 [279816]
        Other proteins in same PDB: d5e0ia2, d5e0ia3, d5e0ib2, d5e0ib3, d5e0ic2, d5e0ic3, d5e0id2, d5e0ie2, d5e0ie3, d5e0if2, d5e0if3
        automated match to d4bmga_
        complexed with 5j6; mutant
      5. 2325532Domain d5e0ie1: 5e0i E:1-148 [279817]
        Other proteins in same PDB: d5e0ia2, d5e0ia3, d5e0ib2, d5e0ib3, d5e0ic2, d5e0ic3, d5e0id2, d5e0ie2, d5e0ie3, d5e0if2, d5e0if3
        automated match to d4bmga_
        complexed with 5j6; mutant
      6. 2325533Domain d5e0if1: 5e0i F:1-148 [279814]
        Other proteins in same PDB: d5e0ia2, d5e0ia3, d5e0ib2, d5e0ib3, d5e0ic2, d5e0ic3, d5e0id2, d5e0ie2, d5e0ie3, d5e0if2, d5e0if3
        automated match to d4bmga_
        complexed with 5j6; mutant
    3. Domains for 6cwt:
      1. 3056656Domain d6cwte_: 6cwt E: [356718]
        Other proteins in same PDB: d6cwtb1, d6cwtb2, d6cwtd1, d6cwtd2
        automated match to d4bmga_
      2. 3056746Domain d6cwtf_: 6cwt F: [356808]
        Other proteins in same PDB: d6cwtb1, d6cwtb2, d6cwtd1, d6cwtd2
        automated match to d4bmga_
  2. 2325534Hepatitis B virus [TaxId:10407] [256206] (6 PDB entries)
    1. Domains for 4bmg:
      1. 2325545Domain d4bmga_: 4bmg A: [251276]
        automated match to d3kxse_
      2. 2325546Domain d4bmgb_: 4bmg B: [251277]
        automated match to d3kxse_
      3. 2325547Domain d4bmgc_: 4bmg C: [251278]
        automated match to d3kxse_
      4. 2325548Domain d4bmgd_: 4bmg D: [251279]
        automated match to d3kxse_
      5. 2325549Domain d4bmge_: 4bmg E: [251280]
        automated match to d3kxse_
      6. 2325550Domain d4bmgf_: 4bmg F: [251281]
        automated match to d3kxse_
    2. Domains for 5gmz:
      1. 2325538Domain d5gmza_: 5gmz A: [320998]
        automated match to d4bmga_
        complexed with 6xu, cl, gol, ipa; mutant
      2. 2325539Domain d5gmzc_: 5gmz C: [321009]
        automated match to d4bmga_
        complexed with 6xu, cl, gol, ipa; mutant
      3. 2325540Domain d5gmze_: 5gmz E: [321001]
        automated match to d4bmga_
        complexed with 6xu, cl, gol, ipa; mutant
    3. Domains for 5t2p:
      1. 2325535Domain d5t2pb1: 5t2p B:1-149 [330117]
        Other proteins in same PDB: d5t2pb2, d5t2pd2
        automated match to d4bmga_
        complexed with cl, dms, gol, ipa, k89; mutant
      2. 2325536Domain d5t2pc_: 5t2p C: [330286]
        Other proteins in same PDB: d5t2pb2, d5t2pd2
        automated match to d4bmga_
        complexed with cl, dms, gol, ipa, k89; mutant
      3. 2325537Domain d5t2pd1: 5t2p D:1-149 [330198]
        Other proteins in same PDB: d5t2pb2, d5t2pd2
        automated match to d4bmga_
        complexed with cl, dms, gol, ipa, k89; mutant
    4. Domains for 5wre:
      1. 2325541Domain d5wrea_: 5wre A: [330275]
        automated match to d4bmga_
        complexed with 7tl, cl, gol, ipa; mutant
      2. 2325542Domain d5wreb_: 5wre B: [330235]
        automated match to d4bmga_
        complexed with 7tl, cl, gol, ipa; mutant
      3. 2325543Domain d5wrec_: 5wre C: [330287]
        automated match to d4bmga_
        complexed with 7tl, cl, gol, ipa; mutant
      4. 2325544Domain d5wree_: 5wre E: [330269]
        automated match to d4bmga_
        complexed with 7tl, cl, gol, ipa; mutant
    5. Domains for 5wtw:
      1. 2325551Domain d5wtwa_: 5wtw A: [330232]
        automated match to d4bmgc_
        complexed with cl; mutant
      2. 2325552Domain d5wtwb_: 5wtw B: [330241]
        automated match to d4bmgc_
        complexed with cl; mutant
    6. Domains for 6cvk:
      1. 3056630Domain d6cvkd_: 6cvk D: [356692]
        Other proteins in same PDB: d6cvka1, d6cvka2, d6cvka3, d6cvkb1, d6cvkb2, d6cvkb3
        automated match to d4bmga_
      2. 3056711Domain d6cvkc_: 6cvk C: [356773]
        Other proteins in same PDB: d6cvka1, d6cvka2, d6cvka3, d6cvkb1, d6cvkb2, d6cvkb3
        automated match to d4bmga_

More info for Protein automated matches from a.62.1.1: Hepatitis B viral capsid (hbcag)

Timeline for Protein automated matches from a.62.1.1: Hepatitis B viral capsid (hbcag):