SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)
Fold b.2: Common fold of diphtheria toxin/transcription factors/cytochrome f [49379] (9 superfamilies)
sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
Superfamily b.2.2: Carbohydrate-binding domain [49384] (4 families)
Family b.2.2.0: automated matches [191610] (1 protein)
not a true family
Protein automated matches [191113] (13 species)
not a true protein

Species:

Acetivibrio cellulolyticus [TaxId:35830] [189869] (5 PDB entries)
1. Domain for 3zqw:
  - Domain d3zqwa1: 3zqw A:5-153 [186520]
    Other proteins in same PDB: d3zqwa2
    automated match to d1nbca_
    complexed with 1pe, ca, edo, ni
2. Domain for 3zu8:
  - Domain d3zu8a1: 3zu8 A:5-153 [186573]
    Other proteins in same PDB: d3zu8a2
    automated match to d1nbca_
    complexed with 1pe, ca, edo, ni
3. Domain for 3zuc:
  - Domain d3zuca1: 3zuc A:5-153 [186574]
    Other proteins in same PDB: d3zuca2
    automated match to d1nbca_
    complexed with 1pe, ca, edo, ni
4. Domains for 4uyp:
  1. Domain d4uypa1: 4uyp A:2-143 [271529]
    Other proteins in same PDB: d4uypa2, d4uypa3, d4uypb_, d4uypc2, d4uypc3, d4uypd_
    automated match to d4dh2a_
    complexed with ca, epe, mpd, so4; mutant
  2. Domain d4uypc1: 4uyp C:2-143 [271531]
    Other proteins in same PDB: d4uypa2, d4uypa3, d4uypb_, d4uypc2, d4uypc3, d4uypd_
    automated match to d4dh2a_
    complexed with ca, epe, mpd, so4; mutant
5. Domain for 4uyq:
  - Domain d4uyqa1: 4uyq A:2-143 [271530]
    Other proteins in same PDB: d4uyqa2, d4uyqa3, d4uyqb_
    automated match to d4dh2a_
    complexed with ca; mutant
Bacillus subtilis [TaxId:1423] [255415] (1 PDB entry)
- Domain for 2l8a:
  - Domain d2l8aa1: 2l8a A:354-499 [242806]
    Other proteins in same PDB: d2l8aa2
    automated match to d4b97a_
Bacillus subtilis [TaxId:224308] [392320] (2 PDB entries)
1. Domain for 6ufv:
  - Domain d6ufva_: 6ufv A: [392321]
    automated match to d1nbca_
    complexed with peg
2. Domain for 6ufw:
  - Domain d6ufwa_: 6ufw A: [392358]
    automated match to d1nbca_
Bacteroides cellulosolvens [TaxId:35825] [189900] (2 PDB entries)
1. Domain for 2xbt:
  - Domain d2xbta_: 2xbt A: [170004]
    automated match to d1nbca_
    complexed with no3
2. Domain for 4ums:
  - Domain d4umsa1: 4ums A:1039-1186 [272407]
    Other proteins in same PDB: d4umsa2
    automated match to d2ccla_
Caldicellulosiruptor sp. [TaxId:1387557] [367999] (1 PDB entry)
- Domains for 6d5b:
  1. Domain d6d5ba_: 6d5b A: [368016]
    automated match to d4jo5a_
    complexed with ca
  2. Domain d6d5bb_: 6d5b B: [368027]
    automated match to d4jo5a_
    complexed with ca
  3. Domain d6d5bc_: 6d5b C: [368104]
    automated match to d4jo5a_
    complexed with ca
  4. Domain d6d5bd_: 6d5b D: [368059]
    automated match to d4jo5a_
    complexed with ca
  5. Domain d6d5be_: 6d5b E: [368024]
    automated match to d4jo5a_
    complexed with ca
  6. Domain d6d5bf_: 6d5b F: [368001]
    automated match to d4jo5a_
    complexed with ca
  7. Domain d6d5bg_: 6d5b G: [368022]
    automated match to d4jo5a_
    complexed with ca
  8. Domain d6d5bh_: 6d5b H: [368058]
    automated match to d4jo5a_
    complexed with ca
  9. Domain d6d5bi_: 6d5b I: [368000]
    automated match to d4jo5a_
    complexed with ca
  10. Domain d6d5bj_: 6d5b J: [368023]
    automated match to d4jo5a_
    complexed with ca
  11. Domain d6d5bk_: 6d5b K: [368062]
    automated match to d4jo5a_
    complexed with ca
  12. Domain d6d5bl_: 6d5b L: [368002]
    automated match to d4jo5a_
    complexed with ca
Clostridium cellulovorans [TaxId:1493] [419862] (2 PDB entries)
1. Domains for 3ndy:
  1. Domain d3ndye_: 3ndy E: [408524]
    Other proteins in same PDB: d3ndya_, d3ndyb_, d3ndyc_, d3ndyd_
    automated match to d6qfsa_
    complexed with btb
  2. Domain d3ndyf_: 3ndy F: [408525]
    Other proteins in same PDB: d3ndya_, d3ndyb_, d3ndyc_, d3ndyd_
    automated match to d6qfsa_
    complexed with btb
  3. Domain d3ndyg_: 3ndy G: [408526]
    Other proteins in same PDB: d3ndya_, d3ndyb_, d3ndyc_, d3ndyd_
    automated match to d6qfsa_
    complexed with btb
  4. Domain d3ndyh_: 3ndy H: [408527]
    Other proteins in same PDB: d3ndya_, d3ndyb_, d3ndyc_, d3ndyd_
    automated match to d6qfsa_
    complexed with btb
2. Domains for 3ndz:
  1. Domain d3ndze_: 3ndz E: [408528]
    Other proteins in same PDB: d3ndza_, d3ndzb_, d3ndzc_, d3ndzd_
    automated match to d6qfsa_
  2. Domain d3ndzf_: 3ndz F: [408529]
    Other proteins in same PDB: d3ndza_, d3ndzb_, d3ndzc_, d3ndzd_
    automated match to d6qfsa_
  3. Domain d3ndzg_: 3ndz G: [408530]
    Other proteins in same PDB: d3ndza_, d3ndzb_, d3ndzc_, d3ndzd_
    automated match to d6qfsa_
  4. Domain d3ndzh_: 3ndz H: [408531]
    Other proteins in same PDB: d3ndza_, d3ndzb_, d3ndzc_, d3ndzd_
    automated match to d6qfsa_
Clostridium clariflavum [TaxId:288965] [227912] (1 PDB entry)
- Domain for 4b96:
  - Domain d4b96a1: 4b96 A:4-151 [227913]
    Other proteins in same PDB: d4b96a2
    automated match to d4b9fb_
    complexed with ca, cl
Clostridium thermocellum [TaxId:1515] [189176] (12 PDB entries)
1. Domain for 2wnx:
  - Domain d2wnxa1: 2wnx A:6-159 [169494]
    Other proteins in same PDB: d2wnxa2
    automated match to d1g43a_
    complexed with ca, fmt, so4
2. Domain for 2wo4:
  - Domain d2wo4a1: 2wo4 A:4-159 [169504]
    Other proteins in same PDB: d2wo4a2
    automated match to d1g43a_
    complexed with ca, cl, so4
3. Domains for 2wob:
  1. Domain d2woba1: 2wob A:11-159 [169522]
    Other proteins in same PDB: d2woba2, d2wobc2, d2wobe2
    automated match to d1g43a_
    complexed with ca
  2. Domain d2wobc1: 2wob C:9-159 [169523]
    Other proteins in same PDB: d2woba2, d2wobc2, d2wobe2
    automated match to d1g43a_
    complexed with ca
  3. Domain d2wobe1: 2wob E:8-159 [169524]
    Other proteins in same PDB: d2woba2, d2wobc2, d2wobe2
    automated match to d1g43a_
    complexed with ca
4. Domains for 2ylk:
  1. Domain d2ylka1: 2ylk A:1-144 [198766]
    Other proteins in same PDB: d2ylka2
    automated match to d2ylkc_
  2. Domain d2ylkb_: 2ylk B: [195486]
    Other proteins in same PDB: d2ylka2
    automated match to d3zuca_
  3. Domain d2ylkc_: 2ylk C: [195485]
    Other proteins in same PDB: d2ylka2
    automated match to d3zuca_
  4. Domain d2ylkd_: 2ylk D: [198767]
    Other proteins in same PDB: d2ylka2
    automated match to d2ylkc_
5. Domain for 3zqx:
  - Domain d3zqxa1: 3zqx A:1-145 [195484]
    Other proteins in same PDB: d3zqxa2
    automated match to d3zuca_
    complexed with ca
6. Domain for 4b97:
  - Domain d4b97a1: 4b97 A:3-151 [227826]
    Other proteins in same PDB: d4b97a2
    automated match to d4b9fb_
    complexed with ca
7. Domain for 4b9p:
  - Domain d4b9pa_: 4b9p A: [227824]
    automated match to d3zuca_
    complexed with ca, zn
8. Domains for 5gxx:
  1. Domain d5gxxa2: 5gxx A:472-628 [339457]
    Other proteins in same PDB: d5gxxa1, d5gxxa3, d5gxxb1
    automated match to d1tf4a2
    complexed with ca, cl, trs
  2. Domain d5gxxb2: 5gxx B:472-628 [339453]
    Other proteins in same PDB: d5gxxa1, d5gxxa3, d5gxxb1
    automated match to d1tf4a2
    complexed with ca, cl, trs
9. Domains for 5gxy:
  1. Domain d5gxya2: 5gxy A:472-628 [339440]
    Other proteins in same PDB: d5gxya1, d5gxyb1
    automated match to d1tf4a2
    complexed with 7pe, br, ca, cl, trs
  2. Domain d5gxyb2: 5gxy B:472-628 [339444]
    Other proteins in same PDB: d5gxya1, d5gxyb1
    automated match to d1tf4a2
    complexed with 7pe, br, ca, cl, trs
10. Domains for 5gxz:
  1. Domain d5gxza2: 5gxz A:472-628 [339448]
    Other proteins in same PDB: d5gxza1, d5gxzb1
    automated match to d1tf4a2
    complexed with 7pe, br, ca, cl
  2. Domain d5gxzb2: 5gxz B:472-628 [339450]
    Other proteins in same PDB: d5gxza1, d5gxzb1
    automated match to d1tf4a2
    complexed with 7pe, br, ca, cl
11. Domains for 5gy0:
  1. Domain d5gy0a2: 5gy0 A:472-628 [339495]
    Other proteins in same PDB: d5gy0a1, d5gy0b1
    automated match to d1tf4a2
    complexed with br, ca, cl, pg4
  2. Domain d5gy0b2: 5gy0 B:472-628 [339446]
    Other proteins in same PDB: d5gy0a1, d5gy0b1
    automated match to d1tf4a2
    complexed with br, ca, cl, pg4
12. Domains for 5gy1:
  1. Domain d5gy1a2: 5gy1 A:472-628 [339442]
    Other proteins in same PDB: d5gy1a1, d5gy1b1
    automated match to d1tf4a2
    complexed with br, ca, cl
  2. Domain d5gy1b2: 5gy1 B:472-628 [339481]
    Other proteins in same PDB: d5gy1a1, d5gy1b1
    automated match to d1tf4a2
    complexed with br, ca, cl
Clostridium thermocellum [TaxId:203119] [194259] (5 PDB entries)
1. Domain for 3ul4:
  - Domain d3ul4a_: 3ul4 A: [194260]
    Other proteins in same PDB: d3ul4b_
    automated match to d1aohb_
    complexed with ca, peg, so4
2. Domain for 4b9c:
  - Domain d4b9ca1: 4b9c A:5-150 [227825]
    Other proteins in same PDB: d4b9ca2
    automated match to d4b9fb_
    complexed with ca
3. Domains for 4c8x:
  1. Domain d4c8xa_: 4c8x A: [228169]
    automated match to d4b9fb_
    mutant
  2. Domain d4c8xb_: 4c8x B: [234292]
    automated match to d4c8xd_
    mutant
  3. Domain d4c8xc_: 4c8x C: [234293]
    automated match to d4c8xd_
    mutant
  4. Domain d4c8xd_: 4c8x D: [228168]
    automated match to d4b9fb_
    mutant
4. Domains for 4dh2:
  1. Domain d4dh2a1: 4dh2 A:7-162 [234314]
    Other proteins in same PDB: d4dh2a2, d4dh2b_, d4dh2c2, d4dh2d_
    automated match to d3ul4a_
    complexed with ca, so4
  2. Domain d4dh2c1: 4dh2 C:8-162 [234315]
    Other proteins in same PDB: d4dh2a2, d4dh2b_, d4dh2c2, d4dh2d_
    automated match to d3ul4a_
    complexed with ca, so4
5. Domains for 6sl4:
  1. Domain d6sl4a_: 6sl4 A: [382468]
    automated match to d1g43a_
    complexed with ca
  2. Domain d6sl4b_: 6sl4 B: [382422]
    automated match to d1g43a_
    complexed with ca
  3. Domain d6sl4c_: 6sl4 C: [382416]
    automated match to d1g43a_
    complexed with ca
Hungateiclostridium clariflavum [TaxId:720554] [385250] (1 PDB entry)
- Domains for 6xx1:
  1. Domain d6xx1a_: 6xx1 A: [385281]
    Other proteins in same PDB: d6xx1c2, d6xx1d2
    automated match to d4b9pa_
  2. Domain d6xx1b_: 6xx1 B: [385274]
    Other proteins in same PDB: d6xx1c2, d6xx1d2
    automated match to d4b9pa_
  3. Domain d6xx1c1: 6xx1 C:22-169 [385275]
    Other proteins in same PDB: d6xx1c2, d6xx1d2
    automated match to d4b9pa_
  4. Domain d6xx1d1: 6xx1 D:22-169 [385251]
    Other proteins in same PDB: d6xx1c2, d6xx1d2
    automated match to d4b9pa_
Ruminiclostridium thermocellum [TaxId:1138384] [332524] (1 PDB entry)
- Domain for 5g5d:
  - Domain d5g5da_: 5g5d A: [332528]
    Other proteins in same PDB: d5g5db1, d5g5db2
    automated match to d4fl4b_
    complexed with ca
Ruminiclostridium thermocellum [TaxId:1249482] [332429] (1 PDB entry)
- Domain for 5k39:
  - Domain d5k39a1: 5k39 A:4-163 [332430]
    Other proteins in same PDB: d5k39a2, d5k39a3, d5k39b1, d5k39b2
    automated match to d4fl4b_
    complexed with ca
Ruminococcus flavefaciens [TaxId:641112] [324254] (1 PDB entry)
- Domains for 5lxv:
  1. Domain d5lxva_: 5lxv A: [324285]
    automated match to d3ul4a_
    complexed with ca
  2. Domain d5lxvc_: 5lxv C: [324255]
    automated match to d3ul4a_
    complexed with ca

More info for Protein automated matches from b.2.2.0: automated matches

Timeline for Protein automated matches from b.2.2.0: automated matches:

Protein automated matches from b.2.2.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from b.2.2.0: automated matches appears in SCOPe 2.07