SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.124: NagB/RpiA/CoA transferase-like [100949] (1 superfamily)
core: 3 layers: a/b/a; parallel or mixed beta-sheet of 6 strands, order 321456
Superfamily c.124.1: NagB/RpiA/CoA transferase-like [100950] (9 families)
Family c.124.1.0: automated matches [191609] (1 protein)
not a true family
Protein automated matches [191112] (17 species)
not a true protein

Species:

Acetobacter aceti [TaxId:1457393] [316891] (2 PDB entries)
1. Domains for 5dw4:
  1. Domain d5dw4a1: 5dw4 A:3-229 [316894]
    Other proteins in same PDB: d5dw4a3
    automated match to d4eu3a1
    complexed with act, imd
  2. Domain d5dw4b1: 5dw4 B:2-229 [316892]
    Other proteins in same PDB: d5dw4a3
    automated match to d4eu3a1
    complexed with act, imd
2. Domain for 5dw5:
  - Domain d5dw5b1: 5dw5 B:3-229 [316893]
    Other proteins in same PDB: d5dw5a3
    automated match to d4eu3a1
    complexed with 0t1, act, cl, imd
Acetobacter aceti [TaxId:435] [226493] (16 PDB entries)
1. Domains for 4eu3:
  1. Domain d4eu3a1: 4eu3 A:2-229 [220808]
    Other proteins in same PDB: d4eu3a3
    automated match to d2g39a1
    complexed with cit, cl
  2. Domain d4eu3a2: 4eu3 A:230-505 [220809]
    Other proteins in same PDB: d4eu3a3
    automated match to d2g39a2
    complexed with cit, cl
  3. Domain d4eu3b1: 4eu3 B:2-229 [220810]
    Other proteins in same PDB: d4eu3a3
    automated match to d2g39a1
    complexed with cit, cl
  4. Domain d4eu3b2: 4eu3 B:230-505 [220811]
    Other proteins in same PDB: d4eu3a3
    automated match to d2g39a2
    complexed with cit, cl
2. Domains for 4eu4:
  1. Domain d4eu4a1: 4eu4 A:2-229 [220812]
    automated match to d2g39a1
    complexed with cl, coa, so4
  2. Domain d4eu4a2: 4eu4 A:230-505 [220813]
    automated match to d2g39a2
    complexed with cl, coa, so4
  3. Domain d4eu4b1: 4eu4 B:2-229 [220814]
    automated match to d2g39a1
    complexed with cl, coa, so4
  4. Domain d4eu4b2: 4eu4 B:230-505 [220815]
    automated match to d2g39a2
    complexed with cl, coa, so4
3. Domains for 4eu5:
  1. Domain d4eu5a1: 4eu5 A:2-229 [220816]
    Other proteins in same PDB: d4eu5a3
    automated match to d2g39a1
    complexed with cl, coa
  2. Domain d4eu5a2: 4eu5 A:230-505 [220817]
    Other proteins in same PDB: d4eu5a3
    automated match to d2g39a2
    complexed with cl, coa
  3. Domain d4eu5b1: 4eu5 B:2-229 [220818]
    Other proteins in same PDB: d4eu5a3
    automated match to d2g39a1
    complexed with cl, coa
  4. Domain d4eu5b2: 4eu5 B:230-505 [220819]
    Other proteins in same PDB: d4eu5a3
    automated match to d2g39a2
    complexed with cl, coa
4. Domains for 4eu6:
  1. Domain d4eu6a1: 4eu6 A:2-229 [220820]
    Other proteins in same PDB: d4eu6a3
    automated match to d2g39a1
    complexed with act, cl, coa
  2. Domain d4eu6a2: 4eu6 A:230-505 [220821]
    Other proteins in same PDB: d4eu6a3
    automated match to d2g39a2
    complexed with act, cl, coa
  3. Domain d4eu6b1: 4eu6 B:2-229 [220822]
    Other proteins in same PDB: d4eu6a3
    automated match to d2g39a1
    complexed with act, cl, coa
  4. Domain d4eu6b2: 4eu6 B:230-505 [220823]
    Other proteins in same PDB: d4eu6a3
    automated match to d2g39a2
    complexed with act, cl, coa
5. Domains for 4eu7:
  1. Domain d4eu7a1: 4eu7 A:2-229 [220824]
    Other proteins in same PDB: d4eu7a3
    automated match to d2g39a1
    complexed with cit, cl, coa
  2. Domain d4eu7a2: 4eu7 A:230-505 [220825]
    Other proteins in same PDB: d4eu7a3
    automated match to d2g39a2
    complexed with cit, cl, coa
  3. Domain d4eu7b1: 4eu7 B:2-229 [220826]
    Other proteins in same PDB: d4eu7a3
    automated match to d2g39a1
    complexed with cit, cl, coa
  4. Domain d4eu7b2: 4eu7 B:230-505 [220827]
    Other proteins in same PDB: d4eu7a3
    automated match to d2g39a2
    complexed with cit, cl, coa
6. Domains for 4eu8:
  1. Domain d4eu8a1: 4eu8 A:2-229 [220828]
    automated match to d2g39a1
    complexed with cl, coa
  2. Domain d4eu8a2: 4eu8 A:230-505 [220829]
    automated match to d2g39a2
    complexed with cl, coa
  3. Domain d4eu8b1: 4eu8 B:2-229 [220830]
    automated match to d2g39a1
    complexed with cl, coa
  4. Domain d4eu8b2: 4eu8 B:230-505 [220831]
    automated match to d2g39a2
    complexed with cl, coa
7. Domains for 4eu9:
  1. Domain d4eu9a1: 4eu9 A:2-230 [220832]
    Other proteins in same PDB: d4eu9a3
    automated match to d2g39a1
    complexed with cl, coa
  2. Domain d4eu9a2: 4eu9 A:231-505 [220833]
    Other proteins in same PDB: d4eu9a3
    automated match to d2g39a2
    complexed with cl, coa
  3. Domain d4eu9b1: 4eu9 B:2-230 [220834]
    Other proteins in same PDB: d4eu9a3
    automated match to d2g39a1
    complexed with cl, coa
  4. Domain d4eu9b2: 4eu9 B:231-505 [220835]
    Other proteins in same PDB: d4eu9a3
    automated match to d2g39a2
    complexed with cl, coa
8. Domains for 4eua:
  1. Domain d4euaa1: 4eua A:2-230 [220836]
    Other proteins in same PDB: d4euaa3
    automated match to d2g39a1
    complexed with cl, coa
  2. Domain d4euaa2: 4eua A:231-505 [220837]
    Other proteins in same PDB: d4euaa3
    automated match to d2g39a2
    complexed with cl, coa
  3. Domain d4euab1: 4eua B:2-230 [220838]
    Other proteins in same PDB: d4euaa3
    automated match to d2g39a1
    complexed with cl, coa
  4. Domain d4euab2: 4eua B:231-505 [220839]
    Other proteins in same PDB: d4euaa3
    automated match to d2g39a2
    complexed with cl, coa
9. Domains for 4eub:
  1. Domain d4euba1: 4eub A:2-229 [220840]
    automated match to d2g39a1
    complexed with cl, coa
  2. Domain d4euba2: 4eub A:230-505 [220841]
    automated match to d2g39a2
    complexed with cl, coa
  3. Domain d4eubb1: 4eub B:2-229 [220842]
    automated match to d2g39a1
    complexed with cl, coa
  4. Domain d4eubb2: 4eub B:230-505 [220843]
    automated match to d2g39a2
    complexed with cl, coa
10. Domains for 4euc:
  1. Domain d4euca1: 4euc A:2-229 [220844]
    automated match to d2g39a1
    complexed with 0rq, cl
  2. Domain d4euca2: 4euc A:230-505 [220845]
    automated match to d2g39a2
    complexed with 0rq, cl
  3. Domain d4eucb1: 4euc B:2-229 [220846]
    automated match to d2g39a1
    complexed with 0rq, cl
  4. Domain d4eucb2: 4euc B:230-505 [220847]
    automated match to d2g39a2
    complexed with 0rq, cl
11. Domains for 4eud:
  1. Domain d4euda1: 4eud A:2-229 [220848]
    automated match to d2g39a1
    complexed with cit, cl, coa
  2. Domain d4euda2: 4eud A:230-505 [220849]
    automated match to d2g39a2
    complexed with cit, cl, coa
  3. Domain d4eudb1: 4eud B:2-229 [220850]
    automated match to d2g39a1
    complexed with cit, cl, coa
  4. Domain d4eudb2: 4eud B:230-505 [220851]
    automated match to d2g39a2
    complexed with cit, cl, coa
12. Domains for 5ddk:
  1. Domain d5ddka1: 5ddk A:2-229 [316919]
    Other proteins in same PDB: d5ddka3
    automated match to d4eu3a1
    complexed with cl, coa, imd
  2. Domain d5ddka2: 5ddk A:230-505 [316920]
    Other proteins in same PDB: d5ddka3
    automated match to d4eu3a2
    complexed with cl, coa, imd
  3. Domain d5ddkb1: 5ddk B:2-229 [316912]
    Other proteins in same PDB: d5ddka3
    automated match to d4eu3a1
    complexed with cl, coa, imd
  4. Domain d5ddkb2: 5ddk B:230-505 [316913]
    Other proteins in same PDB: d5ddka3
    automated match to d4eu3a2
    complexed with cl, coa, imd
13. Domains for 5dw4:
  1. Domain d5dw4a2: 5dw4 A:230-505 [316897]
    Other proteins in same PDB: d5dw4a3
    automated match to d4eu3a2
    complexed with act, imd
  2. Domain d5dw4b2: 5dw4 B:230-505 [316895]
    Other proteins in same PDB: d5dw4a3
    automated match to d4eu3a2
    complexed with act, imd
14. Domains for 5dw5:
  1. Domain d5dw5a1: 5dw5 A:3-229 [316899]
    Other proteins in same PDB: d5dw5a3
    automated match to d4eu3a1
    complexed with 0t1, act, cl, imd
  2. Domain d5dw5a2: 5dw5 A:230-505 [316900]
    Other proteins in same PDB: d5dw5a3
    automated match to d4eu3a2
    complexed with 0t1, act, cl, imd
  3. Domain d5dw5b2: 5dw5 B:230-505 [316896]
    Other proteins in same PDB: d5dw5a3
    automated match to d4eu3a2
    complexed with 0t1, act, cl, imd
15. Domains for 5dw6:
  1. Domain d5dw6a1: 5dw6 A:3-229 [317156]
    Other proteins in same PDB: d5dw6a3
    automated match to d4eu3a1
    complexed with 0t1, act, imd
  2. Domain d5dw6a2: 5dw6 A:230-505 [317157]
    Other proteins in same PDB: d5dw6a3
    automated match to d4eu3a2
    complexed with 0t1, act, imd
  3. Domain d5dw6b1: 5dw6 B:2-229 [317095]
    Other proteins in same PDB: d5dw6a3
    automated match to d4eu3a1
    complexed with 0t1, act, imd
  4. Domain d5dw6b2: 5dw6 B:230-505 [317096]
    Other proteins in same PDB: d5dw6a3
    automated match to d4eu3a2
    complexed with 0t1, act, imd
16. Domains for 5e5h:
  1. Domain d5e5ha1: 5e5h A:2-229 [317571]
    Other proteins in same PDB: d5e5ha3
    automated match to d4eu3a1
    complexed with 0t1, ace, act, cl, fmt, imd
  2. Domain d5e5ha2: 5e5h A:230-505 [317572]
    Other proteins in same PDB: d5e5ha3
    automated match to d4eu3a2
    complexed with 0t1, ace, act, cl, fmt, imd
  3. Domain d5e5hb1: 5e5h B:2-229 [317414]
    Other proteins in same PDB: d5e5ha3
    automated match to d4eu3a1
    complexed with 0t1, ace, act, cl, fmt, imd
  4. Domain d5e5hb2: 5e5h B:230-505 [317415]
    Other proteins in same PDB: d5e5ha3
    automated match to d4eu3a2
    complexed with 0t1, ace, act, cl, fmt, imd
Arthrobacter aurescens [TaxId:290340] [189428] (1 PDB entry)
- Domains for 3nze:
  1. Domain d3nzea1: 3nze A:56-315 [182657]
    Other proteins in same PDB: d3nzea2, d3nzeb2
    automated match to d2gnpa1
    complexed with ca
  2. Domain d3nzeb1: 3nze B:56-316 [182658]
    Other proteins in same PDB: d3nzea2, d3nzeb2
    automated match to d2gnpa1
    complexed with ca
Bacillus subtilis [TaxId:1423] [225422] (1 PDB entry)
- Domains for 3cdk:
  1. Domain d3cdka_: 3cdk A: [208852]
    automated match to d1k6da_
  2. Domain d3cdkc_: 3cdk C: [208853]
    automated match to d1k6da_
Bacillus subtilis [TaxId:224308] [257310] (2 PDB entries)
1. Domain for 4oqp:
  - Domain d4oqpa_: 4oqp A: [257311]
    automated match to d3nzeb_
    complexed with cd, co, mg, ni, ped
2. Domains for 4oqq:
  1. Domain d4oqqa_: 4oqq A: [259877]
    automated match to d3nzeb_
    complexed with bcn
  2. Domain d4oqqb_: 4oqq B: [263326]
    automated match to d3nzeb_
    complexed with bcn
Borrelia burgdorferi [TaxId:224326] [225689] (1 PDB entry)
- Domains for 3hn6:
  1. Domain d3hn6a1: 3hn6 A:1-268 [211146]
    Other proteins in same PDB: d3hn6a2, d3hn6b2, d3hn6c2, d3hn6d2, d3hn6e2, d3hn6f2
    automated match to d1fsfa_
    complexed with pop
  2. Domain d3hn6b1: 3hn6 B:1-267 [211147]
    Other proteins in same PDB: d3hn6a2, d3hn6b2, d3hn6c2, d3hn6d2, d3hn6e2, d3hn6f2
    automated match to d1fsfa_
    complexed with pop
  3. Domain d3hn6c1: 3hn6 C:1-268 [211148]
    Other proteins in same PDB: d3hn6a2, d3hn6b2, d3hn6c2, d3hn6d2, d3hn6e2, d3hn6f2
    automated match to d1fsfa_
    complexed with pop
  4. Domain d3hn6d1: 3hn6 D:1-267 [211149]
    Other proteins in same PDB: d3hn6a2, d3hn6b2, d3hn6c2, d3hn6d2, d3hn6e2, d3hn6f2
    automated match to d1fsfa_
    complexed with pop
  5. Domain d3hn6e1: 3hn6 E:1-267 [211150]
    Other proteins in same PDB: d3hn6a2, d3hn6b2, d3hn6c2, d3hn6d2, d3hn6e2, d3hn6f2
    automated match to d1fsfa_
    complexed with pop
  6. Domain d3hn6f1: 3hn6 F:1-267 [211151]
    Other proteins in same PDB: d3hn6a2, d3hn6b2, d3hn6c2, d3hn6d2, d3hn6e2, d3hn6f2
    automated match to d1fsfa_
    complexed with pop
Escherichia coli [TaxId:668369] [321686] (1 PDB entry)
- Domains for 5dbn:
  1. Domain d5dbna_: 5dbn A: [321690]
    automated match to d3cdkc_
    complexed with cl, gol, peg, po4
  2. Domain d5dbnc_: 5dbn C: [321768]
    automated match to d3cdkc_
    complexed with cl, gol, peg, po4
  3. Domain d5dbne_: 5dbn E: [321687]
    automated match to d3cdkc_
    complexed with cl, gol, peg, po4
  4. Domain d5dbng_: 5dbn G: [321728]
    automated match to d3cdkc_
    complexed with cl, gol, peg, po4
Escherichia coli [TaxId:83333] [267961] (4 PDB entries)
1. Domains for 4l4y:
  1. Domain d4l4ya_: 4l4y A: [266618]
    automated match to d4r9na_
    protein/DNA complex
  2. Domain d4l4yb_: 4l4y B: [266619]
    automated match to d4r9na_
    protein/DNA complex
2. Domains for 4l4z:
  1. Domain d4l4za_: 4l4z A: [266620]
    automated match to d4r9na_
    protein/DNA complex; complexed with d5x
  2. Domain d4l4zb_: 4l4z B: [266621]
    automated match to d4r9na_
    protein/DNA complex; complexed with d5x
3. Domains for 4l50:
  1. Domain d4l50a_: 4l50 A: [266622]
    automated match to d4r9na_
    protein/DNA complex; complexed with d8x
  2. Domain d4l50b_: 4l50 B: [266623]
    automated match to d4r9na_
    protein/DNA complex; complexed with d8x
4. Domains for 4l51:
  1. Domain d4l51a_: 4l51 A: [266624]
    automated match to d4r9na_
    protein/DNA complex; complexed with hsx
  2. Domain d4l51b_: 4l51 B: [266625]
    automated match to d4r9na_
    protein/DNA complex; complexed with hsx
Fruit fly (Drosophila melanogaster) [TaxId:7227] [228466] (1 PDB entry)
- Domains for 4kgb:
  1. Domain d4kgba1: 4kgb A:34-278 [228467]
    automated match to d3dlxb1
    complexed with so4
  2. Domain d4kgba2: 4kgb A:297-515 [228469]
    automated match to d3dlxb2
    complexed with so4
  3. Domain d4kgbb1: 4kgb B:34-278 [228468]
    automated match to d3dlxb1
    complexed with so4
  4. Domain d4kgbb2: 4kgb B:297-516 [228470]
    automated match to d3dlxb2
    complexed with so4
Helicobacter pylori [TaxId:210] [226164] (1 PDB entry)
- Domains for 3rrl:
  1. Domain d3rrla_: 3rrl A: [216023]
    automated match to d1k6da_
    complexed with gol
  2. Domain d3rrlc_: 3rrl C: [216024]
    automated match to d1k6da_
    complexed with gol
Listeria monocytogenes [TaxId:169963] [259718] (1 PDB entry)
- Domain for 4r9n:
  - Domain d4r9na1: 4r9n A:61-311 [259719]
    Other proteins in same PDB: d4r9na2
    automated match to d3efbd_
Mycobacterium tuberculosis [TaxId:1773] [350191] (1 PDB entry)
- Domains for 6con:
  1. Domain d6conb_: 6con B: [350192]
    automated match to d5n00b_
  2. Domain d6cond_: 6con D: [350311]
    automated match to d5n00b_
  3. Domain d6conf_: 6con F: [350477]
    automated match to d5n00b_
  4. Domain d6conh_: 6con H: [350467]
    automated match to d5n00b_
Myxococcus xanthus [TaxId:246197] [334864] (8 PDB entries)
1. Domains for 5mzw:
  1. Domain d5mzwb_: 5mzw B: [334868]
    automated match to d1poib_
    complexed with gol
  2. Domain d5mzwd_: 5mzw D: [334962]
    automated match to d1poib_
    complexed with gol
2. Domains for 5mzx:
  1. Domain d5mzxb_: 5mzx B: [334865]
    automated match to d1poib_
    complexed with 4ps, act, gol
  2. Domain d5mzxd_: 5mzx D: [334952]
    automated match to d1poib_
    complexed with 4ps, act, gol
3. Domains for 5mzy:
  1. Domain d5mzyb_: 5mzy B: [334955]
    automated match to d1poib_
    complexed with 8ez, act, gol
  2. Domain d5mzyd_: 5mzy D: [334885]
    automated match to d1poib_
    complexed with 8ez, act, gol
4. Domains for 5mzz:
  1. Domain d5mzzb_: 5mzz B: [334879]
    automated match to d1poib_
    complexed with 8ew, act, gol
  2. Domain d5mzzd_: 5mzz D: [334874]
    automated match to d1poib_
    complexed with 8ew, act, gol
5. Domains for 5n00:
  1. Domain d5n00b_: 5n00 B: [334926]
    automated match to d1poib_
    complexed with act
  2. Domain d5n00d_: 5n00 D: [334888]
    automated match to d1poib_
    complexed with act
6. Domains for 5n01:
  1. Domain d5n01b_: 5n01 B: [334985]
    automated match to d1poib_
    complexed with act, gol
  2. Domain d5n01d_: 5n01 D: [334932]
    automated match to d1poib_
    complexed with act, gol
7. Domains for 5n02:
  1. Domain d5n02b_: 5n02 B: [334900]
    automated match to d1poib_
    complexed with act
  2. Domain d5n02d_: 5n02 D: [335024]
    automated match to d1poib_
    complexed with act
8. Domains for 5n03:
  1. Domain d5n03b_: 5n03 B: [334887]
    automated match to d1poib_
    complexed with act
  2. Domain d5n03d_: 5n03 D: [334969]
    automated match to d1poib_
    complexed with act
Porphyromonas gingivalis [TaxId:242619] [225221] (1 PDB entry)
- Domains for 2nvv:
  1. Domain d2nvva1: 2nvv A:2-218 [205185]
    automated match to d2g39a1
    complexed with zn
  2. Domain d2nvva2: 2nvv A:219-497 [205186]
    automated match to d2g39a2
    complexed with zn
  3. Domain d2nvvb1: 2nvv B:2-218 [205187]
    automated match to d2g39a1
    complexed with zn
  4. Domain d2nvvb2: 2nvv B:219-497 [205188]
    automated match to d2g39a2
    complexed with zn
  5. Domain d2nvvc1: 2nvv C:2-218 [205189]
    automated match to d2g39a1
    complexed with zn
  6. Domain d2nvvc2: 2nvv C:219-497 [205190]
    automated match to d2g39a2
    complexed with zn
  7. Domain d2nvvd1: 2nvv D:2-218 [205191]
    automated match to d2g39a1
    complexed with zn
  8. Domain d2nvvd2: 2nvv D:219-497 [205192]
    automated match to d2g39a2
    complexed with zn
  9. Domain d2nvve1: 2nvv E:2-218 [205193]
    automated match to d2g39a1
    complexed with zn
  10. Domain d2nvve2: 2nvv E:219-497 [205194]
    automated match to d2g39a2
    complexed with zn
  11. Domain d2nvvf1: 2nvv F:2-218 [205195]
    automated match to d2g39a1
    complexed with zn
  12. Domain d2nvvf2: 2nvv F:219-497 [205196]
    automated match to d2g39a2
    complexed with zn
Pyrococcus horikoshii [TaxId:70601] [361003] (2 PDB entries)
1. Domains for 6a34:
  1. Domain d6a34a_: 6a34 A: [361067]
    automated match to d1t9ka_
    complexed with hez
  2. Domain d6a34b_: 6a34 B: [361004]
    automated match to d1t9ka_
    complexed with hez
2. Domains for 6a35:
  1. Domain d6a35a_: 6a35 A: [361032]
    automated match to d1t9ka_
  2. Domain d6a35b_: 6a35 B: [361097]
    automated match to d1t9ka_
  3. Domain d6a35c_: 6a35 C: [361061]
    automated match to d1t9ka_
  4. Domain d6a35d_: 6a35 D: [361075]
    automated match to d1t9ka_
Rhodococcus jostii [TaxId:101510] [420006] (3 PDB entries)
1. Domain for 6co6:
  - Domain d6co6b_: 6co6 B: [415772]
    automated match to d6conb_
    complexed with gol, so4
2. Domain for 6co9:
  - Domain d6co9b_: 6co9 B: [415773]
    automated match to d6conb_
    complexed with f8g, so4
3. Domain for 6coj:
  - Domain d6cojb_: 6coj B: [415774]
    automated match to d6conb_
    complexed with f8g, so4
Vibrio fischeri [TaxId:312309] [189167] (1 PDB entry)
- Domain for 3kv1:
  - Domain d3kv1a_: 3kv1 A: [179732]
    automated match to d3efba1
    complexed with gol

More info for Protein automated matches from c.124.1.0: automated matches

Timeline for Protein automated matches from c.124.1.0: automated matches:

Protein automated matches from c.124.1.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from c.124.1.0: automated matches appears in SCOPe 2.07