Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1473060Class a: All alpha proteins [46456] (285 folds)
  3. 1496989Fold a.93: Heme-dependent peroxidases [48112] (1 superfamily)
    multihelical; consists of two all-alpha domains
  4. 1496990Superfamily a.93.1: Heme-dependent peroxidases [48113] (4 families) (S)
  5. 1497575Family a.93.1.0: automated matches [191605] (1 protein)
    not a true family
  6. 1497576Protein automated matches [191104] (9 species)
    not a true protein

Species:

  1. 1497577Haloarcula marismortui [TaxId:272569] [226809] (7 PDB entries)
    1. Domains for 3uw8:
      1. 1497598Domain d3uw8a1: 3uw8 A:18-423 [217545]
        Other proteins in same PDB: d3uw8b1, d3uw8b2
        automated match to d1ub2a1
        complexed with hem
      2. 1497599Domain d3uw8a2: 3uw8 A:424-731 [217546]
        Other proteins in same PDB: d3uw8b1, d3uw8b2
        automated match to d1ub2a2
        complexed with hem
    2. Domains for 3vlh:
      1. 1497586Domain d3vlha1: 3vlh A:18-423 [217914]
        automated match to d1ub2a1
        complexed with hem
      2. 1497587Domain d3vlha2: 3vlh A:424-731 [217915]
        automated match to d1ub2a2
        complexed with hem
      3. 1497588Domain d3vlhb1: 3vlh B:18-423 [217916]
        automated match to d1ub2a1
        complexed with hem
      4. 1497589Domain d3vlhb2: 3vlh B:424-731 [217917]
        automated match to d1ub2a2
        complexed with hem
    3. Domains for 3vli:
      1. 1497582Domain d3vlia1: 3vli A:18-423 [217918]
        automated match to d1ub2a1
        complexed with cyn, hem
      2. 1497583Domain d3vlia2: 3vli A:424-731 [217919]
        automated match to d1ub2a2
        complexed with cyn, hem
      3. 1497584Domain d3vlib1: 3vli B:18-423 [217920]
        automated match to d1ub2a1
        complexed with cyn, hem
      4. 1497585Domain d3vlib2: 3vli B:424-731 [217921]
        automated match to d1ub2a2
        complexed with cyn, hem
    4. Domains for 3vlj:
      1. 1497578Domain d3vlja1: 3vlj A:18-423 [217922]
        automated match to d1ub2a1
        complexed with cyn, ddj, hem
      2. 1497579Domain d3vlja2: 3vlj A:424-731 [217923]
        automated match to d1ub2a2
        complexed with cyn, ddj, hem
      3. 1497580Domain d3vljb1: 3vlj B:18-423 [217924]
        automated match to d1ub2a1
        complexed with cyn, ddj, hem
      4. 1497581Domain d3vljb2: 3vlj B:424-731 [217925]
        automated match to d1ub2a2
        complexed with cyn, ddj, hem
    5. Domains for 3vlk:
      1. 1497590Domain d3vlka1: 3vlk A:18-423 [217926]
        automated match to d1ub2a1
        complexed with hem
      2. 1497591Domain d3vlka2: 3vlk A:424-731 [217927]
        automated match to d1ub2a2
        complexed with hem
      3. 1497592Domain d3vlkb1: 3vlk B:18-423 [217928]
        automated match to d1ub2a1
        complexed with hem
      4. 1497593Domain d3vlkb2: 3vlk B:424-731 [217929]
        automated match to d1ub2a2
        complexed with hem
    6. Domains for 3vll:
      1. 1497594Domain d3vlla1: 3vll A:18-423 [217930]
        automated match to d1ub2a1
        complexed with hem, sha
      2. 1497595Domain d3vlla2: 3vll A:424-731 [217931]
        automated match to d1ub2a2
        complexed with hem, sha
      3. 1497596Domain d3vllb1: 3vll B:18-423 [217932]
        automated match to d1ub2a1
        complexed with hem, sha
      4. 1497597Domain d3vllb2: 3vll B:424-731 [217933]
        automated match to d1ub2a2
        complexed with hem, sha
    7. Domains for 3vlm:
      1. 1497600Domain d3vlma1: 3vlm A:29-423 [217934]
        automated match to d1ub2a1
        complexed with hem
      2. 1497601Domain d3vlma2: 3vlm A:424-728 [217935]
        automated match to d1ub2a2
        complexed with hem
      3. 1497602Domain d3vlmb1: 3vlm B:29-423 [217936]
        automated match to d1ub2a1
        complexed with hem
      4. 1497603Domain d3vlmb2: 3vlm B:424-728 [217937]
        automated match to d1ub2a2
        complexed with hem
  2. 1497604Magnaporthe oryzae [TaxId:242507] [226424] (1 PDB entry)
  3. 1497609Mycobacterium tuberculosis [TaxId:1773] [254876] (2 PDB entries)
    1. Domains for 2cca:
      1. 1497614Domain d2ccaa1: 2cca A:26-432 [130222]
        automated match to d4c50a1
        complexed with hem; mutant
      2. 1497615Domain d2ccaa2: 2cca A:433-740 [130223]
        automated match to d4c50a2
        complexed with hem; mutant
      3. 1497616Domain d2ccab1: 2cca B:26-432 [130224]
        automated match to d4c50a1
        complexed with hem; mutant
      4. 1497617Domain d2ccab2: 2cca B:433-740 [130225]
        automated match to d4c50a2
        complexed with hem; mutant
    2. Domains for 2ccd:
      1. 1497610Domain d2ccda1: 2ccd A:26-432 [130228]
        automated match to d4c50a1
        complexed with hem; mutant
      2. 1497611Domain d2ccda2: 2ccd A:433-740 [130229]
        automated match to d4c50a2
        complexed with hem; mutant
      3. 1497612Domain d2ccdb1: 2ccd B:26-432 [130230]
        automated match to d4c50a1
        complexed with hem; mutant
      4. 1497613Domain d2ccdb2: 2ccd B:433-740 [130231]
        automated match to d4c50a2
        complexed with hem; mutant
  4. 1497618Mycobacterium tuberculosis [TaxId:83332] [228914] (2 PDB entries)
    1. Domains for 4c50:
      1. 1497623Domain d4c50a1: 4c50 A:25-432 [228915]
        automated match to d3ut2a1
        complexed with act, glc, hem; mutant
      2. 1497624Domain d4c50a2: 4c50 A:433-740 [228916]
        automated match to d3ut2a2
        complexed with act, glc, hem; mutant
      3. 1497625Domain d4c50b1: 4c50 B:25-432 [234290]
        automated match to d4c50a1
        complexed with act, glc, hem; mutant
      4. 1497626Domain d4c50b2: 4c50 B:433-740 [234291]
        automated match to d4c50a2
        complexed with act, glc, hem; mutant
    2. Domains for 4c51:
      1. 1497619Domain d4c51a1: 4c51 A:24-432 [251339]
        automated match to d4c50a1
        complexed with glc, hem; mutant
      2. 1497620Domain d4c51a2: 4c51 A:433-740 [251340]
        automated match to d4c50a2
        complexed with glc, hem; mutant
      3. 1497621Domain d4c51b1: 4c51 B:24-432 [251341]
        automated match to d4c50a1
        complexed with glc, hem; mutant
      4. 1497622Domain d4c51b2: 4c51 B:433-740 [251342]
        automated match to d4c50a2
        complexed with glc, hem; mutant
  5. 1497627Oyster mushroom (Pleurotus ostreatus) [TaxId:5322] [235966] (11 PDB entries)
    1. Domain for 4blk:
    2. Domain for 4bll:
    3. Domain for 4bln:
    4. Domain for 4blx:
    5. Domain for 4bly:
    6. Domains for 4blz:
      1. 1497637Domain d4blza_: 4blz A: [235973]
        automated match to d2vkaa_
        complexed with ca, hem
      2. 1497638Domain d4blzb_: 4blz B: [240029]
        automated match to d4blka_
        complexed with ca, hem
    7. Domain for 4bm0:
    8. Domains for 4bm1:
      1. 1497630Domain d4bm1a_: 4bm1 A: [235967]
        automated match to d3q3ua_
        complexed with ca, cit, hem, so4
      2. 1497631Domain d4bm1b_: 4bm1 B: [235969]
        automated match to d3q3ua_
        complexed with ca, cit, hem, so4
    9. Domain for 4bm2:
    10. Domain for 4bm3:
    11. Domain for 4bm4:
  6. 1497641Pleurotus eryngii [TaxId:5323] [226503] (14 PDB entries)
    1. Domain for 2boq:
    2. Domain for 2vka:
    3. Domain for 2w23:
    4. Domains for 3fjw:
      1. 1497655Domain d3fjwa_: 3fjw A: [232165]
        automated match to d4fcna_
        complexed with ca, hem, man, mn, nag
      2. 1497656Domain d3fjwb_: 3fjw B: [232166]
        automated match to d4fcna_
        complexed with ca, hem, man, mn, nag
    5. Domain for 3fkg:
    6. Domain for 3fm1:
    7. Domain for 3fm4:
    8. Domain for 3fm6:
    9. Domain for 3fmu:
    10. Domain for 4fcn:
    11. Domain for 4fcs:
    12. Domain for 4fdq:
    13. Domain for 4fef:
    14. Domain for 4g05:
  7. 1497657Roystonea regia [TaxId:145709] [189129] (1 PDB entry)
  8. 1497659Synechococcus elongatus [TaxId:1140] [237745] (1 PDB entry)
  9. 1497662Trametes cervina [TaxId:295351] [189654] (1 PDB entry)

More info for Protein automated matches from a.93.1.0: automated matches

Timeline for Protein automated matches from a.93.1.0: automated matches: