SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class a: All alpha proteins [46456] (290 folds)
Fold a.6: Putative DNA-binding domain [46954] (1 superfamily)
core: 3 helices; architecture is similar to that of the "winged helix" fold but topology is different
Superfamily a.6.1: Putative DNA-binding domain [46955] (8 families)
Family a.6.1.0: automated matches [191604] (1 protein)
not a true family
Protein automated matches [191102] (6 species)
not a true protein

Species:

Bacillus megaterium [TaxId:1404] [275234] (2 PDB entries)
1. Domains for 4ua1:
  1. Domain d4ua1a_: 4ua1 A: [275238]
    automated match to d1q05b_
    protein/DNA complex; complexed with hg
  2. Domain d4ua1b_: 4ua1 B: [275239]
    automated match to d1q05b_
    protein/DNA complex; complexed with hg
2. Domains for 4ua2:
  1. Domain d4ua2a_: 4ua2 A: [275235]
    automated match to d1q05b_
  2. Domain d4ua2b_: 4ua2 B: [275236]
    automated match to d1q05b_
  3. Domain d4ua2c_: 4ua2 C: [275242]
    automated match to d1q05b_
  4. Domain d4ua2d_: 4ua2 D: [275237]
    automated match to d1q05b_
  5. Domain d4ua2e_: 4ua2 E: [275241]
    automated match to d1q05b_
  6. Domain d4ua2f_: 4ua2 F: [275240]
    automated match to d1q05b_
  7. Domain d4ua2g_: 4ua2 G: [275243]
    automated match to d1q05b_
  8. Domain d4ua2h_: 4ua2 H: [275244]
    automated match to d1q05b_
Cupriavidus metallidurans [TaxId:266264] [327561] (1 PDB entry)
- Domains for 5gpe:
  1. Domain d5gpea_: 5gpe A: [327562]
    automated match to d1q06a_
    complexed with pb
  2. Domain d5gpeb_: 5gpe B: [327633]
    automated match to d1q06a_
    complexed with pb
  3. Domain d5gpec_: 5gpe C: [327669]
    automated match to d1q06a_
    complexed with pb
  4. Domain d5gped_: 5gpe D: [327608]
    automated match to d1q06a_
    complexed with pb
  5. Domain d5gpee_: 5gpe E: [327646]
    automated match to d1q06a_
    complexed with pb
  6. Domain d5gpef_: 5gpe F: [327611]
    automated match to d1q06a_
    complexed with pb
  7. Domain d5gpeg_: 5gpe G: [327616]
    automated match to d1q06a_
    complexed with pb
  8. Domain d5gpeh_: 5gpe H: [327570]
    automated match to d1q06a_
    complexed with pb
Escherichia coli K-12 [TaxId:83333] [255728] (1 PDB entry)
- Domain for 2zhg:
  - Domain d2zhga_: 2zhg A: [244924]
    automated match to d1q05b_
    protein/DNA complex; complexed with dtt, fes, gol
Pseudomonas aeruginosa [TaxId:287] [322153] (1 PDB entry)
- Domains for 5crl:
  1. Domain d5crla_: 5crl A: [322158]
    automated match to d1q05b_
    complexed with hg
  2. Domain d5crlb_: 5crl B: [322154]
    automated match to d1q05b_
    complexed with hg
Pseudomonas putida [TaxId:303] [374605] (2 PDB entries)
1. Domain for 6jgf:
  - Domain d6jgfa_: 6jgf A: [374783]
    automated match to d5crlb_
    complexed with po4
2. Domains for 6jgv:
  1. Domain d6jgva_: 6jgv A: [374606]
    automated match to d5crlb_
  2. Domain d6jgvb_: 6jgv B: [374609]
    automated match to d5crlb_
Streptomyces lividans [TaxId:1916] [189122] (1 PDB entry)
- Domain for 2vz4:
  - Domain d2vz4a_: 2vz4 A: [168956]
    automated match to d1r8da_

More info for Protein automated matches from a.6.1.0: automated matches

Timeline for Protein automated matches from a.6.1.0: automated matches:

Protein automated matches from a.6.1.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from a.6.1.0: automated matches appears in SCOPe 2.07