Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2516578Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 2518280Superfamily d.58.6: Nucleoside diphosphate kinase, NDK [54919] (2 families) (S)
  5. 2518815Family d.58.6.0: automated matches [191597] (1 protein)
    not a true family
  6. 2518816Protein automated matches [191087] (15 species)
    not a true protein

Species:

  1. 2518817Acinetobacter baumannii [TaxId:470] [341391] (1 PDB entry)
  2. 2518826Acinetobacter baumannii [TaxId:509170] [273929] (2 PDB entries)
    1. Domains for 4s0m:
      1. 2518828Domain d4s0ma_: 4s0m A: [309635]
        automated match to d4w98a_
        complexed with mg
      2. 2518829Domain d4s0mb_: 4s0m B: [309636]
        automated match to d4w98a_
        complexed with mg
      3. 2518830Domain d4s0mc_: 4s0m C: [309637]
        automated match to d4w98a_
        complexed with mg
      4. 2518831Domain d4s0md_: 4s0m D: [309638]
        automated match to d4w98a_
        complexed with mg
      5. 2518832Domain d4s0mf_: 4s0m F: [309639]
        automated match to d4w98a_
        complexed with mg
      6. 2518833Domain d4s0mg_: 4s0m G: [309640]
        automated match to d4w98a_
        complexed with mg
      7. 2518834Domain d4s0mh_: 4s0m H: [309641]
        automated match to d4w98a_
        complexed with mg
      8. 2518835Domain d4s0mi_: 4s0m I: [309642]
        automated match to d4w98a_
        complexed with mg
    2. Domain for 4w98:
  3. 2518836Acinetobacter baumannii [TaxId:575584] [340773] (1 PDB entry)
  4. 2518841Aquifex aeolicus [TaxId:63363] [193801] (5 PDB entries)
    1. Domain for 3zto:
    2. Domains for 3ztp:
      1. 2518842Domain d3ztpa_: 3ztp A: [218482]
        automated match to d3ztoa_
        complexed with gol, so4
      2. 2518843Domain d3ztpc_: 3ztp C: [218483]
        automated match to d3ztoa_
        complexed with gol, so4
    3. Domains for 3ztq:
      1. 2518845Domain d3ztqa_: 3ztq A: [218484]
        automated match to d3ztoa_
      2. 2518846Domain d3ztqb_: 3ztq B: [218485]
        automated match to d3ztoa_
      3. 2518847Domain d3ztqc_: 3ztq C: [218486]
        automated match to d3ztoa_
      4. 2518848Domain d3ztqd_: 3ztq D: [218487]
        automated match to d3ztoa_
      5. 2518849Domain d3ztqe_: 3ztq E: [218488]
        automated match to d3ztoa_
      6. 2518850Domain d3ztqf_: 3ztq F: [218489]
        automated match to d3ztoa_
      7. 2518851Domain d3ztqg_: 3ztq G: [218490]
        automated match to d3ztoa_
      8. 2518852Domain d3ztqh_: 3ztq H: [218491]
        automated match to d3ztoa_
    4. Domains for 3ztr:
      1. 2518853Domain d3ztra_: 3ztr A: [218492]
        automated match to d3ztoa_
      2. 2518854Domain d3ztrb_: 3ztr B: [218493]
        automated match to d3ztoa_
      3. 2518855Domain d3ztrc_: 3ztr C: [218494]
        automated match to d3ztoa_
      4. 2518856Domain d3ztrd_: 3ztr D: [218495]
        automated match to d3ztoa_
      5. 2518857Domain d3ztre_: 3ztr E: [218496]
        automated match to d3ztoa_
      6. 2518858Domain d3ztrf_: 3ztr F: [218497]
        automated match to d3ztoa_
      7. 2518859Domain d3ztrg_: 3ztr G: [218498]
        automated match to d3ztoa_
      8. 2518860Domain d3ztrh_: 3ztr H: [218499]
        automated match to d3ztoa_
      9. 2518861Domain d3ztri_: 3ztr I: [218500]
        automated match to d3ztoa_
      10. 2518862Domain d3ztrj_: 3ztr J: [218501]
        automated match to d3ztoa_
      11. 2518863Domain d3ztrk_: 3ztr K: [218502]
        automated match to d3ztoa_
      12. 2518864Domain d3ztrl_: 3ztr L: [218503]
        automated match to d3ztoa_
    5. Domains for 3zts:
      1. 2518865Domain d3ztsa_: 3zts A: [218504]
        automated match to d3ztoa_
      2. 2518866Domain d3ztsb_: 3zts B: [218505]
        automated match to d3ztoa_
      3. 2518867Domain d3ztsc_: 3zts C: [218506]
        automated match to d3ztoa_
      4. 2518868Domain d3ztsd_: 3zts D: [218507]
        automated match to d3ztoa_
      5. 2518869Domain d3ztse_: 3zts E: [218508]
        automated match to d3ztoa_
      6. 2518870Domain d3ztsf_: 3zts F: [218509]
        automated match to d3ztoa_
      7. 2518871Domain d3ztsg_: 3zts G: [218510]
        automated match to d3ztoa_
      8. 2518872Domain d3ztsh_: 3zts H: [218511]
        automated match to d3ztoa_
      9. 2518873Domain d3ztsi_: 3zts I: [218512]
        automated match to d3ztoa_
      10. 2518874Domain d3ztsj_: 3zts J: [218513]
        automated match to d3ztoa_
      11. 2518875Domain d3ztsk_: 3zts K: [218514]
        automated match to d3ztoa_
      12. 2518876Domain d3ztsl_: 3zts L: [218515]
        automated match to d3ztoa_
  5. 2518877Babesia bovis [TaxId:484906] [189049] (1 PDB entry)
  6. 2518881Fungus (Encephalitozoon cuniculi) [TaxId:6035] [189331] (1 PDB entry)
  7. 2518884Helicobacter pylori [TaxId:210] [339055] (1 PDB entry)
  8. 2518892Lyme disease spirochete (Borrelia burgdorferi) [TaxId:139] [226296] (2 PDB entries)
    1. Domains for 4di6:
      1. 2518899Domain d4di6a1: 4di6 A:3-169 [219773]
        Other proteins in same PDB: d4di6a2, d4di6b2, d4di6d2, d4di6e2, d4di6f2
        automated match to d1xqia1
      2. 2518900Domain d4di6b1: 4di6 B:3-169 [219774]
        Other proteins in same PDB: d4di6a2, d4di6b2, d4di6d2, d4di6e2, d4di6f2
        automated match to d1xqia1
      3. 2518901Domain d4di6c_: 4di6 C: [219775]
        Other proteins in same PDB: d4di6a2, d4di6b2, d4di6d2, d4di6e2, d4di6f2
        automated match to d1xqia1
      4. 2518902Domain d4di6d1: 4di6 D:3-169 [219776]
        Other proteins in same PDB: d4di6a2, d4di6b2, d4di6d2, d4di6e2, d4di6f2
        automated match to d1xqia1
      5. 2518903Domain d4di6e1: 4di6 E:3-169 [219777]
        Other proteins in same PDB: d4di6a2, d4di6b2, d4di6d2, d4di6e2, d4di6f2
        automated match to d1xqia1
      6. 2518904Domain d4di6f1: 4di6 F:3-169 [219778]
        Other proteins in same PDB: d4di6a2, d4di6b2, d4di6d2, d4di6e2, d4di6f2
        automated match to d1xqia1
    2. Domains for 4dz6:
      1. 2518893Domain d4dz6a1: 4dz6 A:3-169 [234345]
        Other proteins in same PDB: d4dz6a2, d4dz6b2, d4dz6c2, d4dz6d2, d4dz6e2, d4dz6f2
        automated match to d4di6d_
        complexed with adp, edo, vn4, vo4
      2. 2518894Domain d4dz6b1: 4dz6 B:3-169 [220110]
        Other proteins in same PDB: d4dz6a2, d4dz6b2, d4dz6c2, d4dz6d2, d4dz6e2, d4dz6f2
        automated match to d1xqia1
        complexed with adp, edo, vn4, vo4
      3. 2518895Domain d4dz6c1: 4dz6 C:3-169 [220111]
        Other proteins in same PDB: d4dz6a2, d4dz6b2, d4dz6c2, d4dz6d2, d4dz6e2, d4dz6f2
        automated match to d1xqia1
        complexed with adp, edo, vn4, vo4
      4. 2518896Domain d4dz6d1: 4dz6 D:3-169 [220112]
        Other proteins in same PDB: d4dz6a2, d4dz6b2, d4dz6c2, d4dz6d2, d4dz6e2, d4dz6f2
        automated match to d1xqia1
        complexed with adp, edo, vn4, vo4
      5. 2518897Domain d4dz6e1: 4dz6 E:3-169 [220113]
        Other proteins in same PDB: d4dz6a2, d4dz6b2, d4dz6c2, d4dz6d2, d4dz6e2, d4dz6f2
        automated match to d1xqia1
        complexed with adp, edo, vn4, vo4
      6. 2518898Domain d4dz6f1: 4dz6 F:3-169 [220114]
        Other proteins in same PDB: d4dz6a2, d4dz6b2, d4dz6c2, d4dz6d2, d4dz6e2, d4dz6f2
        automated match to d1xqia1
        complexed with adp, edo, vn4, vo4
  9. 2518905Maize (Zea mays) [TaxId:4577] [271285] (1 PDB entry)
  10. 2518918Mycobacterium tuberculosis [TaxId:1773] [234075] (3 PDB entries)
    1. Domain for 4anc:
    2. Domains for 4and:
      1. 2518926Domain d4anda_: 4and A: [234077]
        automated match to d3fc9a_
        mutant
      2. 2518927Domain d4andb_: 4and B: [239973]
        automated match to d4anca_
        mutant
    3. Domains for 4ane:
      1. 2518919Domain d4anea_: 4ane A: [234079]
        automated match to d3fc9a_
        complexed with cit; mutant
      2. 2518920Domain d4aneb_: 4ane B: [234078]
        automated match to d3fc9a_
        complexed with cit; mutant
      3. 2518921Domain d4anec_: 4ane C: [234081]
        automated match to d3fc9a_
        complexed with cit; mutant
      4. 2518922Domain d4aned_: 4ane D: [234080]
        automated match to d3fc9a_
        complexed with cit; mutant
      5. 2518923Domain d4anee_: 4ane E: [234082]
        automated match to d3fc9a_
        complexed with cit; mutant
      6. 2518924Domain d4anef_: 4ane F: [234083]
        automated match to d3fc9a_
        complexed with cit; mutant
  11. 2518928Naegleria fowleri [TaxId:5763] [329036] (1 PDB entry)
  12. 2518935Pacific white shrimp (Litopenaeus vannamei) [TaxId:6689] [259554] (3 PDB entries)
    1. Domains for 4uof:
      1. 2518939Domain d4uofa_: 4uof A: [267454]
        automated match to d4uoha_
        complexed with dat, mg
      2. 2518940Domain d4uofb_: 4uof B: [267455]
        automated match to d4uoha_
        complexed with dat, mg
      3. 2518941Domain d4uofc_: 4uof C: [267456]
        automated match to d4uoha_
        complexed with dat, mg
    2. Domains for 4uog:
      1. 2518942Domain d4uoga_: 4uog A: [267457]
        automated match to d4uoha_
        complexed with mg, yyy
      2. 2518943Domain d4uogb_: 4uog B: [267458]
        automated match to d4uoha_
        complexed with mg, yyy
      3. 2518944Domain d4uogc_: 4uog C: [267459]
        automated match to d4uoha_
        complexed with mg, yyy
    3. Domains for 4uoh:
      1. 2518936Domain d4uoha_: 4uoh A: [259555]
        automated match to d4f36e_
        complexed with adp, mg
      2. 2518937Domain d4uohb_: 4uoh B: [263987]
        automated match to d4uoha_
        complexed with adp, mg
      3. 2518938Domain d4uohc_: 4uoh C: [259728]
        automated match to d4f36e_
        complexed with adp, mg
  13. 2518945Trypanosoma brucei [TaxId:999953] [195043] (4 PDB entries)
    1. Domains for 4f36:
      1. 2518955Domain d4f36a_: 4f36 A: [195366]
        Other proteins in same PDB: d4f36e2
        automated match to d3prvb_
        complexed with scn
      2. 2518956Domain d4f36b_: 4f36 B: [201984]
        Other proteins in same PDB: d4f36e2
        automated match to d4f4ac_
        complexed with scn
      3. 2518957Domain d4f36c_: 4f36 C: [201985]
        Other proteins in same PDB: d4f36e2
        automated match to d4f36e_
        complexed with scn
      4. 2518958Domain d4f36d_: 4f36 D: [201986]
        Other proteins in same PDB: d4f36e2
        automated match to d4f4ac_
        complexed with scn
      5. 2518959Domain d4f36e1: 4f36 E:1-153 [195365]
        Other proteins in same PDB: d4f36e2
        automated match to d3prvb_
        complexed with scn
      6. 2518960Domain d4f36f_: 4f36 F: [201987]
        Other proteins in same PDB: d4f36e2
        automated match to d4f4aa_
        complexed with scn
    2. Domains for 4f4a:
      1. 2518952Domain d4f4aa_: 4f4a A: [195275]
        automated match to d3prvb_
        complexed with mg, udp
      2. 2518953Domain d4f4ab_: 4f4a B: [195274]
        automated match to d3prvb_
        complexed with mg, udp
      3. 2518954Domain d4f4ac_: 4f4a C: [195273]
        automated match to d3prvb_
        complexed with mg, udp
    3. Domains for 4fkx:
      1. 2518946Domain d4fkxa_: 4fkx A: [221261]
        automated match to d4fkyc_
        complexed with cdp, mg, mpd
      2. 2518947Domain d4fkxb_: 4fkx B: [221262]
        automated match to d4fkyc_
        complexed with cdp, mg, mpd
      3. 2518948Domain d4fkxc_: 4fkx C: [221263]
        automated match to d4fkyc_
        complexed with cdp, mg, mpd
    4. Domains for 4fky:
      1. 2518949Domain d4fkya_: 4fky A: [202042]
        automated match to d4fkyc_
        complexed with gdp, mg, mpd
      2. 2518950Domain d4fkyb_: 4fky B: [202043]
        automated match to d4fkyc_
        complexed with gdp, mg, mpd
      3. 2518951Domain d4fkyc_: 4fky C: [195044]
        automated match to d3prvb_
        complexed with gdp, mg, mpd
  14. 2518961Trypanosoma cruzi [TaxId:5693] [189957] (1 PDB entry)
  15. 3048300Vibrio cholerae [TaxId:579112] [348362] (1 PDB entry)

More info for Protein automated matches from d.58.6.0: automated matches

Timeline for Protein automated matches from d.58.6.0: automated matches: