Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2070014Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 2070786Superfamily b.82.2: Clavaminate synthase-like [51197] (16 families) (S)
    Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold
  5. 2071041Family b.82.2.10: AlkB-like [141628] (3 protein domains)
    automatically mapped to Pfam PF13532
  6. 2071057Protein automated matches [191077] (2 species)
    not a true protein

Species:

  1. 2071058Escherichia coli K-12 [TaxId:83333] [189001] (22 PDB entries)
    1. Domain for 3i2o:
    2. Domain for 3i3m:
    3. Domains for 3i3q:
      1. 2071060Domain d3i3qa_: 3i3q A: [178063]
        automated match to d2fd8a1
        protein/DNA complex; complexed with akg, mn
      2. 2071061Domain d3i3qb_: 3i3q B: [178064]
        automated match to d2fd8a1
        protein/DNA complex; complexed with akg, mn
    4. Domain for 3i49:
    5. Domains for 3khb:
      1. 2071082Domain d3khba_: 3khb A: [179368]
        automated match to d2fd8a1
        complexed with akg, co
      2. 2071083Domain d3khbb_: 3khb B: [179369]
        automated match to d2fd8a1
        complexed with akg, co
    6. Domains for 3khc:
      1. 2071080Domain d3khca_: 3khc A: [179370]
        automated match to d2fd8a1
        protein/DNA complex; complexed with akg, co
      2. 2071081Domain d3khcb_: 3khc B: [179371]
        automated match to d2fd8a1
        protein/DNA complex; complexed with akg, co
    7. Domain for 3o1m:
    8. Domain for 3o1o:
    9. Domain for 3o1p:
    10. Domain for 3o1r:
    11. Domain for 3o1s:
    12. Domain for 3o1t:
    13. Domain for 3o1u:
    14. Domain for 3o1v:
    15. Domain for 3t3y:
    16. Domain for 3t4h:
    17. Domain for 3t4v:
    18. Domain for 4jht:
    19. Domain for 4nid:
      • 2071071Domain d4nida_: 4nid A: [257161]
        automated match to d3khca_
        protein/DNA complex; protein/RNA complex; complexed with akg, mn
    20. Domain for 4nig:
      • 2071069Domain d4niga_: 4nig A: [257162]
        automated match to d3khca_
        protein/DNA complex; protein/RNA complex; complexed with akg, mn; mutant
    21. Domain for 4nih:
      • 2071062Domain d4niha_: 4nih A: [257163]
        automated match to d3khca_
        protein/DNA complex; protein/RNA complex; complexed with akg, gol, mn; mutant
    22. Domain for 4nii:
      • 2071073Domain d4niia_: 4nii A: [257164]
        automated match to d3khca_
        protein/DNA complex; protein/RNA complex; complexed with akg, mn; mutant
  2. 2269848Escherichia coli [TaxId:562] [313153] (1 PDB entry)

More info for Protein automated matches from b.82.2.10: AlkB-like

Timeline for Protein automated matches from b.82.2.10: AlkB-like: