SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.92: Chelatase-like [53799] (3 superfamilies)
duplication: tandem repeat of two domains; 3 layers (a/b/a); parallel beta-sheet of 4 strands, order 2134
Superfamily c.92.2: 'Helical backbone' metal receptor [53807] (5 families)
contains a long alpha helical insertion in the interdomain linker
Family c.92.2.2: TroA-like [53811] (6 proteins)
Protein automated matches [191053] (5 species)
not a true protein

Species:

Escherichia coli [TaxId:562] [330411] (2 PDB entries)

Domains for 5m2q:
1. Domain d5m2qa_: 5m2q A: [330412]
  Other proteins in same PDB: d5m2qb2
  automated match to d1n2za_
  complexed with cby, cyn, gol; mutant
2. Domain d5m2qb1: 5m2q B:22-265 [330413]
  Other proteins in same PDB: d5m2qb2
  automated match to d1n2za_
  complexed with cby, cyn, gol; mutant

Domains for 5ovw:

Domain d5ovwa_: 5ovw A: [341310]
Other proteins in same PDB: d5ovwg1, d5ovwg2, d5ovwh1, d5ovwh2, d5ovwi1, d5ovwi2, d5ovwj1, d5ovwj2, d5ovwk1, d5ovwk2, d5ovwl1, d5ovwl2
automated match to d1n2za_
complexed with gol

Domain d5ovwb_: 5ovw B: [341309]
Other proteins in same PDB: d5ovwg1, d5ovwg2, d5ovwh1, d5ovwh2, d5ovwi1, d5ovwi2, d5ovwj1, d5ovwj2, d5ovwk1, d5ovwk2, d5ovwl1, d5ovwl2
automated match to d1n2za_
complexed with gol

Domain d5ovwc_: 5ovw C: [341378]
Other proteins in same PDB: d5ovwg1, d5ovwg2, d5ovwh1, d5ovwh2, d5ovwi1, d5ovwi2, d5ovwj1, d5ovwj2, d5ovwk1, d5ovwk2, d5ovwl1, d5ovwl2
automated match to d1n2za_
complexed with gol

Domain d5ovwd_: 5ovw D: [341371]
Other proteins in same PDB: d5ovwg1, d5ovwg2, d5ovwh1, d5ovwh2, d5ovwi1, d5ovwi2, d5ovwj1, d5ovwj2, d5ovwk1, d5ovwk2, d5ovwl1, d5ovwl2
automated match to d1n2za_
complexed with gol

Domain d5ovwe_: 5ovw E: [341334]
Other proteins in same PDB: d5ovwg1, d5ovwg2, d5ovwh1, d5ovwh2, d5ovwi1, d5ovwi2, d5ovwj1, d5ovwj2, d5ovwk1, d5ovwk2, d5ovwl1, d5ovwl2
automated match to d1n2za_
complexed with gol

Domain d5ovwf_: 5ovw F: [341329]
Other proteins in same PDB: d5ovwg1, d5ovwg2, d5ovwh1, d5ovwh2, d5ovwi1, d5ovwi2, d5ovwj1, d5ovwj2, d5ovwk1, d5ovwk2, d5ovwl1, d5ovwl2
automated match to d1n2za_
complexed with gol

Escherichia coli [TaxId:83333] [329504] (3 PDB entries)
1. Domains for 5m29:
  1. Domain d5m29a_: 5m29 A: [329570]
    automated match to d1n2za_
    complexed with cby, cyn, gol
  2. Domain d5m29b_: 5m29 B: [329505]
    automated match to d1n2za_
    complexed with cby, cyn, gol
2. Domains for 5m34:
  1. Domain d5m34a_: 5m34 A: [330430]
    Other proteins in same PDB: d5m34b2
    automated match to d1n2za_
    complexed with cby, cyn, gol; mutant
  2. Domain d5m34b1: 5m34 B:22-265 [330512]
    Other proteins in same PDB: d5m34b2
    automated match to d1n2za_
    complexed with cby, cyn, gol; mutant
3. Domains for 5m3b:
  1. Domain d5m3ba_: 5m3b A: [330426]
    Other proteins in same PDB: d5m3bb2
    automated match to d1n2za_
    complexed with cby, cyn, gol; mutant
  2. Domain d5m3bb1: 5m3b B:22-266 [330389]
    Other proteins in same PDB: d5m3bb2
    automated match to d1n2za_
    complexed with cby, cyn, gol; mutant
Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [189842] (7 PDB entries)
1. Domains for 3zk7:
  1. Domain d3zk7a_: 3zk7 A: [228905]
    automated match to d3ztta_
    complexed with trs
  2. Domain d3zk7b_: 3zk7 B: [235910]
    automated match to d3zk7a_
    complexed with trs
2. Domains for 3zk8:
  1. Domain d3zk8a_: 3zk8 A: [228904]
    automated match to d3ztta_
    complexed with trs
  2. Domain d3zk8b_: 3zk8 B: [235909]
    automated match to d3zk8a_
    complexed with trs
3. Domains for 3zk9:
  1. Domain d3zk9a_: 3zk9 A: [228906]
    automated match to d3ztta_
    complexed with trs
  2. Domain d3zk9b_: 3zk9 B: [228907]
    automated match to d3ztta_
    complexed with trs
4. Domains for 3zka:
  1. Domain d3zkaa_: 3zka A: [235912]
    automated match to d3zk9a_
    complexed with mn, trs
  2. Domain d3zkab_: 3zka B: [235911]
    automated match to d3zk9a_
    complexed with mn, trs
5. Domains for 3ztt:
  1. Domain d3ztta_: 3ztt A: [186566]
    automated match to d1psza_
    complexed with mn
  2. Domain d3zttb_: 3ztt B: [186567]
    automated match to d1psza_
    complexed with mn
  3. Domain d3zttc_: 3ztt C: [186568]
    automated match to d1psza_
    complexed with mn
  4. Domain d3zttd_: 3ztt D: [186569]
    automated match to d1psza_
    complexed with mn
6. Domains for 4uto:
  1. Domain d4utoa_: 4uto A: [269937]
    automated match to d1psza_
    complexed with cd, trs
  2. Domain d4utob_: 4uto B: [269936]
    automated match to d1psza_
    complexed with cd, trs
7. Domains for 4utp:
  1. Domain d4utpa1: 4utp A:32-309 [264005]
    Other proteins in same PDB: d4utpa2, d4utpb2
    automated match to d1psza_
    complexed with cd
  2. Domain d4utpb1: 4utp B:32-309 [259043]
    Other proteins in same PDB: d4utpa2, d4utpb2
    automated match to d1psza_
    complexed with cd
Streptococcus pyogenes [TaxId:301447] [188912] (1 PDB entry)
- Domain for 3hh8:
  - Domain d3hh8a_: 3hh8 A: [177573]
    automated match to d1psza_
    complexed with fe
Synechocystis sp. [TaxId:1143] [225291] (2 PDB entries)
1. Domain for 2ov1:
  - Domain d2ov1a_: 2ov1 A: [205374]
    automated match to d1pq4a_
2. Domain for 2ov3:
  - Domain d2ov3a_: 2ov3 A: [205375]
    automated match to d1pq4a_
    complexed with zn; mutant

More info for Protein automated matches from c.92.2.2: TroA-like

Timeline for Protein automated matches from c.92.2.2: TroA-like:

Protein automated matches from c.92.2.2: TroA-like first appeared in SCOPe 2.01
Protein automated matches from c.92.2.2: TroA-like appears in SCOPe 2.07