Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class a: All alpha proteins [46456] (290 folds)
  3. Fold a.28: Acyl carrier protein-like [47335] (3 superfamilies)
    4 helices, bundle; helix 3 is shorter than others; up-and-down
  4. Superfamily a.28.1: ACP-like [47336] (4 families) (S)
  5. Family a.28.1.0: automated matches [191582] (1 protein)
    not a true family
  6. Protein automated matches [191038] (28 species)
    not a true protein

Species:

  1. Actinoplanes teichomyceticus [TaxId:1867] [268016] (2 PDB entries)
    1. Domain for 2mr7:
    2. Domain for 2mr8:
  2. Anaplasma phagocytophilum [TaxId:212042] [267793] (1 PDB entry)
  3. Bacillus subtilis [TaxId:1423] [256569] (3 PDB entries)
    1. Domain for 4bpf:
    2. Domains for 4bpg:
      1. Domain d4bpga1: 4bpg A:1-78 [256571]
        Other proteins in same PDB: d4bpga2, d4bpgb2
        automated match to d1hqba_
      2. Domain d4bpgb1: 4bpg B:1-78 [262532]
        Other proteins in same PDB: d4bpga2, d4bpgb2
        automated match to d4bpfa_
    3. Domain for 4bph:
  4. Brucella melitensis [TaxId:520466] [255402] (1 PDB entry)
  5. Enterococcus faecalis [TaxId:226185] [279836] (1 PDB entry)
  6. Escherichia coli [TaxId:316385] [392249] (1 PDB entry)
  7. Escherichia coli [TaxId:562] [366041] (1 PDB entry)
  8. Escherichia coli [TaxId:83333] [335816] (1 PDB entry)
  9. Helicobacter pylori [TaxId:210] [324772] (2 PDB entries)
    1. Domain for 4zjb:
    2. Domain for 6ihc:
  10. Helicobacter pylori [TaxId:570508] [327571] (2 PDB entries)
    1. Domains for 5h9g:
      1. Domain d5h9ga1: 5h9g A:1-76 [327574]
        Other proteins in same PDB: d5h9ga2, d5h9gb2
        automated match to d3gzmb_
      2. Domain d5h9gb1: 5h9g B:1-75 [327588]
        Other proteins in same PDB: d5h9ga2, d5h9gb2
        automated match to d3gzmb_
    2. Domains for 5h9h:
      1. Domain d5h9ha_: 5h9h A: [327632]
        automated match to d3gzmb_
      2. Domain d5h9hb_: 5h9h B: [327572]
        automated match to d3gzmb_
      3. Domain d5h9hc_: 5h9h C: [327573]
        automated match to d3gzmb_
  11. Human (Homo sapiens) [TaxId:9606] [255120] (5 PDB entries)
    1. Domain for 2dnw:
    2. Domain for 5ool:
    3. Domain for 5oom:
    4. Domain for 6odd:
    5. Domain for 7of0:
  12. Leishmania major [TaxId:5664] [259666] (3 PDB entries)
    1. Domain for 2m5r:
    2. Domains for 5zws:
      1. Domain d5zwsa1: 5zws A:3-80 [362573]
        Other proteins in same PDB: d5zwsa2, d5zwsb2
        automated match to d2lola_
      2. Domain d5zwsb1: 5zws B:3-80 [362594]
        Other proteins in same PDB: d5zwsa2, d5zwsb2
        automated match to d2lola_
    3. Domains for 5zwt:
      1. Domain d5zwta1: 5zwt A:3-80 [362619]
        Other proteins in same PDB: d5zwta2, d5zwtb2
        automated match to d2lola_
        mutant
      2. Domain d5zwtb1: 5zwt B:3-80 [362621]
        Other proteins in same PDB: d5zwta2, d5zwtb2
        automated match to d2lola_
        mutant
  13. Lyme disease spirochete (Borrelia burgdorferi) [TaxId:139] [255384] (1 PDB entry)
  14. Malaria parasite (Plasmodium falciparum) [TaxId:5833] [188862] (2 PDB entries)
    1. Domain for 3gzl:
    2. Domains for 3gzm:
      1. Domain d3gzma_: 3gzm A: [177112]
        automated match to d1acpa_
        complexed with bme, mli, pns
      2. Domain d3gzmb_: 3gzm B: [177113]
        automated match to d1acpa_
        complexed with bme, mli, pns
  15. Mouse (Mus musculus) [TaxId:10090] [394118] (4 PDB entries)
    1. Domains for 6zr2:
      1. Domain d6zr2t_: 6zr2 T: [394119]
        Other proteins in same PDB: d6zr2f1, d6zr2f2, d6zr2f3, d6zr2w_
        automated match to d2qnwa_
        complexed with 3pe, atp, cdl, ehz, fes, fmn, ndp, pc1, sf4, zn
      2. Domain d6zr2u_: 6zr2 U: [394124]
        Other proteins in same PDB: d6zr2f1, d6zr2f2, d6zr2f3, d6zr2w_
        automated match to d2qnwa_
        complexed with 3pe, atp, cdl, ehz, fes, fmn, ndp, pc1, sf4, zn
    2. Domains for 6ztq:
      1. Domain d6ztqt_: 6ztq T: [394158]
        Other proteins in same PDB: d6ztqf1, d6ztqf2, d6ztqf3, d6ztqw_
        automated match to d2qnwa_
        complexed with 3pe, atp, cdl, ehz, fes, fmn, hqh, ndp, pc1, sf4, zn
      2. Domain d6ztqu_: 6ztq U: [394225]
        Other proteins in same PDB: d6ztqf1, d6ztqf2, d6ztqf3, d6ztqw_
        automated match to d2qnwa_
        complexed with 3pe, atp, cdl, ehz, fes, fmn, hqh, ndp, pc1, sf4, zn
    3. Domains for 7ak5:
      1. Domain d7ak5t_: 7ak5 T: [398232]
        Other proteins in same PDB: d7ak5f1, d7ak5f2, d7ak5f3, d7ak5w_
        automated match to d2qnwa_
        complexed with 3pe, atp, cdl, ehz, fes, fmn, ndp, pc1, sf4, zn
      2. Domain d7ak5u_: 7ak5 U: [398572]
        Other proteins in same PDB: d7ak5f1, d7ak5f2, d7ak5f3, d7ak5w_
        automated match to d2qnwa_
        complexed with 3pe, atp, cdl, ehz, fes, fmn, ndp, pc1, sf4, zn
    4. Domains for 7b93:
      1. Domain d7b93t_: 7b93 T: [404436]
        Other proteins in same PDB: d7b93f1, d7b93f2, d7b93f3, d7b93w_
        automated match to d2qnwa_
        complexed with 3pe, atp, cdl, ehz, fes, fmn, ndp, pc1, sf4, t2q, zn
      2. Domain d7b93u_: 7b93 U: [404434]
        Other proteins in same PDB: d7b93f1, d7b93f2, d7b93f3, d7b93w_
        automated match to d2qnwa_
        complexed with 3pe, atp, cdl, ehz, fes, fmn, ndp, pc1, sf4, t2q, zn
  16. Mycobacterium tuberculosis [TaxId:83332] [255086] (1 PDB entry)
  17. Mycolicibacterium smegmatis [TaxId:246196] [384640] (4 PDB entries)
    1. Domain for 7bvc:
    2. Domains for 7bve:
      1. Domain d7bvec_: 7bve C: [384644]
        automated match to d2cnra_
        complexed with 95e, ca, pn7, po4
      2. Domain d7bved_: 7bve D: [384643]
        automated match to d2cnra_
        complexed with 95e, ca, pn7, po4
    3. Domain for 7bvf:
    4. Domain for 7bvg:
  18. Sheep (Ovis aries) [TaxId:9940] [393976] (17 PDB entries)
    1. Domain for 6zk9:
    2. Domain for 6zka:
    3. Domain for 6zkb:
    4. Domains for 6zkc:
      1. Domain d6zkcj_: 6zkc j: [394045]
        Other proteins in same PDB: d6zkc11, d6zkc12, d6zkc13, d6zkcg_
        automated match to d2qnwa_
        complexed with 3pe, amp, cdl, dcq, fes, fmn, k, myr, nai, ndp, pc1, sf4, zmp, zn
      2. Domain d6zkcx_: 6zkc X: [394050]
        Other proteins in same PDB: d6zkc11, d6zkc12, d6zkc13, d6zkcg_
        automated match to d2qnwa_
        complexed with 3pe, amp, cdl, dcq, fes, fmn, k, myr, nai, ndp, pc1, sf4, zmp, zn
    5. Domains for 6zkd:
      1. Domain d6zkdj_: 6zkd j: [394024]
        Other proteins in same PDB: d6zkd11, d6zkd12, d6zkd13, d6zkdg_
        automated match to d2qnwa_
        complexed with 3pe, amp, cdl, dcq, fes, fmn, k, myr, nai, ndp, pc1, sf4, zmp, zn
      2. Domain d6zkdx_: 6zkd X: [394043]
        Other proteins in same PDB: d6zkd11, d6zkd12, d6zkd13, d6zkdg_
        automated match to d2qnwa_
        complexed with 3pe, amp, cdl, dcq, fes, fmn, k, myr, nai, ndp, pc1, sf4, zmp, zn
    6. Domains for 6zke:
      1. Domain d6zkej_: 6zke j: [394048]
        Other proteins in same PDB: d6zke11, d6zke12, d6zke13, d6zkeg_
        automated match to d2qnwa_
        complexed with 3pe, amp, cdl, dcq, fes, fmn, k, myr, nai, ndp, pc1, sf4, zmp, zn
      2. Domain d6zkex_: 6zke X: [394061]
        Other proteins in same PDB: d6zke11, d6zke12, d6zke13, d6zkeg_
        automated match to d2qnwa_
        complexed with 3pe, amp, cdl, dcq, fes, fmn, k, myr, nai, ndp, pc1, sf4, zmp, zn
    7. Domains for 6zkf:
      1. Domain d6zkfj_: 6zkf j: [394009]
        Other proteins in same PDB: d6zkf11, d6zkf12, d6zkf13, d6zkfg_
        automated match to d2qnwa_
        complexed with 3pe, amp, cdl, dcq, fes, fmn, k, myr, nai, ndp, pc1, sf4, zmp, zn
      2. Domain d6zkfx_: 6zkf X: [394001]
        Other proteins in same PDB: d6zkf11, d6zkf12, d6zkf13, d6zkfg_
        automated match to d2qnwa_
        complexed with 3pe, amp, cdl, dcq, fes, fmn, k, myr, nai, ndp, pc1, sf4, zmp, zn
    8. Domains for 6zkh:
      1. Domain d6zkhj_: 6zkh j: [394071]
        Other proteins in same PDB: d6zkh11, d6zkh12, d6zkh13, d6zkhg_
        automated match to d2qnwa_
        complexed with 3pe, amp, cdl, dcq, fes, fmn, k, myr, nai, ndp, pc1, sf4, zmp, zn
      2. Domain d6zkhx_: 6zkh X: [394067]
        Other proteins in same PDB: d6zkh11, d6zkh12, d6zkh13, d6zkhg_
        automated match to d2qnwa_
        complexed with 3pe, amp, cdl, dcq, fes, fmn, k, myr, nai, ndp, pc1, sf4, zmp, zn
    9. Domains for 6zki:
      1. Domain d6zkij_: 6zki j: [394029]
        Other proteins in same PDB: d6zki11, d6zki12, d6zki13, d6zkig_
        automated match to d2qnwa_
        complexed with 3pe, amp, cdl, dcq, fes, fmn, k, myr, nai, ndp, pc1, sf4, zmp, zn
      2. Domain d6zkix_: 6zki X: [394065]
        Other proteins in same PDB: d6zki11, d6zki12, d6zki13, d6zkig_
        automated match to d2qnwa_
        complexed with 3pe, amp, cdl, dcq, fes, fmn, k, myr, nai, ndp, pc1, sf4, zmp, zn
    10. Domains for 6zkj:
      1. Domain d6zkjj_: 6zkj j: [394083]
        Other proteins in same PDB: d6zkj11, d6zkj12, d6zkj13, d6zkjg_
        automated match to d2qnwa_
        complexed with 3pe, amp, cdl, dcq, fes, fmn, k, myr, nai, ndp, pc1, sf4, zmp, zn
      2. Domain d6zkjx_: 6zkj X: [394102]
        Other proteins in same PDB: d6zkj11, d6zkj12, d6zkj13, d6zkjg_
        automated match to d2qnwa_
        complexed with 3pe, amp, cdl, dcq, fes, fmn, k, myr, nai, ndp, pc1, sf4, zmp, zn
    11. Domains for 6zkl:
      1. Domain d6zklj_: 6zkl j: [393992]
        Other proteins in same PDB: d6zkl11, d6zkl12, d6zkl13, d6zklg_
        automated match to d2qnwa_
        complexed with 3pe, 970, amp, cdl, fes, fmn, k, myr, nai, ndp, pc1, sf4, zmp, zn
      2. Domain d6zklx_: 6zkl X: [393977]
        Other proteins in same PDB: d6zkl11, d6zkl12, d6zkl13, d6zklg_
        automated match to d2qnwa_
        complexed with 3pe, 970, amp, cdl, fes, fmn, k, myr, nai, ndp, pc1, sf4, zmp, zn
    12. Domains for 6zkm:
      1. Domain d6zkmj_: 6zkm j: [394062]
        Other proteins in same PDB: d6zkm11, d6zkm12, d6zkm13, d6zkmg_
        automated match to d2qnwa_
        complexed with 3pe, 970, amp, cdl, fes, fmn, k, myr, nai, ndp, pc1, sf4, zmp, zn
      2. Domain d6zkmx_: 6zkm X: [394064]
        Other proteins in same PDB: d6zkm11, d6zkm12, d6zkm13, d6zkmg_
        automated match to d2qnwa_
        complexed with 3pe, 970, amp, cdl, fes, fmn, k, myr, nai, ndp, pc1, sf4, zmp, zn
    13. Domains for 6zkn:
      1. Domain d6zknj_: 6zkn j: [394044]
        Other proteins in same PDB: d6zkn11, d6zkn12, d6zkn13, d6zkng_
        automated match to d2qnwa_
        complexed with 3pe, 970, amp, cdl, fes, fmn, k, myr, nai, ndp, pc1, sf4, zmp, zn
      2. Domain d6zknx_: 6zkn X: [394057]
        Other proteins in same PDB: d6zkn11, d6zkn12, d6zkn13, d6zkng_
        automated match to d2qnwa_
        complexed with 3pe, 970, amp, cdl, fes, fmn, k, myr, nai, ndp, pc1, sf4, zmp, zn
    14. Domains for 6zks:
      1. Domain d6zksj_: 6zks j: [394074]
        Other proteins in same PDB: d6zks11, d6zks12, d6zks13, d6zksg_
        automated match to d2qnwa_
        complexed with 3pe, amp, cdl, fes, fmn, k, myr, ndp, pc1, sf4, zmp, zn
      2. Domain d6zksx_: 6zks X: [394070]
        Other proteins in same PDB: d6zks11, d6zks12, d6zks13, d6zksg_
        automated match to d2qnwa_
        complexed with 3pe, amp, cdl, fes, fmn, k, myr, ndp, pc1, sf4, zmp, zn
    15. Domains for 6zkt:
      1. Domain d6zktj_: 6zkt j: [394049]
        Other proteins in same PDB: d6zkt11, d6zkt12, d6zkt13, d6zktg_
        automated match to d2qnwa_
        complexed with 3pe, amp, cdl, fes, fmn, k, myr, ndp, pc1, sf4, zmp, zn
      2. Domain d6zktx_: 6zkt X: [394059]
        Other proteins in same PDB: d6zkt11, d6zkt12, d6zkt13, d6zktg_
        automated match to d2qnwa_
        complexed with 3pe, amp, cdl, fes, fmn, k, myr, ndp, pc1, sf4, zmp, zn
    16. Domains for 6zku:
      1. Domain d6zkuj_: 6zku j: [394033]
        Other proteins in same PDB: d6zku11, d6zku12, d6zku13, d6zkug_
        automated match to d2qnwa_
        complexed with 3pe, amp, cdl, fes, fmn, k, myr, ndp, pc1, sf4, zmp, zn
      2. Domain d6zkux_: 6zku X: [394023]
        Other proteins in same PDB: d6zku11, d6zku12, d6zku13, d6zkug_
        automated match to d2qnwa_
        complexed with 3pe, amp, cdl, fes, fmn, k, myr, ndp, pc1, sf4, zmp, zn
    17. Domains for 6zkv:
      1. Domain d6zkvj_: 6zkv j: [394030]
        Other proteins in same PDB: d6zkv11, d6zkv12, d6zkv13, d6zkv4_, d6zkvg_
        automated match to d2qnwa_
        complexed with 3pe, amp, cdl, fes, fmn, k, myr, ndp, pc1, sf4, zmp, zn
      2. Domain d6zkvx_: 6zkv X: [394042]
        Other proteins in same PDB: d6zkv11, d6zkv12, d6zkv13, d6zkv4_, d6zkvg_
        automated match to d2qnwa_
        complexed with 3pe, amp, cdl, fes, fmn, k, myr, ndp, pc1, sf4, zmp, zn
  19. Plasmodium falciparum [TaxId:36329] [255175] (2 PDB entries)
    1. Domain for 2fq0:
    2. Domain for 2fq2:
  20. Rickettsia prowazekii [TaxId:272947] [255452] (1 PDB entry)
  21. Spinach (Spinacia oleracea) [TaxId:3562] [255038] (5 PDB entries)
    1. Domain for 2ava:
    2. Domain for 2fva:
    3. Domain for 2fve:
    4. Domain for 2fvf:
    5. Domain for 2xz0:
  22. Staphylococcus aureus [TaxId:93062] [256240] (1 PDB entry)
  23. Streptomyces coelicolor [TaxId:100226] [255091] (1 PDB entry)
  24. Streptomyces coelicolor [TaxId:1902] [255367] (5 PDB entries)
    1. Domain for 2koo:
    2. Domain for 2kop:
    3. Domain for 2koq:
    4. Domain for 2kor:
    5. Domain for 2kos:
  25. Streptomyces sp. [TaxId:1001349] [258245] (2 PDB entries)
    1. Domain for 4pwv:
    2. Domains for 4pxh:
      1. Domain d4pxhb1: 4pxh B:6-78 [258778]
        Other proteins in same PDB: d4pxha_, d4pxhb2, d4pxhc_, d4pxhd2, d4pxhe_, d4pxhf2
        automated match to d1dnya_
        complexed with hem, kh4
      2. Domain d4pxhd1: 4pxh D:6-78 [258777]
        Other proteins in same PDB: d4pxha_, d4pxhb2, d4pxhc_, d4pxhd2, d4pxhe_, d4pxhf2
        automated match to d1dnya_
        complexed with hem, kh4
      3. Domain d4pxhf1: 4pxh F:6-78 [259097]
        Other proteins in same PDB: d4pxha_, d4pxhb2, d4pxhc_, d4pxhd2, d4pxhe_, d4pxhf2
        automated match to d1dnya_
        complexed with hem, kh4
  26. Streptomyces sp. [TaxId:1670457] [384983] (1 PDB entry)
  27. Thermotoga maritima [TaxId:243274] [384042] (2 PDB entries)
    1. Domain for 6lvt:
    2. Domains for 6lvu:
      1. Domain d6lvua_: 6lvu A: [384043]
        automated match to d1x3oa_
        complexed with zn
      2. Domain d6lvub_: 6lvu B: [384086]
        automated match to d1x3oa_
        complexed with zn
  28. Yarrowia lipolytica [TaxId:4952] [393676] (1 PDB entry)
    • Domains for 6yj4:
      1. Domain d6yj4t_: 6yj4 T: [393677]
        Other proteins in same PDB: d6yj4w_
        automated match to d5oomw_
        complexed with 3pe, cdl, ehz, fes, fmn, lmt, ndp, plc, sf4, zn
      2. Domain d6yj4u_: 6yj4 U: [393705]
        Other proteins in same PDB: d6yj4w_
        automated match to d2lola_
        complexed with 3pe, cdl, ehz, fes, fmn, lmt, ndp, plc, sf4, zn

More info for Protein automated matches from a.28.1.0: automated matches

Timeline for Protein automated matches from a.28.1.0: automated matches: