Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class a: All alpha proteins [46456] (290 folds)
  3. Fold a.118: alpha-alpha superhelix [48370] (28 superfamilies)
    multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
  4. Superfamily a.118.8: TPR-like [48452] (11 families) (S)
  5. Family a.118.8.0: automated matches [191581] (1 protein)
    not a true family
  6. Protein automated matches [191037] (12 species)
    not a true protein

Species:

  1. Bacteroides fragilis [TaxId:272559] [188861] (2 PDB entries)
    1. Domains for 3gzs:
      1. Domain d3gzsa_: 3gzs A: [177116]
        automated match to d3cgha1
        complexed with act, gol
      2. Domain d3gzsb_: 3gzs B: [177117]
        automated match to d3cgha1
        complexed with act, gol
    2. Domains for 3mx3:
      1. Domain d3mx3a_: 3mx3 A: [247839]
        automated match to d4lera_
        complexed with cl, epe, mg
      2. Domain d3mx3b_: 3mx3 B: [247840]
        automated match to d4lera_
        complexed with cl, epe, mg
  2. Bacteroides ovatus [TaxId:411476] [194986] (1 PDB entry)
  3. Bacteroides thetaiotaomicron [TaxId:226186] [228123] (2 PDB entries)
    1. Domain for 3fdh:
    2. Domains for 4mru:
      1. Domain d4mrua_: 4mru A: [228124]
        automated match to d3cgha1
        complexed with edo, mg
      2. Domain d4mrub_: 4mru B: [235680]
        automated match to d4mrua_
        complexed with edo, mg
  4. Bacteroides thetaiotaomicron [TaxId:818] [189698] (3 PDB entries)
    1. Domains for 3ehm:
      1. Domain d3ehma_: 3ehm A: [245866]
        automated match to d3gzsa_
        complexed with edo
      2. Domain d3ehmb_: 3ehm B: [245867]
        automated match to d3gzsa_
        complexed with edo
    2. Domains for 3ehn:
      1. Domain d3ehna_: 3ehn A: [245868]
        automated match to d3gzsa_
      2. Domain d3ehnb_: 3ehn B: [245869]
        automated match to d3gzsa_
    3. Domains for 3sgh:
      1. Domain d3sgha_: 3sgh A: [185372]
        automated match to d3cgha1
        complexed with cl
      2. Domain d3sghb_: 3sgh B: [185373]
        automated match to d3cgha1
        complexed with cl
  5. Bacteroides vulgatus [TaxId:435590] [226723] (1 PDB entry)
  6. Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [340488] (1 PDB entry)
  7. Flavobacterium johnsoniae [TaxId:376686] [329438] (1 PDB entry)
  8. Human (Homo sapiens) [TaxId:9606] [255451] (15 PDB entries)
    1. Domain for 2lni:
    2. Domain for 2oew:
    3. Domains for 3rau:
      1. Domain d3raua_: 3rau A: [341347]
        automated match to d5crua_
        complexed with act, edo, gol
      2. Domain d3raub_: 3rau B: [341348]
        automated match to d5crua_
        complexed with act, edo, gol
    4. Domains for 4kbq:
      1. Domain d4kbqa_: 4kbq A: [268316]
        Other proteins in same PDB: d4kbqc1, d4kbqc2, d4kbqd1, d4kbqd2
        automated match to d2vyib_
      2. Domain d4kbqb_: 4kbq B: [268315]
        Other proteins in same PDB: d4kbqc1, d4kbqc2, d4kbqd1, d4kbqd2
        automated match to d2vyib_
    5. Domains for 5cru:
      1. Domain d5crua_: 5cru A: [312892]
        automated match to d2oewa_
      2. Domain d5crub_: 5cru B: [312843]
        automated match to d2oewa_
      3. Domain d5cruc_: 5cru C: [312939]
        automated match to d2oewa_
      4. Domain d5crud_: 5cru D: [312835]
        automated match to d2oewa_
    6. Domains for 5mjz:
      1. Domain d5mjza_: 5mjz A: [337858]
        automated match to d5crua_
      2. Domain d5mjzb_: 5mjz B: [337873]
        automated match to d5crua_
    7. Domain for 5omp:
    8. Domain for 6fd7:
    9. Domain for 6fdp:
    10. Domain for 6fdt:
    11. Domain for 6i57:
    12. Domain for 6kp3:
    13. Domain for 6px0:
    14. Domain for 6zbk:
    15. Domain for 7bev:
  9. Nematode (Caenorhabditis elegans) [TaxId:6239] [226441] (2 PDB entries)
    1. Domain for 3rkv:
    2. Domain for 4gco:
  10. Norway rat (Rattus norvegicus) [TaxId:10116] [256317] (1 PDB entry)
  11. Thale cress (Arabidopsis thaliana) [TaxId:3702] [225165] (2 PDB entries)
    1. Domain for 2if4:
    2. Domains for 6hpg:
      1. Domain d6hpga_: 6hpg A: [358278]
        automated match to d2vyib_
      2. Domain d6hpgb_: 6hpg B: [358354]
        automated match to d2vyib_
      3. Domain d6hpgc_: 6hpg C: [358277]
        automated match to d2vyib_
      4. Domain d6hpgd_: 6hpg D: [358381]
        automated match to d2vyib_
      5. Domain d6hpge_: 6hpg E: [358337]
        automated match to d2vyib_
      6. Domain d6hpgf_: 6hpg F: [358295]
        automated match to d2vyib_
  12. Zebrafish (Danio rerio) [TaxId:7955] [225069] (1 PDB entry)

More info for Protein automated matches from a.118.8.0: automated matches

Timeline for Protein automated matches from a.118.8.0: automated matches: