Species:

1. Bacillus halodurans [TaxId:86665] [340856] (1 PDB entry)

   • Domains for 3fk9:

     1. Domain d3fk9a1: 3fk9 A:2-153 [340857] Other proteins in same PDB: d3fk9a2, d3fk9b2 automated match to d1irya_

     2. Domain d3fk9b1: 3fk9 B:2-153 [340858] Other proteins in same PDB: d3fk9a2, d3fk9b2 automated match to d1irya_

2. Bacteroides fragilis [TaxId:272559] [188860] (1 PDB entry)

   • Domains for 3gwy:

     1. Domain d3gwya1: 3gwy A:2-129 [177065] Other proteins in same PDB: d3gwya2, d3gwyb2, d3gwyb3 automated match to d1muta_

     2. Domain d3gwyb1: 3gwy B:2-130 [177066] Other proteins in same PDB: d3gwya2, d3gwyb2, d3gwyb3 automated match to d1muta_

3. Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [235108] (4 PDB entries)

   1. Domain for 2jvb:

      • Domain d2jvba_: 2jvb A: [242291] automated match to d4k6ea_

   2. Domain for 4k6e:

      • Domain d4k6ea_: 4k6e A: [235109] automated match to d2a6tb1 protein/RNA complex; complexed with mg

   3. Domains for 4kg3:

      1. Domain d4kg3a_: 4kg3 A: [240421] automated match to d4kg3c_ protein/RNA complex; complexed with mg; mutant

      2. Domain d4kg3b_: 4kg3 B: [240422] automated match to d4kg3c_ protein/RNA complex; complexed with mg; mutant

      3. Domain d4kg3c_: 4kg3 C: [235161] automated match to d2a6tb1 protein/RNA complex; complexed with mg; mutant

   4. Domains for 4kg4:

      1. Domain d4kg4a_: 4kg4 A: [235162] automated match to d2a6tb1 mutant

      2. Domain d4kg4b_: 4kg4 B: [240423] automated match to d4kg4a_ mutant

4. Bartonella henselae [TaxId:283166] [225687] (1 PDB entry)

   • Domains for 3hhj:

     1. Domain d3hhja_: 3hhj A: [211030] automated match to d3r03a_ complexed with mg

     2. Domain d3hhjb_: 3hhj B: [211031] automated match to d3r03a_ complexed with mg

5. Bdellovibrio bacteriovorus [TaxId:264462] [312720] (3 PDB entries)

   1. Domains for 5c7q:

      1. Domain d5c7qa_: 5c7q A: [312791] automated match to d1vhzb_ complexed with gol, peg, pg0, pge, so4

      2. Domain d5c7qb_: 5c7q B: [312721] automated match to d1vhzb_ complexed with gol, peg, pg0, pge, so4

   2. Domains for 5c7t:

      1. Domain d5c7ta_: 5c7t A: [312730] automated match to d1vhzb_ complexed with apr, gol, peg, pg0, pge, so4

      2. Domain d5c7tb_: 5c7t B: [312758] automated match to d1vhzb_ complexed with apr, gol, peg, pg0, pge, so4

   3. Domains for 5c8l:

      1. Domain d5c8la_: 5c8l A: [312735] automated match to d1vhzb_ complexed with glc, gol, peg, so4

      2. Domain d5c8lb_: 5c8l B: [312734] automated match to d1vhzb_ complexed with glc, gol, peg, so4

6. Bdellovibrio bacteriovorus [TaxId:959] [225632] (4 PDB entries)

   1. Domains for 3ees:

      1. Domain d3eesa_: 3ees A: [209468] automated match to d3gwyb_

      2. Domain d3eesb_: 3ees B: [209469] automated match to d3gwyb_

   2. Domains for 3eeu:

      1. Domain d3eeua_: 3eeu A: [209470] automated match to d3gwyb_ protein/RNA complex; complexed with act, cl, ho

      2. Domain d3eeub_: 3eeu B: [209471] automated match to d3gwyb_ protein/RNA complex; complexed with act, cl, ho

   3. Domains for 3ef5:

      1. Domain d3ef5a_: 3ef5 A: [209482] automated match to d3gwyb_ protein/RNA complex; complexed with dgt

      2. Domain d3ef5b_: 3ef5 B: [209483] automated match to d3gwyb_ protein/RNA complex; complexed with dgt

   4. Domains for 3ffu:

      1. Domain d3ffua_: 3ffu A: [209890] automated match to d3gwyb_ protein/RNA complex; complexed with gtp, mg

      2. Domain d3ffub_: 3ffu B: [209891] automated match to d3gwyb_ protein/RNA complex; complexed with gtp, mg

7. Burkholderia pseudomallei [TaxId:320372] [256243] (1 PDB entry)

   • Domains for 4dyw:

     1. Domain d4dywa_: 4dyw A: [251633] automated match to d3hhja_

     2. Domain d4dywb_: 4dyw B: [251634] automated match to d3hhja_

8. Chlamydia trachomatis [TaxId:471472] [230253] (2 PDB entries)

   1. Domain for 4ilq:

      • Domain d4ilqa_: 4ilq A: [230254] automated match to d3u53c_ complexed with gol, so4

   2. Domains for 4mpo:

      1. Domain d4mpoa_: 4mpo A: [236206] automated match to d4ilqa_ complexed with amp, cl, mg, po4

      2. Domain d4mpob_: 4mpo B: [236205] automated match to d4ilqa_ complexed with amp, cl, mg, po4

      3. Domain d4mpoc_: 4mpo C: [236207] automated match to d4ilqa_ complexed with amp, cl, mg, po4

      4. Domain d4mpod_: 4mpo D: [236208] automated match to d4ilqa_ complexed with amp, cl, mg, po4

      5. Domain d4mpoe_: 4mpo E: [236209] automated match to d4ilqa_ complexed with amp, cl, mg, po4

      6. Domain d4mpof_: 4mpo F: [236210] automated match to d4ilqa_ complexed with amp, cl, mg, po4

      7. Domain d4mpog_: 4mpo G: [236212] automated match to d4ilqa_ complexed with amp, cl, mg, po4

      8. Domain d4mpoh_: 4mpo H: [236211] automated match to d4ilqa_ complexed with amp, cl, mg, po4

9. Escherichia coli K-12 [TaxId:83333] [255588] (1 PDB entry)

   • Domain for 2rrk:

     • Domain d2rrka1: 2rrk A:6-140 [243759] Other proteins in same PDB: d2rrka2 automated match to d3r03b_

10. Escherichia coli [TaxId:405955] [188925] (4 PDB entries)

    1. Domains for 3dku:

       1. Domain d3dkua_: 3dku A: [199240] automated match to d3shdk_

       2. Domain d3dkub_: 3dku B: [199241] automated match to d3dkud_

       3. Domain d3dkuc_: 3dku C: [199242] automated match to d3shdk_

       4. Domain d3dkud_: 3dku D: [174044] automated match to d2b0va1

       5. Domain d3dkue_: 3dku E: [199243] automated match to d3shdk_

       6. Domain d3dkuf_: 3dku F: [199244] automated match to d3shdk_

       7. Domain d3dkug_: 3dku G: [199245] automated match to d3shdk_

       8. Domain d3dkuh_: 3dku H: [199246] automated match to d3dkud_

    2. Domains for 3shd:

       1. Domain d3shda_: 3shd A: [200659] automated match to d3shdk_ complexed with mn, so4

       2. Domain d3shdb_: 3shd B: [200660] automated match to d3shdk_ complexed with mn, so4

       3. Domain d3shdc_: 3shd C: [200661] automated match to d3shdk_ complexed with mn, so4

       4. Domain d3shdd_: 3shd D: [200662] automated match to d3shdk_ complexed with mn, so4

       5. Domain d3shde_: 3shd E: [200663] automated match to d3shdk_ complexed with mn, so4

       6. Domain d3shdf_: 3shd F: [200664] automated match to d3shdk_ complexed with mn, so4

       7. Domain d3shdg_: 3shd G: [200665] automated match to d3shdk_ complexed with mn, so4

       8. Domain d3shdh_: 3shd H: [195041] automated match to d3dkud_ complexed with mn, so4

       9. Domain d3shdi_: 3shd I: [195040] automated match to d3dkud_ complexed with mn, so4

       10. Domain d3shdj_: 3shd J: [195039] automated match to d3dkud_ complexed with mn, so4

       11. Domain d3shdk_: 3shd K: [195038] automated match to d3dkud_ complexed with mn, so4

       12. Domain d3shdl_: 3shd L: [200666] automated match to d3shdk_ complexed with mn, so4

    3. Domains for 4nfw:

       1. Domain d4nfwa_: 4nfw A: [257144] automated match to d3dkua_ complexed with mn, so4

       2. Domain d4nfwb_: 4nfw B: [263131] automated match to d3dkua_ complexed with mn, so4

       3. Domain d4nfwc_: 4nfw C: [263132] automated match to d3dkua_ complexed with mn, so4

       4. Domain d4nfwd_: 4nfw D: [263133] automated match to d3dkua_ complexed with mn, so4

       5. Domain d4nfwe_: 4nfw E: [263134] automated match to d3dkua_ complexed with mn, so4

       6. Domain d4nfwf_: 4nfw F: [263135] automated match to d3dkua_ complexed with mn, so4

       7. Domain d4nfwg_: 4nfw G: [263136] automated match to d3dkua_ complexed with mn, so4

       8. Domain d4nfwh_: 4nfw H: [263137] automated match to d3dkua_ complexed with mn, so4

       9. Domain d4nfwi_: 4nfw I: [263138] automated match to d3dkua_ complexed with mn, so4

       10. Domain d4nfwj_: 4nfw J: [263139] automated match to d3dkua_ complexed with mn, so4

       11. Domain d4nfwk_: 4nfw K: [263140] automated match to d3dkua_ complexed with mn, so4

       12. Domain d4nfwl_: 4nfw L: [263141] automated match to d3dkua_ complexed with mn, so4

    4. Domains for 4nfx:

       1. Domain d4nfxa_: 4nfx A: [266920] automated match to d3dkua_

       2. Domain d4nfxb_: 4nfx B: [266921] automated match to d3dkua_

       3. Domain d4nfxc_: 4nfx C: [266922] automated match to d3dkua_

       4. Domain d4nfxd_: 4nfx D: [266923] automated match to d3dkua_

       5. Domain d4nfxe_: 4nfx E: [266924] automated match to d3dkua_

       6. Domain d4nfxf_: 4nfx F: [266925] automated match to d3dkua_

       7. Domain d4nfxg_: 4nfx G: [266926] automated match to d3dkua_

       8. Domain d4nfxh_: 4nfx H: [266927] automated match to d3dkua_

11. Human (Homo sapiens) [TaxId:9606] [225626] (4 PDB entries)

    1. Domain for 3gg6:

       • Domain d3gg6a_: 3gg6 A: [210527] automated match to d2b0va1

    2. Domain for 3kvh:

       • Domain d3kvha_: 3kvh A: [212552] automated match to d1u20a1 complexed with cl, gol

    3. Domain for 4hvy:

       • Domain d4hvya_: 4hvy A: [230248] automated match to d3gg6a_ complexed with gol, mg, na, so4

    4. Domain for 5mp0:

       • Domain d5mp0d_: 5mp0 D: [336057] automated match to d2a6tb1 complexed with edo

12. Mus musculus [TaxId:10090] [316181] (1 PDB entry)

    • Domains for 4zg0:

      1. Domain d4zg0a_: 4zg0 A: [316182] automated match to d3kvha_

      2. Domain d4zg0b_: 4zg0 B: [316199] automated match to d3kvha_

13. Plasmodium falciparum [TaxId:36329] [312746] (2 PDB entries)

    1. Domains for 5cfi:

       1. Domain d5cfia_: 5cfi A: [313134] automated match to d1kt9a_

       2. Domain d5cfib_: 5cfi B: [313162] automated match to d1kt9a_

       3. Domain d5cfic_: 5cfi C: [312794] automated match to d1kt9a_

       4. Domain d5cfid_: 5cfi D: [312747] automated match to d1kt9a_

    2. Domain for 5cfj:

       • Domain d5cfja_: 5cfj A: [312783] automated match to d1kt9a_ complexed with peg, so4

14. Rhodospirillum rubrum [TaxId:269796] [189854] (1 PDB entry)

    • Domains for 3r03:

      1. Domain d3r03a_: 3r03 A: [184751] automated match to d1muta_ complexed with adp

      2. Domain d3r03b_: 3r03 B: [184752] automated match to d1muta_ complexed with adp

15. Staphylococcus aureus [TaxId:548470] [330265] (1 PDB entry)

    • Domain for 5x1x:

      • Domain d5x1xa_: 5x1x A: [330266] automated match to d4v14a_

16. Vibrio cholerae [TaxId:666] [270713] (1 PDB entry)

    • Domains for 4v14:

      1. Domain d4v14a_: 4v14 A: [270714] Other proteins in same PDB: d4v14b2 automated match to d3gwyb_

      2. Domain d4v14b1: 4v14 B:2-131 [270715] Other proteins in same PDB: d4v14b2 automated match to d3gwyb_

More info for Protein automated matches from d.113.1.0: automated matches

Timeline for Protein automated matches from d.113.1.0: automated matches:

• Protein automated matches from d.113.1.0: automated matches first appeared in SCOPe 2.01
  
• Protein automated matches from d.113.1.0: automated matches appears in SCOPe 2.05
  
• Protein automated matches from d.113.1.0: automated matches appears in SCOPe 2.07
  
• Protein automated matches from d.113.1.0: automated matches appears in the current release, SCOPe 2.08