Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2021373Class b: All beta proteins [48724] (177 folds)
  3. 2053585Fold b.34: SH3-like barrel [50036] (21 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. 2055542Superfamily b.34.13: Chromo domain-like [54160] (4 families) (S)
    SH3-like barrel is capped by a C-terminal helix
  5. 2055586Family b.34.13.2: Chromo domain [54165] (8 proteins)
    lacks the SH3-like barrel first strand that can be complemented by bound peptide ligand; in shadow chromo domain the corresponding site is altered by insertion; similarity to the IL8-like fold
  6. 2055663Protein automated matches [191035] (3 species)
    not a true protein

Species:

  1. 2055664Human (Homo sapiens) [TaxId:9606] [188859] (13 PDB entries)
    1. Domain for 2d9u:
    2. Domain for 2k28:
    3. Domain for 2mj8:
    4. Domain for 3gv6:
    5. Domains for 3h91:
      1. 2055665Domain d3h91a_: 3h91 A: [177326]
        automated match to d2dnva1
        protein/DNA complex
      2. 2055666Domain d3h91b_: 3h91 B: [177327]
        automated match to d2dnva1
        protein/DNA complex
    6. Domains for 3i3c:
      1. 2055681Domain d3i3ca_: 3i3c A: [178043]
        automated match to d1s4za_
        complexed with na
      2. 2055682Domain d3i3cb_: 3i3c B: [178044]
        automated match to d1s4za_
        complexed with na
      3. 2055683Domain d3i3cc_: 3i3c C: [178045]
        automated match to d1s4za_
        complexed with na
      4. 2055684Domain d3i3cd_: 3i3c D: [178046]
        automated match to d1s4za_
        complexed with na
    7. Domain for 3i8z:
    8. Domains for 3i90:
      1. 2055679Domain d3i90a_: 3i90 A: [178151]
        automated match to d2dnva1
      2. 2055680Domain d3i90b_: 3i90 B: [178152]
        automated match to d2dnva1
    9. Domains for 3i91:
      1. 2055668Domain d3i91a_: 3i91 A: [178153]
        automated match to d2dnva1
      2. 2055669Domain d3i91b_: 3i91 B: [178154]
        automated match to d2dnva1
    10. Domains for 3kup:
      1. 2055672Domain d3kupa_: 3kup A: [179720]
        automated match to d1dz1a_
        complexed with unx
      2. 2055673Domain d3kupb_: 3kup B: [179721]
        automated match to d1dz1a_
        complexed with unx
      3. 2055674Domain d3kupc_: 3kup C: [179722]
        automated match to d1dz1a_
        complexed with unx
      4. 2055675Domain d3kupd_: 3kup D: [179723]
        automated match to d1dz1a_
        complexed with unx
    11. Domain for 3tzd:
    12. Domain for 4hae:
    13. Domains for 5afw:
      1. 2055676Domain d5afwa1: 5afw A:270-362 [280235]
        automated match to d2b2yb2
        complexed with cl, edo
      2. 2055677Domain d5afwa2: 5afw A:374-443 [280238]
        automated match to d2b2ta2
        complexed with cl, edo
  2. 2055688Mouse (Mus musculus) [TaxId:10090] [255382] (5 PDB entries)
    1. Domains for 1e13:
      1. 2055698Domain d1e13a1: 1e13 A:104-171 [302358]
        Other proteins in same PDB: d1e13a2, d1e13b2
        automated match to d1s4za_
      2. 2055699Domain d1e13b1: 1e13 B:104-171 [302360]
        Other proteins in same PDB: d1e13a2, d1e13b2
        automated match to d1s4za_
    2. Domain for 2kvm:
    3. Domains for 4x3t:
      1. 2055691Domain d4x3ta1: 4x3t A:7-66 [270093]
        Other proteins in same PDB: d4x3ta2, d4x3tb2, d4x3tc2, d4x3td2, d4x3te2, d4x3tf2
        automated match to d2kvma_
        complexed with 45e, edo, zn
      2. 2055692Domain d4x3tb1: 4x3t B:7-64 [270095]
        Other proteins in same PDB: d4x3ta2, d4x3tb2, d4x3tc2, d4x3td2, d4x3te2, d4x3tf2
        automated match to d2kvma_
        complexed with 45e, edo, zn
      3. 2055693Domain d4x3tc1: 4x3t C:7-66 [270101]
        Other proteins in same PDB: d4x3ta2, d4x3tb2, d4x3tc2, d4x3td2, d4x3te2, d4x3tf2
        automated match to d2kvma_
        complexed with 45e, edo, zn
      4. 2055694Domain d4x3td1: 4x3t D:7-66 [270097]
        Other proteins in same PDB: d4x3ta2, d4x3tb2, d4x3tc2, d4x3td2, d4x3te2, d4x3tf2
        automated match to d2kvma_
        complexed with 45e, edo, zn
      5. 2055695Domain d4x3te1: 4x3t E:7-55 [270100]
        Other proteins in same PDB: d4x3ta2, d4x3tb2, d4x3tc2, d4x3td2, d4x3te2, d4x3tf2
        automated match to d2kvma_
        complexed with 45e, edo, zn
      6. 2055696Domain d4x3tf1: 4x3t F:7-60 [270102]
        Other proteins in same PDB: d4x3ta2, d4x3tb2, d4x3tc2, d4x3td2, d4x3te2, d4x3tf2
        automated match to d2kvma_
        complexed with 45e, edo, zn
    4. Domains for 4x3u:
      1. 2055689Domain d4x3ua_: 4x3u A: [270096]
        automated match to d2kvma_
        complexed with svr
      2. 2055690Domain d4x3ub_: 4x3u B: [270094]
        automated match to d2kvma_
        complexed with svr
    5. Domain for 5ejw:
  3. 2055701Thale cress (Arabidopsis thaliana) [TaxId:3702] [279724] (2 PDB entries)
    1. Domain for 2n88:
    2. Domain for 5e4x:

More info for Protein automated matches from b.34.13.2: Chromo domain

Timeline for Protein automated matches from b.34.13.2: Chromo domain: