SCOPe 2.01: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.01
Class b: All beta proteins [48724] (174 folds)
Fold b.34: SH3-like barrel [50036] (21 superfamilies)
barrel, partly opened; n*=4, S*=8; meander
the last strand is interrupted by a turn of 3-10 helix
Superfamily b.34.13: Chromo domain-like [54160] (4 families)
SH3-like barrel is capped by a C-terminal helix

Family b.34.13.2: Chromo domain [54165] (8 proteins)
lacks the SH3-like barrel first strand that can be complemented by bound peptide ligand; in shadow chromo domain the corresponding site is altered by insertion; similarity to the IL8-like fold

Protein automated matches [191035] (1 species)
not a true protein

Species:

Human (Homo sapiens) [TaxId:9606] [188859] (7 PDB entries)
1. Domain for 3gv6:
  - Domain d3gv6a_: 3gv6 A: [177024]
    automated match to d2dnva1
    protein/DNA complex
2. Domains for 3h91:
  1. Domain d3h91a_: 3h91 A: [177326]
    automated match to d2dnva1
    protein/DNA complex
  2. Domain d3h91b_: 3h91 B: [177327]
    automated match to d2dnva1
    protein/DNA complex
3. Domains for 3i3c:
  1. Domain d3i3ca_: 3i3c A: [178043]
    automated match to d1s4za_
    complexed with na
  2. Domain d3i3cb_: 3i3c B: [178044]
    automated match to d1s4za_
    complexed with na
  3. Domain d3i3cc_: 3i3c C: [178045]
    automated match to d1s4za_
    complexed with na
  4. Domain d3i3cd_: 3i3c D: [178046]
    automated match to d1s4za_
    complexed with na
4. Domain for 3i8z:
  - Domain d3i8za_: 3i8z A: [178150]
    automated match to d2dnva1
5. Domains for 3i90:
  1. Domain d3i90a_: 3i90 A: [178151]
    automated match to d2dnva1
  2. Domain d3i90b_: 3i90 B: [178152]
    automated match to d2dnva1
6. Domains for 3i91:
  1. Domain d3i91a_: 3i91 A: [178153]
    automated match to d2dnva1
  2. Domain d3i91b_: 3i91 B: [178154]
    automated match to d2dnva1
7. Domains for 3kup:
  1. Domain d3kupa_: 3kup A: [179720]
    automated match to d1dz1a_
    complexed with unx
  2. Domain d3kupb_: 3kup B: [179721]
    automated match to d1dz1a_
    complexed with unx
  3. Domain d3kupc_: 3kup C: [179722]
    automated match to d1dz1a_
    complexed with unx
  4. Domain d3kupd_: 3kup D: [179723]
    automated match to d1dz1a_
    complexed with unx

More info for Protein automated matches from b.34.13.2: Chromo domain

Timeline for Protein automated matches from b.34.13.2: Chromo domain:

Protein automated matches from b.34.13.2: Chromo domain is new in SCOPe 2.01-stable
Protein automated matches from b.34.13.2: Chromo domain appears in SCOPe 2.02
Protein automated matches from b.34.13.2: Chromo domain appears in the current release, SCOPe 2.07