Class b: All beta proteins [48724] (180 folds) |
Fold b.34: SH3-like barrel [50036] (21 superfamilies) barrel, partly opened; n*=4, S*=8; meander the last strand is interrupted by a turn of 3-10 helix |
Superfamily b.34.13: Chromo domain-like [54160] (4 families) SH3-like barrel is capped by a C-terminal helix |
Family b.34.13.2: Chromo domain [54165] (8 proteins) lacks the SH3-like barrel first strand that can be complemented by bound peptide ligand; in shadow chromo domain the corresponding site is altered by insertion; similarity to the IL8-like fold |
Protein automated matches [191035] (3 species) not a true protein |
Human (Homo sapiens) [TaxId:9606] [188859] (14 PDB entries) |
Domain d2d9ua1: 2d9u A:8-68 [241527] Other proteins in same PDB: d2d9ua2, d2d9ua3 automated match to d2dnta1 |
Domain d2k28a1: 2k28 A:3-60 [242355] Other proteins in same PDB: d2k28a2 automated match to d2dnta1 |
Domain d2mj8a1: 2mj8 A:2-64 [256432] Other proteins in same PDB: d2mj8a2 automated match to d2dnta1 |
Domain d3gv6a_: 3gv6 A: [177024] automated match to d2dnva1 protein/DNA complex |
Domain d3h91a_: 3h91 A: [177326] automated match to d2dnva1 protein/DNA complex |
Domain d3h91b_: 3h91 B: [177327] automated match to d2dnva1 protein/DNA complex |
Domain d3i3ca_: 3i3c A: [178043] automated match to d1s4za_ complexed with na |
Domain d3i3cb_: 3i3c B: [178044] automated match to d1s4za_ complexed with na |
Domain d3i3cc_: 3i3c C: [178045] automated match to d1s4za_ complexed with na |
Domain d3i3cd_: 3i3c D: [178046] automated match to d1s4za_ complexed with na |
Domain d3i8za_: 3i8z A: [178150] automated match to d2dnva1 |
Domain d3i90a_: 3i90 A: [178151] automated match to d2dnva1 |
Domain d3i90b_: 3i90 B: [178152] automated match to d2dnva1 |
Domain d3i91a_: 3i91 A: [178153] automated match to d2dnva1 |
Domain d3i91b_: 3i91 B: [178154] automated match to d2dnva1 |
Domain d3kupa_: 3kup A: [179720] automated match to d1dz1a_ complexed with unx |
Domain d3kupb_: 3kup B: [179721] automated match to d1dz1a_ complexed with unx |
Domain d3kupc_: 3kup C: [179722] automated match to d1dz1a_ complexed with unx |
Domain d3kupd_: 3kup D: [179723] automated match to d1dz1a_ complexed with unx |
Domain d3tzda1: 3tzd A:29-81 [217114] Other proteins in same PDB: d3tzda2 automated match to d4haea_ protein/DNA complex |
Domain d4haea1: 4hae A:2-60 [194545] Other proteins in same PDB: d4haea2 automated match to d2dnta1 complexed with so4, unx |
Domain d5afwa1: 5afw A:270-362 [280235] automated match to d2b2yb2 complexed with cl, edo |
Domain d5afwa2: 5afw A:374-443 [280238] automated match to d2b2ta2 complexed with cl, edo |
Domain d6hw2b_: 6hw2 B: [379461] automated match to d2fmma_ complexed with act, bme, ca, gol |
Domain d6hw2c_: 6hw2 C: [379432] automated match to d2fmma_ complexed with act, bme, ca, gol |
Mouse (Mus musculus) [TaxId:10090] [255382] (5 PDB entries) |
Domain d1e13a1: 1e13 A:104-171 [302358] Other proteins in same PDB: d1e13a2, d1e13b2 automated match to d1s4za_ |
Domain d1e13b1: 1e13 B:104-171 [302360] Other proteins in same PDB: d1e13a2, d1e13b2 automated match to d1s4za_ |
Domain d2kvma_: 2kvm A: [242678] automated match to d3gv6a_ |
Domain d4x3ta1: 4x3t A:7-66 [270093] Other proteins in same PDB: d4x3ta2, d4x3tb2, d4x3tc2, d4x3td2, d4x3te2, d4x3tf2 automated match to d2kvma_ complexed with 45e, edo, zn |
Domain d4x3tb1: 4x3t B:7-64 [270095] Other proteins in same PDB: d4x3ta2, d4x3tb2, d4x3tc2, d4x3td2, d4x3te2, d4x3tf2 automated match to d2kvma_ complexed with 45e, edo, zn |
Domain d4x3tc1: 4x3t C:7-66 [270101] Other proteins in same PDB: d4x3ta2, d4x3tb2, d4x3tc2, d4x3td2, d4x3te2, d4x3tf2 automated match to d2kvma_ complexed with 45e, edo, zn |
Domain d4x3td1: 4x3t D:7-66 [270097] Other proteins in same PDB: d4x3ta2, d4x3tb2, d4x3tc2, d4x3td2, d4x3te2, d4x3tf2 automated match to d2kvma_ complexed with 45e, edo, zn |
Domain d4x3te1: 4x3t E:7-55 [270100] Other proteins in same PDB: d4x3ta2, d4x3tb2, d4x3tc2, d4x3td2, d4x3te2, d4x3tf2 automated match to d2kvma_ complexed with 45e, edo, zn |
Domain d4x3tf1: 4x3t F:7-60 [270102] Other proteins in same PDB: d4x3ta2, d4x3tb2, d4x3tc2, d4x3td2, d4x3te2, d4x3tf2 automated match to d2kvma_ complexed with 45e, edo, zn |
Domain d4x3ua_: 4x3u A: [270096] automated match to d2kvma_ complexed with svr |
Domain d4x3ub_: 4x3u B: [270094] automated match to d2kvma_ complexed with svr |
Domain d5ejwa1: 5ejw A:1-68 [313777] Other proteins in same PDB: d5ejwa2 automated match to d2kvma_ complexed with 5pz |
Thale cress (Arabidopsis thaliana) [TaxId:3702] [279724] (2 PDB entries) |
Domain d2n88a_: 2n88 A: [279835] automated match to d1x3pa1 |
Domain d5e4xa_: 5e4x A: [279725] automated match to d1x3pa1 complexed with mg |
Timeline for Protein automated matches from b.34.13.2: Chromo domain: