Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1998615Fold a.60: SAM domain-like [47768] (16 superfamilies)
    4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
  4. 1998907Superfamily a.60.3: C-terminal domain of RNA polymerase alpha subunit [47789] (1 family) (S)
    contains one classic and one pseudo HhH motifs
  5. 1998908Family a.60.3.1: C-terminal domain of RNA polymerase alpha subunit [47790] (2 protein domains)
  6. 1998920Protein automated matches [191020] (3 species)
    not a true protein

Species:

  1. 1998921Bacillus subtilis [TaxId:1423] [188809] (2 PDB entries)
    1. Domain for 3gfk:
    2. Domain for 3ihq:
      • 1998922Domain d3ihqb_: 3ihq B: [178327]
        Other proteins in same PDB: d3ihqa_
        automated match to d1z3eb1
        protein/DNA complex; protein/RNA complex; complexed with imd
  2. 1998924Escherichia coli [311177] (1 PDB entry)
  3. 1998926Escherichia coli K-12 [TaxId:83333] [189388] (2 PDB entries)
    1. Domains for 3k4g:
      1. 1998927Domain d3k4ga_: 3k4g A: [179067]
        automated match to d1cooa_
        complexed with na
      2. 1998928Domain d3k4gb_: 3k4g B: [179068]
        automated match to d1cooa_
        complexed with na
      3. 1998929Domain d3k4gc_: 3k4g C: [179069]
        automated match to d1cooa_
        complexed with na
      4. 1998930Domain d3k4gd_: 3k4g D: [179070]
        automated match to d1cooa_
        complexed with na
      5. 1998931Domain d3k4ge_: 3k4g E: [179071]
        automated match to d1cooa_
        complexed with na
      6. 1998932Domain d3k4gf_: 3k4g F: [179072]
        automated match to d1cooa_
        complexed with na
      7. 1998933Domain d3k4gg_: 3k4g G: [179073]
        automated match to d1cooa_
        complexed with na
      8. 1998934Domain d3k4gh_: 3k4g H: [179074]
        automated match to d1cooa_
        complexed with na
    2. Domains for 3n4m:
      1. 1998935Domain d3n4mb_: 3n4m B: [181899]
        Other proteins in same PDB: d3n4ma1, d3n4ma2
        automated match to d1cooa_
        protein/DNA complex; protein/RNA complex; complexed with cmp, peg
      2. 1998936Domain d3n4mc_: 3n4m C: [181900]
        Other proteins in same PDB: d3n4ma1, d3n4ma2
        automated match to d1cooa_
        protein/DNA complex; protein/RNA complex; complexed with cmp, peg

More info for Protein automated matches from a.60.3.1: C-terminal domain of RNA polymerase alpha subunit

Timeline for Protein automated matches from a.60.3.1: C-terminal domain of RNA polymerase alpha subunit: