Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2323932Fold a.55: IHF-like DNA-binding proteins [47728] (1 superfamily)
    core: 4 helices; bundle, partly opened, capped with a beta-sheet
  4. 2323933Superfamily a.55.1: IHF-like DNA-binding proteins [47729] (3 families) (S)
    dimer of identical subunits
  5. 2323998Family a.55.1.0: automated matches [191573] (1 protein)
    not a true family
  6. 2323999Protein automated matches [191007] (9 species)
    not a true protein

Species:

  1. 2324000Escherichia coli [TaxId:562] [189967] (1 PDB entry)
  2. 2324003Lactococcus lactis [TaxId:272623] [340465] (1 PDB entry)
  3. 2324008Lyme disease spirochete (Borrelia burgdorferi) [TaxId:139] [255508] (1 PDB entry)
  4. 2324011Mycobacterium tuberculosis [TaxId:1773] [188755] (3 PDB entries)
    1. Domains for 3c4i:
      1. 2324012Domain d3c4ia_: 3c4i A: [305146]
        automated match to d4pt4a_
        complexed with fmt
      2. 2324013Domain d3c4ib_: 3c4i B: [305147]
        automated match to d4pt4a_
        complexed with fmt
    2. Domains for 4dky:
      1. 2324016Domain d4dkya_: 4dky A: [193265]
        Other proteins in same PDB: d4dkyb2
        automated match to d3c4ia_
        complexed with mn
      2. 2324017Domain d4dkyb1: 4dky B:1-98 [201717]
        Other proteins in same PDB: d4dkyb2
        automated match to d4dkya_
        complexed with mn
    3. Domains for 4pt4:
      1. 2324014Domain d4pt4a_: 4pt4 A: [257547]
        automated match to d3c4ia_
        complexed with fmt
      2. 2324015Domain d4pt4b_: 4pt4 B: [257546]
        automated match to d3c4ia_
        complexed with fmt
  5. 2324018Mycoplasma gallisepticum [TaxId:1006581] [346180] (1 PDB entry)
  6. 2324021Spiroplasma melliferum [TaxId:570509] [260909] (3 PDB entries)
    1. Domain for 4n1v:
    2. Domain for 5l8z:
    3. Domains for 5ogu:
      1. 2324024Domain d5ogua1: 5ogu A:1-93 [338246]
        Other proteins in same PDB: d5ogua2, d5ogub2
        automated match to d1owfa_
      2. 2324025Domain d5ogub1: 5ogu B:1-93 [338253]
        Other proteins in same PDB: d5ogua2, d5ogub2
        automated match to d1owfa_
  7. 2324026Staphylococcus aureus [TaxId:158878] [261909] (1 PDB entry)
  8. 2324031Streptococcus mutans [TaxId:210007] [314035] (1 PDB entry)
  9. 2324034Thermus thermophilus [TaxId:300852] [319276] (1 PDB entry)

More info for Protein automated matches from a.55.1.0: automated matches

Timeline for Protein automated matches from a.55.1.0: automated matches: