Class b: All beta proteins [48724] (178 folds) |
Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies |
Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) |
Family b.121.4.0: automated matches [191569] (1 protein) not a true family |
Protein automated matches [190988] (22 species) not a true protein |
Aichivirus a [TaxId:72149] [312940] (1 PDB entry) |
Domain d5aooc_: 5aoo C: [312941] automated match to d1ncqc_ |
Bovine enterovirus (strain vg-5-27) [TaxId:12065] [395796] (2 PDB entries) |
Domain d6thd1_: 6thd 1: [395870] Other proteins in same PDB: d6thd3_ automated match to d5c4wa_ complexed with myr, so4 |
Domain d6thn1_: 6thn 1: [395797] Other proteins in same PDB: d6thn3_ automated match to d5c4wa_ complexed with myr, so4 |
Coxsackievirus a10 [TaxId:42769] [359971] (7 PDB entries) |
Domain d6aksa_: 6aks A: [362070] Other proteins in same PDB: d6aksc_ automated match to d4cdqa_ complexed with sph |
Domain d6aksb_: 6aks B: [362000] Other proteins in same PDB: d6aksc_ automated match to d4jgyb_ complexed with sph |
Domain d6aktb_: 6akt B: [362088] Other proteins in same PDB: d6aktc_ automated match to d4jgyb_ |
Domain d6akub_: 6aku B: [362106] Other proteins in same PDB: d6akuc_ automated match to d4jgyb_ |
Domain d6iija_: 6iij A: [359972] Other proteins in same PDB: d6iijc_ automated match to d4cdqa_ complexed with sph |
Domain d6iijb_: 6iij B: [359995] Other proteins in same PDB: d6iijc_ automated match to d4jgyb_ complexed with sph |
Domain d7bzna_: 7bzn A: [389828] Other proteins in same PDB: d7bznc_ automated match to d4cdqa_ complexed with sph |
Domain d7bznb_: 7bzn B: [389744] Other proteins in same PDB: d7bznc_ automated match to d4jgyb_ complexed with sph |
Domain d7bzta_: 7bzt A: [389728] Other proteins in same PDB: d7bztc_ automated match to d4cdqa_ complexed with nag, sph |
Domain d7bztb_: 7bzt B: [389857] Other proteins in same PDB: d7bztc_ automated match to d4jgyb_ complexed with nag, sph |
Domain d7bzua_: 7bzu A: [389742] Other proteins in same PDB: d7bzuc_ automated match to d4cdqa_ complexed with nag |
Domain d7bzub_: 7bzu B: [389797] Other proteins in same PDB: d7bzuc_ automated match to d4jgyb_ complexed with nag |
Coxsackievirus a16 (strain tainan/5079/98) [TaxId:231417] [277502] (1 PDB entry) |
Domain d5c8ca_: 5c8c A: [277503] Other proteins in same PDB: d5c8cc_ automated match to d4ceya_ complexed with cl, k, ste |
Coxsackievirus a16 [TaxId:31704] [276271] (7 PDB entries) |
Domain d5abja_: 5abj A: [276643] Other proteins in same PDB: d5abjc_ automated match to d4ceya_ complexed with cl, na, ym2 |
Domain d5abjb_: 5abj B: [276642] Other proteins in same PDB: d5abjc_ automated match to d4jgyb_ complexed with cl, na, ym2 |
Domain d5c4wa_: 5c4w A: [276273] Other proteins in same PDB: d5c4wc_ automated match to d4ceya_ complexed with cl, k, na, sph |
Domain d5c4wb_: 5c4w B: [276272] Other proteins in same PDB: d5c4wc_ automated match to d4jgyb_ complexed with cl, k, na, sph |
Domain d5c9aa_: 5c9a A: [276276] Other proteins in same PDB: d5c9ac_ automated match to d4ceya_ complexed with cl, k, sph |
Domain d6lhka_: 6lhk A: [379823] Other proteins in same PDB: d6lhkc_ automated match to d5c8ca_ complexed with sph |
Domain d6lhkb_: 6lhk B: [379788] Other proteins in same PDB: d6lhkc_ automated match to d5abjb_ complexed with sph |
Domain d6lhlb_: 6lhl B: [379810] Other proteins in same PDB: d6lhlc_ automated match to d5abjb_ |
Domain d6lhob_: 6lho B: [379809] Other proteins in same PDB: d6lhoc_ automated match to d5abjb_ |
Domain d6lhqa_: 6lhq A: [379793] Other proteins in same PDB: d6lhqc_, d6lhqh_, d6lhql_ automated match to d5c8ca_ complexed with sph |
Domain d6lhqb_: 6lhq B: [379775] Other proteins in same PDB: d6lhqc_, d6lhqh_, d6lhql_ automated match to d5abjb_ complexed with sph |
Coxsackievirus a6 [TaxId:86107] [339715] (1 PDB entry) |
Domain d5xs4a1: 5xs4 A:71-290 [339741] Other proteins in same PDB: d5xs4c_ automated match to d5abja_ |
Domain d5xs4b_: 5xs4 B: [339716] Other proteins in same PDB: d5xs4c_ automated match to d4jgyb_ |
Echovirus e11 [TaxId:12078] [390854] (4 PDB entries) |
Domain d6lapa_: 6lap A: [390855] Other proteins in same PDB: d6lapc_ automated match to d5xs4a1 |
Domain d6lb1a_: 6lb1 A: [390870] Other proteins in same PDB: d6lb1c_ automated match to d5xs4a1 |
Domain d6lboa_: 6lbo A: [390928] Other proteins in same PDB: d6lboc_ automated match to d5xs4a1 |
Domain d6lbqa_: 6lbq A: [390866] Other proteins in same PDB: d6lbqc_ automated match to d5xs4a1 |
Enterovirus a71 [TaxId:39054] [261947] (13 PDB entries) |
Domain d3vbob_: 3vbo B: [262351] automated match to d4rqpc_ complexed with na |
Domain d4cdqb_: 4cdq B: [262566] Other proteins in same PDB: d4cdqc_ automated match to d4rqpc_ complexed with 7vr, na |
Domain d4cdub_: 4cdu B: [262567] Other proteins in same PDB: d4cduc_ automated match to d4rqpc_ complexed with cl, na, ym2 |
Domain d4cdwb_: 4cdw B: [262568] Other proteins in same PDB: d4cdwc_ automated match to d4rqpc_ complexed with na, vr2 |
Domain d4cdxb_: 4cdx B: [262569] Other proteins in same PDB: d4cdxc_ automated match to d4rqpc_ complexed with jf0, na |
Domain d4cewb_: 4cew B: [262570] Other proteins in same PDB: d4cewc_ automated match to d4rqpc_ complexed with 7j5 |
Domain d4ceyb_: 4cey B: [262571] Other proteins in same PDB: d4ceyc_ automated match to d4rqpc_ complexed with 906, na |
Domain d4rqpc_: 4rqp C: [261948] Other proteins in same PDB: d4rqpb_, d4rqpf_, d4rqpj_, d4rqpn_, d4rqpr_ automated match to d1pov0_ |
Domain d4rqpg_: 4rqp G: [261951] Other proteins in same PDB: d4rqpb_, d4rqpf_, d4rqpj_, d4rqpn_, d4rqpr_ automated match to d1pov0_ |
Domain d4rqpk_: 4rqp K: [261956] Other proteins in same PDB: d4rqpb_, d4rqpf_, d4rqpj_, d4rqpn_, d4rqpr_ automated match to d1pov0_ |
Domain d4rqpo_: 4rqp O: [261967] Other proteins in same PDB: d4rqpb_, d4rqpf_, d4rqpj_, d4rqpn_, d4rqpr_ automated match to d1pov0_ |
Domain d6uh1a_: 6uh1 A: [378502] Other proteins in same PDB: d6uh1c_ automated match to d4ceya_ complexed with sph |
Domain d6uh1b_: 6uh1 B: [378514] Other proteins in same PDB: d6uh1c_ automated match to d3zfeb_ complexed with sph |
Domain d6uh6a_: 6uh6 A: [378479] Other proteins in same PDB: d6uh6c_ automated match to d4ceya_ complexed with sph |
Domain d6uh6b_: 6uh6 B: [378486] Other proteins in same PDB: d6uh6c_ automated match to d3zfeb_ complexed with sph |
Domain d6uh7a_: 6uh7 A: [378492] Other proteins in same PDB: d6uh7c_ automated match to d4ceya_ complexed with sph |
Domain d6uh7b_: 6uh7 B: [378503] Other proteins in same PDB: d6uh7c_ automated match to d3zfeb_ complexed with sph |
Domain d6z3pa_: 6z3p A: [393805] Other proteins in same PDB: d6z3pc_, d6z3pl_ automated match to d4ceya_ complexed with sph |
Domain d6z3pb_: 6z3p B: [393821] Other proteins in same PDB: d6z3pc_, d6z3pl_ automated match to d3zfeb_ complexed with sph |
Domain d6z3qa_: 6z3q A: [393806] Other proteins in same PDB: d6z3qc_, d6z3ql_ automated match to d4ceya_ complexed with sph |
Domain d6z3qb_: 6z3q B: [393819] Other proteins in same PDB: d6z3qc_, d6z3ql_ automated match to d3zfeb_ complexed with sph |
Enterovirus d68 [TaxId:42789] [269068] (15 PDB entries) |
Domain d4wm7a_: 4wm7 A: [269069] automated match to d1h8ta_ complexed with w11 |
Domain d4wm7c_: 4wm7 C: [269070] automated match to d3vbhc_ complexed with w11 |
Domain d4wm8a_: 4wm8 A: [269072] automated match to d1h8ta_ complexed with dka |
Domain d4wm8c_: 4wm8 C: [269073] automated match to d3vbhc_ complexed with dka |
Domain d5bnna_: 5bnn A: [279415] automated match to d1h8ta_ complexed with 4u0 |
Domain d5bnnc_: 5bnn C: [279414] automated match to d3vbhc_ complexed with 4u0 |
Domain d5bnoa_: 5bno A: [279409] automated match to d1h8ta_ complexed with 4u1 |
Domain d5bnoc_: 5bno C: [279413] automated match to d3vbhc_ complexed with 4u1 |
Domain d5bnpa_: 5bnp A: [279411] automated match to d1h8ta_ complexed with 4u2 |
Domain d5bnpc_: 5bnp C: [279412] automated match to d3vbhc_ complexed with 4u2 |
Domain d6cs4b_: 6cs4 B: [361381] automated match to d4wm8c_ |
Domain d6csga_: 6csg A: [361359] automated match to d4wm8a_ |
Domain d6csgb_: 6csg B: [361360] automated match to d4wm8c_ |
Domain d6cshb_: 6csh B: [361363] automated match to d4wm8c_ |
Domain d6cv1a_: 6cv1 A: [371821] automated match to d4wm8a_ |
Domain d6cv1b_: 6cv1 B: [371808] automated match to d4wm8c_ |
Domain d6cv2a_: 6cv2 A: [371807] automated match to d4wm8a_ |
Domain d6cv2b_: 6cv2 B: [371806] automated match to d4wm8c_ |
Domain d6cv4b_: 6cv4 B: [371809] automated match to d4wm8c_ |
Domain d6cv5a_: 6cv5 A: [371824] automated match to d4wm8a_ |
Domain d6cv5b_: 6cv5 B: [371803] automated match to d4wm8c_ |
Domain d6cvba_: 6cvb A: [371804] automated match to d4wm8a_ complexed with 4u1 |
Domain d6cvbb_: 6cvb B: [371805] automated match to d4wm8c_ complexed with 4u1 |
Domain d6wdsa_: 6wds A: [389531] Other proteins in same PDB: d6wdsh_, d6wdsl1, d6wdsl2 automated match to d4wm8a_ |
Domain d6wdsc_: 6wds C: [389554] Other proteins in same PDB: d6wdsh_, d6wdsl1, d6wdsl2 automated match to d4wm8c_ |
Domain d6wdta_: 6wdt A: [389585] Other proteins in same PDB: d6wdth1, d6wdth2, d6wdtl_ automated match to d4wm8a_ |
Domain d6wdtc_: 6wdt C: [389528] Other proteins in same PDB: d6wdth1, d6wdth2, d6wdtl_ automated match to d4wm8c_ |
Equine rhinitis a virus [TaxId:47000] [255665] (1 PDB entry) |
Domain d2ws93_: 2ws9 3: [244274] automated match to d1cov3_ |
Foot-and-mouth disease virus [TaxId:12122] [255672] (1 PDB entry) |
Domain d2wzr1_: 2wzr 1: [244362] Other proteins in same PDB: d2wzr3_ automated match to d1fmd1_ |
Human coxsackievirus a16 [TaxId:31704] [256333] (2 PDB entries) |
Domain d4jgya_: 4jgy A: [252939] automated match to d1cov1_ |
Domain d4jgyb_: 4jgy B: [262755] automated match to d4rqpc_ |
Domain d4jgyc_: 4jgy C: [252940] automated match to d1cov3_ |
Domain d4jgza_: 4jgz A: [252941] automated match to d1cov1_ |
Domain d4jgzb_: 4jgz B: [262756] automated match to d4rqpc_ |
Domain d4jgzc_: 4jgz C: [252942] automated match to d1cov3_ |
Human enterovirus 71 [TaxId:39054] [226325] (11 PDB entries) |
Domain d3vbfa_: 3vbf A: [201218] Other proteins in same PDB: d3vbfc_ automated match to d1d4m1_ complexed with amp, cl, k, na, sph |
Domain d3vbfb_: 3vbf B: [262349] Other proteins in same PDB: d3vbfc_ automated match to d4rqpc_ complexed with amp, cl, k, na, sph |
Domain d3vbha_: 3vbh A: [217747] Other proteins in same PDB: d3vbhc_ automated match to d1d4m1_ complexed with cl, k, na, sph |
Domain d3vbhb_: 3vbh B: [262350] Other proteins in same PDB: d3vbhc_ automated match to d4rqpc_ complexed with cl, k, na, sph |
Domain d3vboc_: 3vbo C: [217749] automated match to d3cjib_ complexed with na |
Domain d3vbsa_: 3vbs A: [250356] automated match to d3vbha_ complexed with sph |
Domain d3vbsb_: 3vbs B: [262352] automated match to d4rqpc_ complexed with sph |
Domain d3vbsc_: 3vbs C: [250357] automated match to d1cov3_ complexed with sph |
Domain d3zfea_: 3zfe A: [201312] Other proteins in same PDB: d3zfec_ automated match to d2plv1_ complexed with cl, na, sph |
Domain d3zfeb_: 3zfe B: [262506] Other proteins in same PDB: d3zfec_ automated match to d4rqpc_ complexed with cl, na, sph |
Domain d4cdqa_: 4cdq A: [236691] Other proteins in same PDB: d4cdqc_ automated match to d3vbfa_ complexed with 7vr, na |
Domain d4cdua_: 4cdu A: [236978] Other proteins in same PDB: d4cduc_ automated match to d4cdwa_ complexed with cl, na, ym2 |
Domain d4cdwa_: 4cdw A: [236690] Other proteins in same PDB: d4cdwc_ automated match to d3vbfa_ complexed with na, vr2 |
Domain d4cdxa_: 4cdx A: [236976] Other proteins in same PDB: d4cdxc_ automated match to d4cdwa_ complexed with jf0, na |
Domain d4cewa_: 4cew A: [236695] Other proteins in same PDB: d4cewc_ automated match to d3vbfa_ complexed with 7j5 |
Domain d4ceya_: 4cey A: [236694] Other proteins in same PDB: d4ceyc_ automated match to d3vbfa_ complexed with 906, na |
Human enterovirus d68 [TaxId:42789] [401999] (2 PDB entries) |
Domain d7ebza_: 7ebz A: [402030] Other proteins in same PDB: d7ebzf1 automated match to d4wm8a_ |
Domain d7ebzc_: 7ebz C: [402000] Other proteins in same PDB: d7ebzf1 automated match to d4wm8c_ |
Domain d7ec5a_: 7ec5 A: [402039] Other proteins in same PDB: d7ec5f1 automated match to d4wm8a_ |
Domain d7ec5c_: 7ec5 C: [402016] Other proteins in same PDB: d7ec5f1 automated match to d4wm8c_ |
Human rhinovirus a serotype 89 (strain 41467-gallo) [TaxId:650130] [373873] (1 PDB entry) |
Domain d6sk7a_: 6sk7 A: [373874] Other proteins in same PDB: d6sk7c_ automated match to d1d4m1_ |
Murine norovirus 1 [TaxId:223997] [372678] (4 PDB entries) |
Domain d6p4ja_: 6p4j A: [372733] automated match to d1ihmb_ complexed with cho |
Domain d6p4jb_: 6p4j B: [372679] automated match to d1ihmb_ complexed with cho |
Domain d6p4jc_: 6p4j C: [372763] automated match to d1ihmb_ complexed with cho |
Domain d6p4ka_: 6p4k A: [372702] automated match to d1ihmb_ complexed with tch |
Domain d6p4kb_: 6p4k B: [372745] automated match to d1ihmb_ complexed with tch |
Domain d6p4kc_: 6p4k C: [372681] automated match to d1ihmb_ complexed with tch |
Domain d6p4la_: 6p4l A: [372686] automated match to d1ihmb_ |
Domain d6p4lb_: 6p4l B: [372709] automated match to d1ihmb_ |
Domain d6p4lc_: 6p4l C: [372685] automated match to d1ihmb_ |
Domain d6s6la_: 6s6l A: [385523] automated match to d1ihmb_ |
Domain d6s6lb_: 6s6l B: [385542] automated match to d1ihmb_ |
Domain d6s6lc_: 6s6l C: [385536] automated match to d1ihmb_ |
Murine norovirus gv/cr10/2005/usa [TaxId:463724] [347267] (1 PDB entry) |
Domain d5or7a_: 5or7 A: [347268] Other proteins in same PDB: d5or7c_ automated match to d1ihmb_ complexed with na |
Domain d5or7b_: 5or7 B: [347315] Other proteins in same PDB: d5or7c_ automated match to d1ihmb_ complexed with na |
Rhinovirus c [TaxId:463676] [319565] (2 PDB entries) |
Domain d5jzgb_: 5jzg B: [319583] automated match to d1d4m3_ |
Domain d5jzgc_: 5jzg C: [319566] automated match to d1pov0_ |
Domain d5k0ua_: 5k0u A: [319582] automated match to d1k5ma_ |
Domain d5k0ub_: 5k0u B: [319608] automated match to d1d4m3_ |
Ryegrass mottle virus [TaxId:119910] [225341] (1 PDB entry) |
Domain d2izwa_: 2izw A: [230869] automated match to d2izwc_ |
Domain d2izwb_: 2izw B: [230870] automated match to d2izwc_ |
Domain d2izwc_: 2izw C: [204914] automated match to d1smvc_ |
Seneca valley virus [TaxId:390157] [188689] (3 PDB entries) |
Domain d3cjia_: 3cji A: [199192] automated match to d1tme1_ complexed with ca |
Domain d3cjib_: 3cji B: [173278] automated match to d2mev3_ complexed with ca |
Domain d6adma_: 6adm A: [364358] Other proteins in same PDB: d6admr1, d6admr2 automated match to d3cjia_ complexed with mg |
Domain d6admc_: 6adm C: [364342] Other proteins in same PDB: d6admr1, d6admr2 automated match to d3cjib_ complexed with mg |
Domain d6adsa_: 6ads A: [364350] automated match to d3cjia_ |
Domain d6adsc_: 6ads C: [364344] automated match to d3cjib_ |
Senecavirus a [TaxId:390157] [378534] (1 PDB entry) |
Domain d6adlc_: 6adl C: [378536] Other proteins in same PDB: d6adlr1, d6adlr2 automated match to d3cjib_ complexed with mg |
Snow mountain virus [TaxId:52276] [371166] (2 PDB entries) |
Domain d6otfa_: 6otf A: [371195] automated match to d1ihmb_ complexed with zn |
Domain d6otfb_: 6otf B: [371201] automated match to d1ihmb_ complexed with zn |
Domain d6otfc_: 6otf C: [371167] automated match to d1ihmb_ complexed with zn |
Domain d6ouca_: 6ouc A: [377129] automated match to d1ihmb_ complexed with zn |
Timeline for Protein automated matches from b.121.4.0: automated matches: