Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2352458Class b: All beta proteins [48724] (178 folds)
  3. 2430785Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2431062Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) (S)
  5. 2431815Family b.121.4.0: automated matches [191569] (1 protein)
    not a true family
  6. 2431816Protein automated matches [190988] (22 species)
    not a true protein

Species:

  1. 2431817Aichivirus a [TaxId:72149] [312940] (1 PDB entry)
  2. 2431819Bovine enterovirus (strain vg-5-27) [TaxId:12065] [395796] (2 PDB entries)
    1. Domain for 6thd:
    2. Domain for 6thn:
  3. 2431822Coxsackievirus a10 [TaxId:42769] [359971] (7 PDB entries)
    1. Domains for 6aks:
      1. 2431833Domain d6aksa_: 6aks A: [362070]
        Other proteins in same PDB: d6aksc_
        automated match to d4cdqa_
        complexed with sph
      2. 2431834Domain d6aksb_: 6aks B: [362000]
        Other proteins in same PDB: d6aksc_
        automated match to d4jgyb_
        complexed with sph
    2. Domain for 6akt:
    3. Domain for 6aku:
    4. Domains for 6iij:
      1. 2431831Domain d6iija_: 6iij A: [359972]
        Other proteins in same PDB: d6iijc_
        automated match to d4cdqa_
        complexed with sph
      2. 2431832Domain d6iijb_: 6iij B: [359995]
        Other proteins in same PDB: d6iijc_
        automated match to d4jgyb_
        complexed with sph
    5. Domains for 7bzn:
      1. 2431829Domain d7bzna_: 7bzn A: [389828]
        Other proteins in same PDB: d7bznc_
        automated match to d4cdqa_
        complexed with sph
      2. 2431830Domain d7bznb_: 7bzn B: [389744]
        Other proteins in same PDB: d7bznc_
        automated match to d4jgyb_
        complexed with sph
    6. Domains for 7bzt:
      1. 2431824Domain d7bzta_: 7bzt A: [389728]
        Other proteins in same PDB: d7bztc_
        automated match to d4cdqa_
        complexed with nag, sph
      2. 2431825Domain d7bztb_: 7bzt B: [389857]
        Other proteins in same PDB: d7bztc_
        automated match to d4jgyb_
        complexed with nag, sph
    7. Domains for 7bzu:
      1. 2431826Domain d7bzua_: 7bzu A: [389742]
        Other proteins in same PDB: d7bzuc_
        automated match to d4cdqa_
        complexed with nag
      2. 2431827Domain d7bzub_: 7bzu B: [389797]
        Other proteins in same PDB: d7bzuc_
        automated match to d4jgyb_
        complexed with nag
  4. 2431835Coxsackievirus a16 (strain tainan/5079/98) [TaxId:231417] [277502] (1 PDB entry)
  5. 2431837Coxsackievirus a16 [TaxId:31704] [276271] (7 PDB entries)
    1. Domains for 5abj:
      1. 2431843Domain d5abja_: 5abj A: [276643]
        Other proteins in same PDB: d5abjc_
        automated match to d4ceya_
        complexed with cl, na, ym2
      2. 2431844Domain d5abjb_: 5abj B: [276642]
        Other proteins in same PDB: d5abjc_
        automated match to d4jgyb_
        complexed with cl, na, ym2
    2. Domains for 5c4w:
      1. 2431838Domain d5c4wa_: 5c4w A: [276273]
        Other proteins in same PDB: d5c4wc_
        automated match to d4ceya_
        complexed with cl, k, na, sph
      2. 2431839Domain d5c4wb_: 5c4w B: [276272]
        Other proteins in same PDB: d5c4wc_
        automated match to d4jgyb_
        complexed with cl, k, na, sph
    3. Domain for 5c9a:
    4. Domains for 6lhk:
      1. 2431840Domain d6lhka_: 6lhk A: [379823]
        Other proteins in same PDB: d6lhkc_
        automated match to d5c8ca_
        complexed with sph
      2. 2431841Domain d6lhkb_: 6lhk B: [379788]
        Other proteins in same PDB: d6lhkc_
        automated match to d5abjb_
        complexed with sph
    5. Domain for 6lhl:
    6. Domain for 6lho:
    7. Domains for 6lhq:
      1. 2431846Domain d6lhqa_: 6lhq A: [379793]
        Other proteins in same PDB: d6lhqc_, d6lhqh_, d6lhql_
        automated match to d5c8ca_
        complexed with sph
      2. 2431847Domain d6lhqb_: 6lhq B: [379775]
        Other proteins in same PDB: d6lhqc_, d6lhqh_, d6lhql_
        automated match to d5abjb_
        complexed with sph
  6. 2431849Coxsackievirus a6 [TaxId:86107] [339715] (1 PDB entry)
  7. 2431852Echovirus e11 [TaxId:12078] [390854] (4 PDB entries)
    1. Domain for 6lap:
    2. Domain for 6lb1:
    3. Domain for 6lbo:
    4. Domain for 6lbq:
  8. 2431857Enterovirus a71 [TaxId:39054] [261947] (13 PDB entries)
    1. Domain for 3vbo:
    2. Domain for 4cdq:
    3. Domain for 4cdu:
    4. Domain for 4cdw:
    5. Domain for 4cdx:
    6. Domain for 4cew:
    7. Domain for 4cey:
    8. Domains for 4rqp:
      1. 2431874Domain d4rqpc_: 4rqp C: [261948]
        Other proteins in same PDB: d4rqpb_, d4rqpf_, d4rqpj_, d4rqpn_, d4rqpr_
        automated match to d1pov0_
      2. 2431875Domain d4rqpg_: 4rqp G: [261951]
        Other proteins in same PDB: d4rqpb_, d4rqpf_, d4rqpj_, d4rqpn_, d4rqpr_
        automated match to d1pov0_
      3. 2431876Domain d4rqpk_: 4rqp K: [261956]
        Other proteins in same PDB: d4rqpb_, d4rqpf_, d4rqpj_, d4rqpn_, d4rqpr_
        automated match to d1pov0_
      4. 2431877Domain d4rqpo_: 4rqp O: [261967]
        Other proteins in same PDB: d4rqpb_, d4rqpf_, d4rqpj_, d4rqpn_, d4rqpr_
        automated match to d1pov0_
    9. Domains for 6uh1:
      1. 2431872Domain d6uh1a_: 6uh1 A: [378502]
        Other proteins in same PDB: d6uh1c_
        automated match to d4ceya_
        complexed with sph
      2. 2431873Domain d6uh1b_: 6uh1 B: [378514]
        Other proteins in same PDB: d6uh1c_
        automated match to d3zfeb_
        complexed with sph
    10. Domains for 6uh6:
      1. 2431867Domain d6uh6a_: 6uh6 A: [378479]
        Other proteins in same PDB: d6uh6c_
        automated match to d4ceya_
        complexed with sph
      2. 2431868Domain d6uh6b_: 6uh6 B: [378486]
        Other proteins in same PDB: d6uh6c_
        automated match to d3zfeb_
        complexed with sph
    11. Domains for 6uh7:
      1. 2431864Domain d6uh7a_: 6uh7 A: [378492]
        Other proteins in same PDB: d6uh7c_
        automated match to d4ceya_
        complexed with sph
      2. 2431865Domain d6uh7b_: 6uh7 B: [378503]
        Other proteins in same PDB: d6uh7c_
        automated match to d3zfeb_
        complexed with sph
    12. Domains for 6z3p:
      1. 2431858Domain d6z3pa_: 6z3p A: [393805]
        Other proteins in same PDB: d6z3pc_, d6z3pl_
        automated match to d4ceya_
        complexed with sph
      2. 2431859Domain d6z3pb_: 6z3p B: [393821]
        Other proteins in same PDB: d6z3pc_, d6z3pl_
        automated match to d3zfeb_
        complexed with sph
    13. Domains for 6z3q:
      1. 2431860Domain d6z3qa_: 6z3q A: [393806]
        Other proteins in same PDB: d6z3qc_, d6z3ql_
        automated match to d4ceya_
        complexed with sph
      2. 2431861Domain d6z3qb_: 6z3q B: [393819]
        Other proteins in same PDB: d6z3qc_, d6z3ql_
        automated match to d3zfeb_
        complexed with sph
  9. 2431879Enterovirus d68 [TaxId:42789] [269068] (15 PDB entries)
    1. Domains for 4wm7:
      1. 2431890Domain d4wm7a_: 4wm7 A: [269069]
        automated match to d1h8ta_
        complexed with w11
      2. 2431891Domain d4wm7c_: 4wm7 C: [269070]
        automated match to d3vbhc_
        complexed with w11
    2. Domains for 4wm8:
      1. 2431880Domain d4wm8a_: 4wm8 A: [269072]
        automated match to d1h8ta_
        complexed with dka
      2. 2431881Domain d4wm8c_: 4wm8 C: [269073]
        automated match to d3vbhc_
        complexed with dka
    3. Domains for 5bnn:
      1. 2431888Domain d5bnna_: 5bnn A: [279415]
        automated match to d1h8ta_
        complexed with 4u0
      2. 2431889Domain d5bnnc_: 5bnn C: [279414]
        automated match to d3vbhc_
        complexed with 4u0
    4. Domains for 5bno:
      1. 2431886Domain d5bnoa_: 5bno A: [279409]
        automated match to d1h8ta_
        complexed with 4u1
      2. 2431887Domain d5bnoc_: 5bno C: [279413]
        automated match to d3vbhc_
        complexed with 4u1
    5. Domains for 5bnp:
      1. 2431884Domain d5bnpa_: 5bnp A: [279411]
        automated match to d1h8ta_
        complexed with 4u2
      2. 2431885Domain d5bnpc_: 5bnp C: [279412]
        automated match to d3vbhc_
        complexed with 4u2
    6. Domain for 6cs4:
    7. Domains for 6csg:
      1. 2431882Domain d6csga_: 6csg A: [361359]
        automated match to d4wm8a_
      2. 2431883Domain d6csgb_: 6csg B: [361360]
        automated match to d4wm8c_
    8. Domain for 6csh:
    9. Domains for 6cv1:
      1. 2431895Domain d6cv1a_: 6cv1 A: [371821]
        automated match to d4wm8a_
      2. 2431896Domain d6cv1b_: 6cv1 B: [371808]
        automated match to d4wm8c_
    10. Domains for 6cv2:
      1. 2431899Domain d6cv2a_: 6cv2 A: [371807]
        automated match to d4wm8a_
      2. 2431900Domain d6cv2b_: 6cv2 B: [371806]
        automated match to d4wm8c_
    11. Domain for 6cv4:
    12. Domains for 6cv5:
      1. 2431897Domain d6cv5a_: 6cv5 A: [371824]
        automated match to d4wm8a_
      2. 2431898Domain d6cv5b_: 6cv5 B: [371803]
        automated match to d4wm8c_
    13. Domains for 6cvb:
      1. 2431892Domain d6cvba_: 6cvb A: [371804]
        automated match to d4wm8a_
        complexed with 4u1
      2. 2431893Domain d6cvbb_: 6cvb B: [371805]
        automated match to d4wm8c_
        complexed with 4u1
    14. Domains for 6wds:
      1. 2431903Domain d6wdsa_: 6wds A: [389531]
        Other proteins in same PDB: d6wdsh_, d6wdsl1, d6wdsl2
        automated match to d4wm8a_
      2. 2431904Domain d6wdsc_: 6wds C: [389554]
        Other proteins in same PDB: d6wdsh_, d6wdsl1, d6wdsl2
        automated match to d4wm8c_
    15. Domains for 6wdt:
      1. 2431905Domain d6wdta_: 6wdt A: [389585]
        Other proteins in same PDB: d6wdth1, d6wdth2, d6wdtl_
        automated match to d4wm8a_
      2. 2431906Domain d6wdtc_: 6wdt C: [389528]
        Other proteins in same PDB: d6wdth1, d6wdth2, d6wdtl_
        automated match to d4wm8c_
  10. 2431907Equine rhinitis a virus [TaxId:47000] [255665] (1 PDB entry)
  11. 2431909Foot-and-mouth disease virus [TaxId:12122] [255672] (1 PDB entry)
  12. 2431911Human coxsackievirus a16 [TaxId:31704] [256333] (2 PDB entries)
    1. Domains for 4jgy:
      1. 2431912Domain d4jgya_: 4jgy A: [252939]
        automated match to d1cov1_
      2. 2431913Domain d4jgyb_: 4jgy B: [262755]
        automated match to d4rqpc_
      3. 2431914Domain d4jgyc_: 4jgy C: [252940]
        automated match to d1cov3_
    2. Domains for 4jgz:
      1. 2431915Domain d4jgza_: 4jgz A: [252941]
        automated match to d1cov1_
      2. 2431916Domain d4jgzb_: 4jgz B: [262756]
        automated match to d4rqpc_
      3. 2431917Domain d4jgzc_: 4jgz C: [252942]
        automated match to d1cov3_
  13. 2431918Human enterovirus 71 [TaxId:39054] [226325] (11 PDB entries)
    1. Domains for 3vbf:
      1. 2431921Domain d3vbfa_: 3vbf A: [201218]
        Other proteins in same PDB: d3vbfc_
        automated match to d1d4m1_
        complexed with amp, cl, k, na, sph
      2. 2431922Domain d3vbfb_: 3vbf B: [262349]
        Other proteins in same PDB: d3vbfc_
        automated match to d4rqpc_
        complexed with amp, cl, k, na, sph
    2. Domains for 3vbh:
      1. 2431919Domain d3vbha_: 3vbh A: [217747]
        Other proteins in same PDB: d3vbhc_
        automated match to d1d4m1_
        complexed with cl, k, na, sph
      2. 2431920Domain d3vbhb_: 3vbh B: [262350]
        Other proteins in same PDB: d3vbhc_
        automated match to d4rqpc_
        complexed with cl, k, na, sph
    3. Domain for 3vbo:
    4. Domains for 3vbs:
      1. 2431927Domain d3vbsa_: 3vbs A: [250356]
        automated match to d3vbha_
        complexed with sph
      2. 2431928Domain d3vbsb_: 3vbs B: [262352]
        automated match to d4rqpc_
        complexed with sph
      3. 2431929Domain d3vbsc_: 3vbs C: [250357]
        automated match to d1cov3_
        complexed with sph
    5. Domains for 3zfe:
      1. 2431923Domain d3zfea_: 3zfe A: [201312]
        Other proteins in same PDB: d3zfec_
        automated match to d2plv1_
        complexed with cl, na, sph
      2. 2431924Domain d3zfeb_: 3zfe B: [262506]
        Other proteins in same PDB: d3zfec_
        automated match to d4rqpc_
        complexed with cl, na, sph
    6. Domain for 4cdq:
    7. Domain for 4cdu:
    8. Domain for 4cdw:
    9. Domain for 4cdx:
    10. Domain for 4cew:
    11. Domain for 4cey:
  14. 2431935Human enterovirus d68 [TaxId:42789] [401999] (2 PDB entries)
    1. Domains for 7ebz:
      1. 2431938Domain d7ebza_: 7ebz A: [402030]
        Other proteins in same PDB: d7ebzf1
        automated match to d4wm8a_
      2. 2431939Domain d7ebzc_: 7ebz C: [402000]
        Other proteins in same PDB: d7ebzf1
        automated match to d4wm8c_
    2. Domains for 7ec5:
      1. 2431936Domain d7ec5a_: 7ec5 A: [402039]
        Other proteins in same PDB: d7ec5f1
        automated match to d4wm8a_
      2. 2431937Domain d7ec5c_: 7ec5 C: [402016]
        Other proteins in same PDB: d7ec5f1
        automated match to d4wm8c_
  15. 2431940Human rhinovirus a serotype 89 (strain 41467-gallo) [TaxId:650130] [373873] (1 PDB entry)
  16. 2431942Murine norovirus 1 [TaxId:223997] [372678] (4 PDB entries)
    1. Domains for 6p4j:
      1. 2431949Domain d6p4ja_: 6p4j A: [372733]
        automated match to d1ihmb_
        complexed with cho
      2. 2431950Domain d6p4jb_: 6p4j B: [372679]
        automated match to d1ihmb_
        complexed with cho
      3. 2431951Domain d6p4jc_: 6p4j C: [372763]
        automated match to d1ihmb_
        complexed with cho
    2. Domains for 6p4k:
      1. 2431952Domain d6p4ka_: 6p4k A: [372702]
        automated match to d1ihmb_
        complexed with tch
      2. 2431953Domain d6p4kb_: 6p4k B: [372745]
        automated match to d1ihmb_
        complexed with tch
      3. 2431954Domain d6p4kc_: 6p4k C: [372681]
        automated match to d1ihmb_
        complexed with tch
    3. Domains for 6p4l:
      1. 2431946Domain d6p4la_: 6p4l A: [372686]
        automated match to d1ihmb_
      2. 2431947Domain d6p4lb_: 6p4l B: [372709]
        automated match to d1ihmb_
      3. 2431948Domain d6p4lc_: 6p4l C: [372685]
        automated match to d1ihmb_
    4. Domains for 6s6l:
      1. 2431943Domain d6s6la_: 6s6l A: [385523]
        automated match to d1ihmb_
      2. 2431944Domain d6s6lb_: 6s6l B: [385542]
        automated match to d1ihmb_
      3. 2431945Domain d6s6lc_: 6s6l C: [385536]
        automated match to d1ihmb_
  17. 2431955Murine norovirus gv/cr10/2005/usa [TaxId:463724] [347267] (1 PDB entry)
  18. 2431958Rhinovirus c [TaxId:463676] [319565] (2 PDB entries)
    1. Domains for 5jzg:
      1. 2431961Domain d5jzgb_: 5jzg B: [319583]
        automated match to d1d4m3_
      2. 2431962Domain d5jzgc_: 5jzg C: [319566]
        automated match to d1pov0_
    2. Domains for 5k0u:
      1. 2431959Domain d5k0ua_: 5k0u A: [319582]
        automated match to d1k5ma_
      2. 2431960Domain d5k0ub_: 5k0u B: [319608]
        automated match to d1d4m3_
  19. 2431963Ryegrass mottle virus [TaxId:119910] [225341] (1 PDB entry)
  20. 2431967Seneca valley virus [TaxId:390157] [188689] (3 PDB entries)
    1. Domains for 3cji:
      1. 2431968Domain d3cjia_: 3cji A: [199192]
        automated match to d1tme1_
        complexed with ca
      2. 2431969Domain d3cjib_: 3cji B: [173278]
        automated match to d2mev3_
        complexed with ca
    2. Domains for 6adm:
      1. 2431970Domain d6adma_: 6adm A: [364358]
        Other proteins in same PDB: d6admr1, d6admr2
        automated match to d3cjia_
        complexed with mg
      2. 2431971Domain d6admc_: 6adm C: [364342]
        Other proteins in same PDB: d6admr1, d6admr2
        automated match to d3cjib_
        complexed with mg
    3. Domains for 6ads:
      1. 2431972Domain d6adsa_: 6ads A: [364350]
        automated match to d3cjia_
      2. 2431973Domain d6adsc_: 6ads C: [364344]
        automated match to d3cjib_
  21. 2431974Senecavirus a [TaxId:390157] [378534] (1 PDB entry)
  22. 2431976Snow mountain virus [TaxId:52276] [371166] (2 PDB entries)
    1. Domains for 6otf:
      1. 2431978Domain d6otfa_: 6otf A: [371195]
        automated match to d1ihmb_
        complexed with zn
      2. 2431979Domain d6otfb_: 6otf B: [371201]
        automated match to d1ihmb_
        complexed with zn
      3. 2431980Domain d6otfc_: 6otf C: [371167]
        automated match to d1ihmb_
        complexed with zn
    2. Domain for 6ouc:

More info for Protein automated matches from b.121.4.0: automated matches

Timeline for Protein automated matches from b.121.4.0: automated matches: