Class b: All beta proteins [48724] (176 folds) |
Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies |
Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) |
Family b.121.4.0: automated matches [191569] (1 protein) not a true family |
Protein automated matches [190988] (10 species) not a true protein |
Coxsackievirus a16 (strain tainan/5079/98) [TaxId:231417] [277502] (1 PDB entry) |
Domain d5c8ca_: 5c8c A: [277503] Other proteins in same PDB: d5c8cc_ automated match to d4ceya_ complexed with cl, k, ste |
Coxsackievirus a16 [TaxId:31704] [276271] (3 PDB entries) |
Domain d5abja_: 5abj A: [276643] Other proteins in same PDB: d5abjc_ automated match to d4ceya_ complexed with cl, na, ym2 |
Domain d5abjb_: 5abj B: [276642] Other proteins in same PDB: d5abjc_ automated match to d4jgyb_ complexed with cl, na, ym2 |
Domain d5c4wa_: 5c4w A: [276273] Other proteins in same PDB: d5c4wc_ automated match to d4ceya_ complexed with cl, k, na, sph |
Domain d5c4wb_: 5c4w B: [276272] Other proteins in same PDB: d5c4wc_ automated match to d4jgyb_ complexed with cl, k, na, sph |
Domain d5c9aa_: 5c9a A: [276276] Other proteins in same PDB: d5c9ac_ automated match to d4ceya_ complexed with cl, k, sph |
Enterovirus a71 [TaxId:39054] [261947] (8 PDB entries) |
Domain d3vbob_: 3vbo B: [262351] automated match to d4rqpc_ complexed with na |
Domain d4cdqb_: 4cdq B: [262566] Other proteins in same PDB: d4cdqc_ automated match to d4rqpc_ complexed with 7vr, na |
Domain d4cdub_: 4cdu B: [262567] Other proteins in same PDB: d4cduc_ automated match to d4rqpc_ complexed with cl, na, ym2 |
Domain d4cdwb_: 4cdw B: [262568] Other proteins in same PDB: d4cdwc_ automated match to d4rqpc_ complexed with na, vr2 |
Domain d4cdxb_: 4cdx B: [262569] Other proteins in same PDB: d4cdxc_ automated match to d4rqpc_ complexed with jf0, na |
Domain d4cewb_: 4cew B: [262570] Other proteins in same PDB: d4cewc_ automated match to d4rqpc_ complexed with 7j5 |
Domain d4ceyb_: 4cey B: [262571] Other proteins in same PDB: d4ceyc_ automated match to d4rqpc_ complexed with 906, na |
Domain d4rqpc_: 4rqp C: [261948] Other proteins in same PDB: d4rqpb_, d4rqpf_, d4rqpj_, d4rqpn_, d4rqpr_ automated match to d1pov0_ |
Domain d4rqpg_: 4rqp G: [261951] Other proteins in same PDB: d4rqpb_, d4rqpf_, d4rqpj_, d4rqpn_, d4rqpr_ automated match to d1pov0_ |
Domain d4rqpk_: 4rqp K: [261956] Other proteins in same PDB: d4rqpb_, d4rqpf_, d4rqpj_, d4rqpn_, d4rqpr_ automated match to d1pov0_ |
Domain d4rqpo_: 4rqp O: [261967] Other proteins in same PDB: d4rqpb_, d4rqpf_, d4rqpj_, d4rqpn_, d4rqpr_ automated match to d1pov0_ |
Enterovirus d68 [TaxId:42789] [269068] (5 PDB entries) |
Domain d4wm7a_: 4wm7 A: [269069] automated match to d1h8ta_ complexed with w11 |
Domain d4wm7c_: 4wm7 C: [269070] automated match to d3vbhc_ complexed with w11 |
Domain d4wm8a_: 4wm8 A: [269072] automated match to d1h8ta_ complexed with dka |
Domain d4wm8c_: 4wm8 C: [269073] automated match to d3vbhc_ complexed with dka |
Domain d5bnna_: 5bnn A: [279415] automated match to d1h8ta_ complexed with 4u0 |
Domain d5bnnc_: 5bnn C: [279414] automated match to d3vbhc_ complexed with 4u0 |
Domain d5bnoa_: 5bno A: [279409] automated match to d1h8ta_ complexed with 4u1 |
Domain d5bnoc_: 5bno C: [279413] automated match to d3vbhc_ complexed with 4u1 |
Domain d5bnpa_: 5bnp A: [279411] automated match to d1h8ta_ complexed with 4u2 |
Domain d5bnpc_: 5bnp C: [279412] automated match to d3vbhc_ complexed with 4u2 |
Equine rhinitis a virus [TaxId:47000] [255665] (1 PDB entry) |
Domain d2ws93_: 2ws9 3: [244274] automated match to d1cov3_ |
Foot-and-mouth disease virus [TaxId:12122] [255672] (1 PDB entry) |
Domain d2wzr1_: 2wzr 1: [244362] Other proteins in same PDB: d2wzr3_ automated match to d1fmd1_ |
Human coxsackievirus a16 [TaxId:31704] [256333] (2 PDB entries) |
Domain d4jgya_: 4jgy A: [252939] automated match to d1cov1_ |
Domain d4jgyb_: 4jgy B: [262755] automated match to d4rqpc_ |
Domain d4jgyc_: 4jgy C: [252940] automated match to d1cov3_ |
Domain d4jgza_: 4jgz A: [252941] automated match to d1cov1_ |
Domain d4jgzb_: 4jgz B: [262756] automated match to d4rqpc_ |
Domain d4jgzc_: 4jgz C: [252942] automated match to d1cov3_ |
Human enterovirus 71 [TaxId:39054] [226325] (11 PDB entries) |
Domain d3vbfa_: 3vbf A: [201218] Other proteins in same PDB: d3vbfc_ automated match to d1d4m1_ complexed with amp, cl, k, na, sph |
Domain d3vbfb_: 3vbf B: [262349] Other proteins in same PDB: d3vbfc_ automated match to d4rqpc_ complexed with amp, cl, k, na, sph |
Domain d3vbha_: 3vbh A: [217747] Other proteins in same PDB: d3vbhc_ automated match to d1d4m1_ complexed with cl, k, na, sph |
Domain d3vbhb_: 3vbh B: [262350] Other proteins in same PDB: d3vbhc_ automated match to d4rqpc_ complexed with cl, k, na, sph |
Domain d3vboc_: 3vbo C: [217749] automated match to d3cjib_ complexed with na |
Domain d3vbsa_: 3vbs A: [250356] automated match to d3vbha_ complexed with sph |
Domain d3vbsb_: 3vbs B: [262352] automated match to d4rqpc_ complexed with sph |
Domain d3vbsc_: 3vbs C: [250357] automated match to d1cov3_ complexed with sph |
Domain d3zfea_: 3zfe A: [201312] Other proteins in same PDB: d3zfec_ automated match to d2plv1_ complexed with cl, na, sph |
Domain d3zfeb_: 3zfe B: [262506] Other proteins in same PDB: d3zfec_ automated match to d4rqpc_ complexed with cl, na, sph |
Domain d4cdqa_: 4cdq A: [236691] Other proteins in same PDB: d4cdqc_ automated match to d3vbfa_ complexed with 7vr, na |
Domain d4cdua_: 4cdu A: [236978] Other proteins in same PDB: d4cduc_ automated match to d4cdwa_ complexed with cl, na, ym2 |
Domain d4cdwa_: 4cdw A: [236690] Other proteins in same PDB: d4cdwc_ automated match to d3vbfa_ complexed with na, vr2 |
Domain d4cdxa_: 4cdx A: [236976] Other proteins in same PDB: d4cdxc_ automated match to d4cdwa_ complexed with jf0, na |
Domain d4cewa_: 4cew A: [236695] Other proteins in same PDB: d4cewc_ automated match to d3vbfa_ complexed with 7j5 |
Domain d4ceya_: 4cey A: [236694] Other proteins in same PDB: d4ceyc_ automated match to d3vbfa_ complexed with 906, na |
Ryegrass mottle virus [TaxId:119910] [225341] (1 PDB entry) |
Domain d2izwa_: 2izw A: [230869] automated match to d2izwc_ |
Domain d2izwb_: 2izw B: [230870] automated match to d2izwc_ |
Domain d2izwc_: 2izw C: [204914] automated match to d1smvc_ |
Seneca valley virus [TaxId:390157] [188689] (1 PDB entry) |
Domain d3cjia_: 3cji A: [199192] automated match to d1tme1_ complexed with ca |
Domain d3cjib_: 3cji B: [173278] automated match to d2mev3_ complexed with ca |
Timeline for Protein automated matches from b.121.4.0: automated matches: