SCOPe 2.04: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.04
Class b: All beta proteins [48724] (176 folds)

Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)
Family b.121.4.0: automated matches [191569] (1 protein)
not a true family
Protein automated matches [190988] (7 species)
not a true protein

Species:

Enterovirus a71 [TaxId:39054] [261947] (1 PDB entry)
- Domains for 4rqp:
  1. Domain d4rqpc_: 4rqp C: [261948]
    Other proteins in same PDB: d4rqpb_, d4rqpf_, d4rqpj_, d4rqpn_, d4rqpr_
    automated match to d1pov0_
  2. Domain d4rqpg_: 4rqp G: [261951]
    Other proteins in same PDB: d4rqpb_, d4rqpf_, d4rqpj_, d4rqpn_, d4rqpr_
    automated match to d1pov0_
  3. Domain d4rqpk_: 4rqp K: [261956]
    Other proteins in same PDB: d4rqpb_, d4rqpf_, d4rqpj_, d4rqpn_, d4rqpr_
    automated match to d1pov0_
  4. Domain d4rqpo_: 4rqp O: [261967]
    Other proteins in same PDB: d4rqpb_, d4rqpf_, d4rqpj_, d4rqpn_, d4rqpr_
    automated match to d1pov0_
Equine rhinitis a virus [TaxId:47000] [255665] (1 PDB entry)
- Domain for 2ws9:
  - Domain d2ws93_: 2ws9 3: [244274]
    automated match to d1cov3_
Foot-and-mouth disease virus [TaxId:12122] [255672] (1 PDB entry)
- Domain for 2wzr:
  - Domain d2wzr1_: 2wzr 1: [244362]
    Other proteins in same PDB: d2wzr3_
    automated match to d1fmd1_
Human coxsackievirus a16 [TaxId:31704] [256333] (2 PDB entries)
1. Domains for 4jgy:
  1. Domain d4jgya_: 4jgy A: [252939]
    automated match to d1cov1_
  2. Domain d4jgyc_: 4jgy C: [252940]
    automated match to d1cov3_
2. Domains for 4jgz:
  1. Domain d4jgza_: 4jgz A: [252941]
    automated match to d1cov1_
  2. Domain d4jgzc_: 4jgz C: [252942]
    automated match to d1cov3_
Human enterovirus 71 [TaxId:39054] [226325] (11 PDB entries)
1. Domain for 3vbf:
  - Domain d3vbfa_: 3vbf A: [201218]
    Other proteins in same PDB: d3vbfc_
    automated match to d1d4m1_
    complexed with amp, cl, k, na, sph
2. Domain for 3vbh:
  - Domain d3vbha_: 3vbh A: [217747]
    Other proteins in same PDB: d3vbhc_
    automated match to d1d4m1_
    complexed with cl, k, na, sph
3. Domain for 3vbo:
  - Domain d3vboc_: 3vbo C: [217749]
    automated match to d3cjib_
    complexed with na
4. Domains for 3vbs:
  1. Domain d3vbsa_: 3vbs A: [250356]
    automated match to d3vbha_
    complexed with sph
  2. Domain d3vbsc_: 3vbs C: [250357]
    automated match to d1cov3_
    complexed with sph
5. Domain for 3zfe:
  - Domain d3zfea_: 3zfe A: [201312]
    Other proteins in same PDB: d3zfec_
    automated match to d2plv1_
    complexed with cl, na, sph
6. Domain for 4cdq:
  - Domain d4cdqa_: 4cdq A: [236691]
    Other proteins in same PDB: d4cdqc_
    automated match to d3vbfa_
    complexed with 7vr, na
7. Domain for 4cdu:
  - Domain d4cdua_: 4cdu A: [236978]
    Other proteins in same PDB: d4cduc_
    automated match to d4cdwa_
    complexed with cl, na, ym2
8. Domain for 4cdw:
  - Domain d4cdwa_: 4cdw A: [236690]
    Other proteins in same PDB: d4cdwc_
    automated match to d3vbfa_
    complexed with na, vr2
9. Domain for 4cdx:
  - Domain d4cdxa_: 4cdx A: [236976]
    Other proteins in same PDB: d4cdxc_
    automated match to d4cdwa_
    complexed with jf0, na
10. Domain for 4cew:
  - Domain d4cewa_: 4cew A: [236695]
    Other proteins in same PDB: d4cewc_
    automated match to d3vbfa_
    complexed with 7j5
11. Domain for 4cey:
  - Domain d4ceya_: 4cey A: [236694]
    Other proteins in same PDB: d4ceyc_
    automated match to d3vbfa_
    complexed with 906, na
Ryegrass mottle virus [TaxId:119910] [225341] (1 PDB entry)
- Domains for 2izw:
  1. Domain d2izwa_: 2izw A: [230869]
    automated match to d2izwc_
  2. Domain d2izwb_: 2izw B: [230870]
    automated match to d2izwc_
  3. Domain d2izwc_: 2izw C: [204914]
    automated match to d1smvc_
Seneca valley virus [TaxId:390157] [188689] (1 PDB entry)
- Domains for 3cji:
  1. Domain d3cjia_: 3cji A: [199192]
    automated match to d1tme1_
    complexed with ca
  2. Domain d3cjib_: 3cji B: [173278]
    automated match to d2mev3_
    complexed with ca

More info for Protein automated matches from b.121.4.0: automated matches

Timeline for Protein automated matches from b.121.4.0: automated matches:

Protein automated matches from b.121.4.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from b.121.4.0: automated matches appears in SCOPe 2.03
Protein automated matches from b.121.4.0: automated matches appears in SCOPe 2.05
Protein automated matches from b.121.4.0: automated matches appears in the current release, SCOPe 2.08