Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2968249Fold d.106: SCP-like [55717] (1 superfamily)
    alpha-beta(3)-(crossover)-beta-(alpha)-beta; 3 layers: a/b/a; antiparallel beta-sheet of 5 strands; order: 32145
  4. 2968250Superfamily d.106.1: SCP-like [55718] (5 families) (S)
  5. 2968313Family d.106.1.0: automated matches [191568] (1 protein)
    not a true family
  6. 2968314Protein automated matches [190987] (4 species)
    not a true protein

Species:

  1. 2968315Escherichia coli [TaxId:83333] [271890] (1 PDB entry)
  2. 2968318Pseudomonas sp. [TaxId:1007495] [226383] (3 PDB entries)
    1. Domains for 2yhe:
      1. 2968325Domain d2yhea2: 2yhe A:539-660 [207592]
        Other proteins in same PDB: d2yhea1, d2yhea3, d2yheb1, d2yheb3, d2yhec1, d2yhec3, d2yhed1, d2yhed3, d2yhee1, d2yhee3, d2yhef1, d2yhef3
        automated match to d2cfua1
        complexed with so4, zn
      2. 2968326Domain d2yheb2: 2yhe B:539-660 [207594]
        Other proteins in same PDB: d2yhea1, d2yhea3, d2yheb1, d2yheb3, d2yhec1, d2yhec3, d2yhed1, d2yhed3, d2yhee1, d2yhee3, d2yhef1, d2yhef3
        automated match to d2cfua1
        complexed with so4, zn
      3. 2968327Domain d2yhec2: 2yhe C:539-660 [207596]
        Other proteins in same PDB: d2yhea1, d2yhea3, d2yheb1, d2yheb3, d2yhec1, d2yhec3, d2yhed1, d2yhed3, d2yhee1, d2yhee3, d2yhef1, d2yhef3
        automated match to d2cfua1
        complexed with so4, zn
      4. 2968328Domain d2yhed2: 2yhe D:539-660 [207598]
        Other proteins in same PDB: d2yhea1, d2yhea3, d2yheb1, d2yheb3, d2yhec1, d2yhec3, d2yhed1, d2yhed3, d2yhee1, d2yhee3, d2yhef1, d2yhef3
        automated match to d2cfua1
        complexed with so4, zn
      5. 2968329Domain d2yhee2: 2yhe E:539-660 [207600]
        Other proteins in same PDB: d2yhea1, d2yhea3, d2yheb1, d2yheb3, d2yhec1, d2yhec3, d2yhed1, d2yhed3, d2yhee1, d2yhee3, d2yhef1, d2yhef3
        automated match to d2cfua1
        complexed with so4, zn
      6. 2968330Domain d2yhef2: 2yhe F:539-660 [207602]
        Other proteins in same PDB: d2yhea1, d2yhea3, d2yheb1, d2yheb3, d2yhec1, d2yhec3, d2yhed1, d2yhed3, d2yhee1, d2yhee3, d2yhef1, d2yhef3
        automated match to d2cfua1
        complexed with so4, zn
    2. Domains for 4av7:
      1. 2968319Domain d4av7a2: 4av7 A:539-660 [251148]
        Other proteins in same PDB: d4av7a1, d4av7a3, d4av7b1, d4av7b3, d4av7c1, d4av7c3, d4av7d1, d4av7d3, d4av7e1, d4av7e3, d4av7f1, d4av7f3
        automated match to d4axha2
        complexed with so4, zn; mutant
      2. 2968320Domain d4av7b2: 4av7 B:539-660 [251150]
        Other proteins in same PDB: d4av7a1, d4av7a3, d4av7b1, d4av7b3, d4av7c1, d4av7c3, d4av7d1, d4av7d3, d4av7e1, d4av7e3, d4av7f1, d4av7f3
        automated match to d4axha2
        complexed with so4, zn; mutant
      3. 2968321Domain d4av7c2: 4av7 C:539-660 [251152]
        Other proteins in same PDB: d4av7a1, d4av7a3, d4av7b1, d4av7b3, d4av7c1, d4av7c3, d4av7d1, d4av7d3, d4av7e1, d4av7e3, d4av7f1, d4av7f3
        automated match to d4axha2
        complexed with so4, zn; mutant
      4. 2968322Domain d4av7d2: 4av7 D:539-660 [251154]
        Other proteins in same PDB: d4av7a1, d4av7a3, d4av7b1, d4av7b3, d4av7c1, d4av7c3, d4av7d1, d4av7d3, d4av7e1, d4av7e3, d4av7f1, d4av7f3
        automated match to d4axha2
        complexed with so4, zn; mutant
      5. 2968323Domain d4av7e2: 4av7 E:539-660 [251156]
        Other proteins in same PDB: d4av7a1, d4av7a3, d4av7b1, d4av7b3, d4av7c1, d4av7c3, d4av7d1, d4av7d3, d4av7e1, d4av7e3, d4av7f1, d4av7f3
        automated match to d4axha2
        complexed with so4, zn; mutant
      6. 2968324Domain d4av7f2: 4av7 F:539-660 [251158]
        Other proteins in same PDB: d4av7a1, d4av7a3, d4av7b1, d4av7b3, d4av7c1, d4av7c3, d4av7d1, d4av7d3, d4av7e1, d4av7e3, d4av7f1, d4av7f3
        automated match to d4axha2
        complexed with so4, zn; mutant
    3. Domains for 4axh:
      1. 2968331Domain d4axha2: 4axh A:539-660 [219192]
        Other proteins in same PDB: d4axha1, d4axhb1, d4axhb3
        automated match to d2cfua1
        complexed with so4, zn
      2. 2968332Domain d4axhb2: 4axh B:539-660 [219194]
        Other proteins in same PDB: d4axha1, d4axhb1, d4axhb3
        automated match to d2cfua1
        complexed with so4, zn
  3. 2968333Yarrowia lipolytica [TaxId:284591] [229842] (2 PDB entries)
    1. Domains for 4jgx:
      1. 2968336Domain d4jgxa_: 4jgx A: [229844]
        automated match to d1ikta_
        complexed with cit, plm
      2. 2968337Domain d4jgxb_: 4jgx B: [229843]
        automated match to d1ikta_
        complexed with cit, plm
    2. Domains for 6ovp:
      1. 2968334Domain d6ovpa_: 6ovp A: [385822]
        automated match to d4jgxb_
        complexed with po4
      2. 2968335Domain d6ovpb_: 6ovp B: [385825]
        automated match to d4jgxb_
        complexed with po4
  4. 2968338Yellow fever mosquito (Aedes aegypti) [TaxId:7159] [188685] (2 PDB entries)
    1. Domain for 3bkr:
    2. Domain for 3bks:

More info for Protein automated matches from d.106.1.0: automated matches

Timeline for Protein automated matches from d.106.1.0: automated matches: