Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2021373Class b: All beta proteins [48724] (177 folds)
  3. 2079733Fold b.81: Single-stranded left-handed beta-helix [51160] (4 superfamilies)
    superhelix turns are made of parallel beta-strands and (short) turns
  4. 2079734Superfamily b.81.1: Trimeric LpxA-like enzymes [51161] (9 families) (S)
    superhelical turns are made of three short strands; duplication: the sequence hexapeptide repeats correspond to individual strands
  5. 2080029Family b.81.1.0: automated matches [191560] (1 protein)
    not a true family
  6. 2080030Protein automated matches [190967] (30 species)
    not a true protein

Species:

  1. 2080031Acinetobacter baumannii [TaxId:470] [193329] (4 PDB entries)
    1. Domains for 4e6t:
      1. 2080033Domain d4e6ta1: 4e6t A:5-262 [251695]
        Other proteins in same PDB: d4e6ta2, d4e6tb2
        automated match to d4e6ua_
        complexed with flc
      2. 2080034Domain d4e6tb1: 4e6t B:4-262 [251696]
        Other proteins in same PDB: d4e6ta2, d4e6tb2
        automated match to d4e6ua_
        complexed with flc
      3. 2080035Domain d4e6tc_: 4e6t C: [251697]
        Other proteins in same PDB: d4e6ta2, d4e6tb2
        automated match to d4e6ua_
        complexed with flc
    2. Domain for 4e6u:
    3. Domains for 4m9c:
      1. 2080036Domain d4m9ca_: 4m9c A: [235549]
        automated match to d4m9cd_
      2. 2080037Domain d4m9cb_: 4m9c B: [235551]
        automated match to d4m9cd_
      3. 2080038Domain d4m9cc_: 4m9c C: [235548]
        automated match to d4m9cd_
      4. 2080039Domain d4m9cd_: 4m9c D: [228109]
        automated match to d2npoa1
      5. 2080040Domain d4m9ce_: 4m9c E: [235554]
        automated match to d4m9cd_
      6. 2080041Domain d4m9cf_: 4m9c F: [235553]
        automated match to d4m9cd_
    4. Domains for 5vmk:
      1. 2080042Domain d5vmka2: 5vmk A:249-450 [334703]
        Other proteins in same PDB: d5vmka1, d5vmkb1, d5vmkc1
        automated match to d3fwwa2
        complexed with cit, pg4, po4
      2. 2080043Domain d5vmkb2: 5vmk B:249-449 [334717]
        Other proteins in same PDB: d5vmka1, d5vmkb1, d5vmkc1
        automated match to d3fwwa2
        complexed with cit, pg4, po4
      3. 2080044Domain d5vmkc2: 5vmk C:249-450 [334769]
        Other proteins in same PDB: d5vmka1, d5vmkb1, d5vmkc1
        automated match to d3fwwa2
        complexed with cit, pg4, po4
  2. 2080045Anaplasma phagocytophilum [TaxId:212042] [225756] (1 PDB entry)
  3. 2080047Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [188916] (2 PDB entries)
    1. Domains for 3hjj:
      1. 2080048Domain d3hjja1: 3hjj A:1-187 [177610]
        Other proteins in same PDB: d3hjja2
        automated match to d1ocxa_
        complexed with acy, gol, so4
      2. 2080049Domain d3hjjb_: 3hjj B: [177611]
        Other proteins in same PDB: d3hjja2
        automated match to d1ocxa_
        complexed with acy, gol, so4
      3. 2080050Domain d3hjjc_: 3hjj C: [177612]
        Other proteins in same PDB: d3hjja2
        automated match to d1ocxa_
        complexed with acy, gol, so4
    2. Domains for 3igj:
      1. 2080051Domain d3igja_: 3igj A: [178307]
        Other proteins in same PDB: d3igjc2
        automated match to d1ocxa_
        complexed with aco, fmt, gol, so4
      2. 2080052Domain d3igjb_: 3igj B: [178308]
        Other proteins in same PDB: d3igjc2
        automated match to d1ocxa_
        complexed with aco, fmt, gol, so4
      3. 2080053Domain d3igjc1: 3igj C:1-187 [178309]
        Other proteins in same PDB: d3igjc2
        automated match to d1ocxa_
        complexed with aco, fmt, gol, so4
  4. 2080054Bacteroides fragilis [TaxId:272559] [272379] (2 PDB entries)
    1. Domains for 4r36:
      1. 2080057Domain d4r36a_: 4r36 A: [272382]
        automated match to d4e6ua_
        complexed with act, ca, pe5, pg0
      2. 2080058Domain d4r36b_: 4r36 B: [272383]
        automated match to d4e6ua_
        complexed with act, ca, pe5, pg0
    2. Domains for 4r37:
      1. 2080055Domain d4r37a_: 4r37 A: [272381]
        automated match to d4e6ua_
        complexed with act, ca, pe5, pg0, ud1
      2. 2080056Domain d4r37b_: 4r37 B: [272380]
        automated match to d4e6ua_
        complexed with act, ca, pe5, pg0, ud1
  5. 2080059Brucella abortus [TaxId:359391] [229708] (1 PDB entry)
  6. 2080066Brucella abortus [TaxId:430066] [237007] (2 PDB entries)
    1. Domains for 4hzc:
      1. 2080069Domain d4hzca_: 4hzc A: [237010]
        automated match to d3gvdi_
        complexed with 15p, cl, mg, trs
      2. 2080070Domain d4hzcb_: 4hzc B: [237009]
        automated match to d3gvdi_
        complexed with 15p, cl, mg, trs
      3. 2080071Domain d4hzcc_: 4hzc C: [237008]
        automated match to d3gvdi_
        complexed with 15p, cl, mg, trs
      4. 2080072Domain d4hzcd_: 4hzc D: [240226]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
      5. 2080073Domain d4hzce_: 4hzc E: [240227]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
      6. 2080074Domain d4hzcf_: 4hzc F: [240228]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
      7. 2080075Domain d4hzcg_: 4hzc G: [240229]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
      8. 2080076Domain d4hzch_: 4hzc H: [240230]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
      9. 2080077Domain d4hzci_: 4hzc I: [240231]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
      10. 2080078Domain d4hzcj_: 4hzc J: [240232]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
      11. 2080079Domain d4hzck_: 4hzc K: [240233]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
      12. 2080080Domain d4hzcl_: 4hzc L: [240234]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
    2. Domains for 4hzd:
      1. 2080067Domain d4hzda_: 4hzd A: [237011]
        automated match to d3gvdi_
        complexed with 15p, coa, mg
      2. 2080068Domain d4hzdb_: 4hzd B: [237012]
        automated match to d3gvdi_
        complexed with 15p, coa, mg
  7. 2080081Brucella melitensis [TaxId:359391] [225881] (1 PDB entry)
  8. 2080084Burkholderia thailandensis [TaxId:271848] [226377] (1 PDB entry)
  9. 2080091Campylobacter jejuni [TaxId:192222] [189681] (1 PDB entry)
  10. 2080093Clostridium difficile [TaxId:272563] [193268] (4 PDB entries)
    1. Domains for 3srt:
      1. 2080098Domain d3srta1: 3srt A:1-185 [216528]
        Other proteins in same PDB: d3srta2, d3srtb2
        automated match to d4isxa_
        complexed with gol
      2. 2080099Domain d3srtb1: 3srt B:1-185 [216529]
        Other proteins in same PDB: d3srta2, d3srtb2
        automated match to d4isxa_
        complexed with gol
    2. Domains for 4ebh:
      1. 2080100Domain d4ebha1: 4ebh A:1-185 [307288]
        Other proteins in same PDB: d4ebha2
        automated match to d3srtb_
        complexed with aco, mes
      2. 2080101Domain d4ebhb_: 4ebh B: [307290]
        Other proteins in same PDB: d4ebha2
        automated match to d3srtb_
        complexed with aco, mes
    3. Domains for 4isx:
      1. 2080102Domain d4isxa1: 4isx A:1-185 [193269]
        Other proteins in same PDB: d4isxa2
        automated match to d2p2oa_
        complexed with aco, mes
      2. 2080103Domain d4isxb_: 4isx B: [202675]
        Other proteins in same PDB: d4isxa2
        automated match to d4isxa_
        complexed with aco, mes
    4. Domains for 4mfg:
      1. 2080094Domain d4mfga1: 4mfg A:1-165 [235611]
        Other proteins in same PDB: d4mfga2, d4mfgb2, d4mfgc2, d4mfgd2
        automated match to d4mfgd_
        complexed with mg, ni
      2. 2080095Domain d4mfgb1: 4mfg B:1-165 [235613]
        Other proteins in same PDB: d4mfga2, d4mfgb2, d4mfgc2, d4mfgd2
        automated match to d4mfgd_
        complexed with mg, ni
      3. 2080096Domain d4mfgc1: 4mfg C:1-165 [235612]
        Other proteins in same PDB: d4mfga2, d4mfgb2, d4mfgc2, d4mfgd2
        automated match to d4mfgd_
        complexed with mg, ni
      4. 2080097Domain d4mfgd1: 4mfg D:1-165 [227805]
        Other proteins in same PDB: d4mfga2, d4mfgb2, d4mfgc2, d4mfgd2
        automated match to d1xhda_
        complexed with mg, ni
  11. 2080104Escherichia coli K-12 [TaxId:83333] [193604] (2 PDB entries)
    1. Domains for 3tio:
      1. 2080105Domain d3tioa_: 3tio A: [200826]
        automated match to d3tioc_
        complexed with po4, zn
      2. 2080106Domain d3tiob_: 3tio B: [200827]
        automated match to d3tioc_
        complexed with po4, zn
      3. 2080107Domain d3tioc_: 3tio C: [193605]
        automated match to d3r3ra_
        complexed with po4, zn
      4. 2080108Domain d3tiod_: 3tio D: [200828]
        automated match to d3tioc_
        complexed with po4, zn
      5. 2080109Domain d3tioe_: 3tio E: [200829]
        automated match to d3tioc_
        complexed with po4, zn
      6. 2080110Domain d3tiof_: 3tio F: [200830]
        automated match to d3tioc_
        complexed with po4, zn
    2. Domains for 3tis:
      1. 2080111Domain d3tisa_: 3tis A: [216828]
        automated match to d3tioc_
        complexed with zn
      2. 2080112Domain d3tisb_: 3tis B: [216829]
        automated match to d3tioc_
        complexed with zn
      3. 2080113Domain d3tisc_: 3tis C: [216830]
        automated match to d3tioc_
        complexed with zn
  12. 2080114Haemophilus influenzae [TaxId:727] [231321] (14 PDB entries)
    1. Domain for 2v0h:
    2. Domain for 2v0i:
    3. Domain for 2v0j:
    4. Domain for 2v0k:
    5. Domain for 2v0l:
    6. Domain for 2vd4:
    7. Domain for 2w0v:
    8. Domain for 2w0w:
    9. Domain for 4e1k:
    10. Domain for 4knr:
    11. Domain for 4knx:
    12. Domain for 4kpx:
    13. Domain for 4kpz:
    14. Domain for 4kql:
  13. 2080129Leptospira interrogans [TaxId:173] [188993] (3 PDB entries)
    1. Domains for 3hsq:
      1. 2080130Domain d3hsqa_: 3hsq A: [177816]
        automated match to d1lxaa_
      2. 2080131Domain d3hsqb_: 3hsq B: [177817]
        automated match to d1lxaa_
      3. 2080132Domain d3hsqc_: 3hsq C: [177818]
        automated match to d1lxaa_
    2. Domains for 3i3a:
      1. 2080136Domain d3i3aa_: 3i3a A: [178040]
        automated match to d1lxaa_
        complexed with s2n
      2. 2080137Domain d3i3ab_: 3i3a B: [178041]
        automated match to d1lxaa_
        complexed with s2n
      3. 2080138Domain d3i3ac_: 3i3a C: [178042]
        automated match to d1lxaa_
        complexed with s2n
    3. Domains for 3i3x:
      1. 2080133Domain d3i3xa_: 3i3x A: [178074]
        automated match to d1lxaa_
        complexed with u22
      2. 2080134Domain d3i3xb_: 3i3x B: [178075]
        automated match to d1lxaa_
        complexed with u22
      3. 2080135Domain d3i3xc_: 3i3x C: [178076]
        automated match to d1lxaa_
        complexed with u22
  14. 2080139Moraxella catarrhalis [TaxId:1236608] [335370] (1 PDB entry)
  15. 2080146Mycobacterium tuberculosis [226785] (1 PDB entry)
  16. 2080148Mycobacterium tuberculosis [TaxId:1773] [224870] (7 PDB entries)
    1. Domain for 3d8v:
    2. Domain for 3dj4:
    3. Domain for 4g3p:
    4. Domain for 4g3q:
    5. Domain for 4g3s:
    6. Domain for 4hcq:
    7. Domain for 4k6r:
  17. 2080156Mycobacterium tuberculosis [TaxId:419947] [225671] (1 PDB entry)
  18. 2080158Mycobacterium tuberculosis [TaxId:83332] [226433] (3 PDB entries)
    1. Domain for 3spt:
    2. Domain for 3st8:
    3. Domain for 4g87:
  19. 2080162Neisseria gonorrhoeae [TaxId:242231] [235544] (2 PDB entries)
    1. Domain for 4m98:
    2. Domains for 4m99:
      1. 2080164Domain d4m99a_: 4m99 A: [235547]
        automated match to d4m9cd_
        complexed with aco, na
      2. 2080165Domain d4m99b_: 4m99 B: [237064]
        automated match to d4m99a_
        complexed with aco, na
      3. 2080166Domain d4m99c_: 4m99 C: [237065]
        automated match to d4m99a_
        complexed with aco, na
  20. 2080167Pseudomonas aeruginosa [TaxId:381754] [276926] (3 PDB entries)
    1. Domains for 5dem:
      1. 2080168Domain d5dema_: 5dem A: [276936]
        automated match to d2qiaa_
        complexed with po4
      2. 2080169Domain d5demb_: 5dem B: [276938]
        automated match to d2qiaa_
        complexed with po4
      3. 2080170Domain d5demc_: 5dem C: [276940]
        automated match to d2qiaa_
        complexed with po4
      4. 2080171Domain d5demd_: 5dem D: [276939]
        automated match to d2qiaa_
        complexed with po4
      5. 2080172Domain d5deme_: 5dem E: [276937]
        automated match to d2qiaa_
        complexed with po4
      6. 2080173Domain d5demf_: 5dem F: [276941]
        automated match to d2qiaa_
        complexed with po4
    2. Domains for 5dep:
      1. 2080174Domain d5depa_: 5dep A: [276930]
        automated match to d2qiaa_
        complexed with po4, ud1
      2. 2080175Domain d5depb_: 5dep B: [276927]
        automated match to d2qiaa_
        complexed with po4, ud1
      3. 2080176Domain d5depc_: 5dep C: [276928]
        automated match to d2qiaa_
        complexed with po4, ud1
      4. 2080177Domain d5depd_: 5dep D: [276935]
        automated match to d2qiaa_
        complexed with po4, ud1
      5. 2080178Domain d5depe_: 5dep E: [276931]
        automated match to d2qiaa_
        complexed with po4, ud1
      6. 2080179Domain d5depf_: 5dep F: [276929]
        automated match to d2qiaa_
        complexed with po4, ud1
    3. Domains for 5dg3:
      1. 2080180Domain d5dg3a_: 5dg3 A: [276947]
        automated match to d2qiaa_
        complexed with po4, u21
      2. 2080181Domain d5dg3b_: 5dg3 B: [276942]
        automated match to d2qiaa_
        complexed with po4, u21
      3. 2080182Domain d5dg3c_: 5dg3 C: [276951]
        automated match to d2qiaa_
        complexed with po4, u21
      4. 2080183Domain d5dg3d_: 5dg3 D: [276948]
        automated match to d2qiaa_
        complexed with po4, u21
      5. 2080184Domain d5dg3e_: 5dg3 E: [276950]
        automated match to d2qiaa_
        complexed with po4, u21
      6. 2080185Domain d5dg3f_: 5dg3 F: [276949]
        automated match to d2qiaa_
        complexed with po4, u21
  21. 2080186Salmonella typhimurium [TaxId:90371] [189687] (1 PDB entry)
  22. 2080188Soybean (Glycine max) [TaxId:3847] [228990] (3 PDB entries)
    1. Domains for 4n69:
      1. 2080191Domain d4n69a_: 4n69 A: [228991]
        automated match to d3gvdc_
        complexed with po4, ser
      2. 2080192Domain d4n69b_: 4n69 B: [228992]
        automated match to d3gvdc_
        complexed with po4, ser
    2. Domains for 4n6a:
      1. 2080189Domain d4n6aa_: 4n6a A: [229712]
        automated match to d4n69a_
        complexed with po4
      2. 2080190Domain d4n6ab_: 4n6a B: [229711]
        automated match to d4n69a_
        complexed with po4
    3. Domains for 4n6b:
      1. 2080193Domain d4n6ba_: 4n6b A: [253907]
        automated match to d3gvdc_
        complexed with coa
      2. 2080194Domain d4n6bb_: 4n6b B: [253908]
        automated match to d3gvdc_
        complexed with coa
      3. 2080195Domain d4n6bc_: 4n6b C: [253909]
        automated match to d3gvdc_
        complexed with coa
      4. 2080196Domain d4n6bd_: 4n6b D: [253910]
        automated match to d3gvdc_
        complexed with coa
      5. 2080197Domain d4n6be_: 4n6b E: [253911]
        automated match to d3gvdc_
        complexed with coa
      6. 2080198Domain d4n6bf_: 4n6b F: [253912]
        automated match to d3gvdc_
        complexed with coa
  23. 2080199Staphylococcus aureus [TaxId:93062] [225621] (4 PDB entries)
    1. Domain for 3ftt:
    2. Domains for 3v4e:
      1. 2080205Domain d3v4ea_: 3v4e A: [217633]
        automated match to d3hjja_
        complexed with coa, peg, pge, so4
      2. 2080206Domain d3v4eb_: 3v4e B: [217634]
        automated match to d3hjja_
        complexed with coa, peg, pge, so4
      3. 2080207Domain d3v4ec_: 3v4e C: [217635]
        automated match to d3hjja_
        complexed with coa, peg, pge, so4
    3. Domain for 5u2k:
    4. Domains for 5v0z:
      1. 2080201Domain d5v0za_: 5v0z A: [331463]
        automated match to d3ftta_
        complexed with cl, coa, edo, po4, unx
      2. 2080202Domain d5v0zb_: 5v0z B: [331459]
        automated match to d3ftta_
        complexed with cl, coa, edo, po4, unx
      3. 2080203Domain d5v0zc_: 5v0z C: [331449]
        automated match to d3ftta_
        complexed with cl, coa, edo, po4, unx
  24. 2080208Thale cress (Arabidopsis thaliana) [TaxId:3702] [267882] (1 PDB entry)
  25. 2080210Thermosynechococcus elongatus [TaxId:197221] [225842] (3 PDB entries)
    1. Domains for 3kwc:
      1. 2080213Domain d3kwca_: 3kwc A: [247293]
        automated match to d3ow5a_
        complexed with cl, ipa, zn
      2. 2080214Domain d3kwcb_: 3kwc B: [247294]
        automated match to d3ow5a_
        complexed with cl, ipa, zn
      3. 2080215Domain d3kwcc_: 3kwc C: [247295]
        automated match to d3ow5a_
        complexed with cl, ipa, zn
      4. 2080216Domain d3kwcd_: 3kwc D: [247296]
        automated match to d3ow5a_
        complexed with cl, ipa, zn
      5. 2080217Domain d3kwce_: 3kwc E: [247297]
        automated match to d3ow5a_
        complexed with cl, ipa, zn
      6. 2080218Domain d3kwcf_: 3kwc F: [247298]
        automated match to d3ow5a_
        complexed with cl, ipa, zn
    2. Domain for 3kwd:
    3. Domain for 3kwe:
  26. 2080219Vibrio cholerae [TaxId:243277] [189429] (1 PDB entry)
  27. 2080232Vibrio cholerae [TaxId:666] [188601] (1 PDB entry)
  28. 2080234Vibrio fischeri [TaxId:312309] [330859] (1 PDB entry)
  29. 2080239Yersinia pestis [TaxId:386656] [232199] (1 PDB entry)
  30. 2080241Yersinia pseudotuberculosis [TaxId:214092] [234417] (1 PDB entry)

More info for Protein automated matches from b.81.1.0: automated matches

Timeline for Protein automated matches from b.81.1.0: automated matches: