Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1510239Class b: All beta proteins [48724] (176 folds)
  3. 1557864Fold b.81: Single-stranded left-handed beta-helix [51160] (4 superfamilies)
    superhelix turns are made of parallel beta-strands and (short) turns
  4. 1557865Superfamily b.81.1: Trimeric LpxA-like enzymes [51161] (9 families) (S)
    superhelical turns are made of three short strands; duplication: the sequence hexapeptide repeats correspond to individual strands
  5. 1558144Family b.81.1.0: automated matches [191560] (1 protein)
    not a true family
  6. 1558145Protein automated matches [190967] (25 species)
    not a true protein

Species:

  1. 1558146Acinetobacter baumannii [TaxId:470] [193329] (3 PDB entries)
    1. Domains for 4e6t:
      1. 1558148Domain d4e6ta_: 4e6t A: [251695]
        automated match to d4e6ua_
        complexed with flc
      2. 1558149Domain d4e6tb_: 4e6t B: [251696]
        automated match to d4e6ua_
        complexed with flc
      3. 1558150Domain d4e6tc_: 4e6t C: [251697]
        automated match to d4e6ua_
        complexed with flc
    2. Domain for 4e6u:
    3. Domains for 4m9c:
      1. 1558151Domain d4m9ca_: 4m9c A: [235549]
        automated match to d4m9cd_
      2. 1558152Domain d4m9cb_: 4m9c B: [235551]
        automated match to d4m9cd_
      3. 1558153Domain d4m9cc_: 4m9c C: [235548]
        automated match to d4m9cd_
      4. 1558154Domain d4m9cd_: 4m9c D: [228109]
        automated match to d2npoa1
      5. 1558155Domain d4m9ce_: 4m9c E: [235554]
        automated match to d4m9cd_
      6. 1558156Domain d4m9cf_: 4m9c F: [235553]
        automated match to d4m9cd_
  2. 1558157Anaplasma phagocytophilum [TaxId:212042] [225756] (1 PDB entry)
  3. 1558159Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [188916] (2 PDB entries)
    1. Domains for 3hjj:
      1. 1558160Domain d3hjja_: 3hjj A: [177610]
        automated match to d1ocxa_
        complexed with acy, gol, so4
      2. 1558161Domain d3hjjb_: 3hjj B: [177611]
        automated match to d1ocxa_
        complexed with acy, gol, so4
      3. 1558162Domain d3hjjc_: 3hjj C: [177612]
        automated match to d1ocxa_
        complexed with acy, gol, so4
    2. Domains for 3igj:
      1. 1558163Domain d3igja_: 3igj A: [178307]
        automated match to d1ocxa_
        complexed with aco, fmt, gol, so4
      2. 1558164Domain d3igjb_: 3igj B: [178308]
        automated match to d1ocxa_
        complexed with aco, fmt, gol, so4
      3. 1558165Domain d3igjc_: 3igj C: [178309]
        automated match to d1ocxa_
        complexed with aco, fmt, gol, so4
  4. 1558166Brucella abortus [TaxId:359391] [229708] (1 PDB entry)
  5. 1558173Brucella abortus [TaxId:430066] [237007] (2 PDB entries)
    1. Domains for 4hzc:
      1. 1558176Domain d4hzca_: 4hzc A: [237010]
        automated match to d3gvdi_
        complexed with 15p, cl, mg, trs
      2. 1558177Domain d4hzcb_: 4hzc B: [237009]
        automated match to d3gvdi_
        complexed with 15p, cl, mg, trs
      3. 1558178Domain d4hzcc_: 4hzc C: [237008]
        automated match to d3gvdi_
        complexed with 15p, cl, mg, trs
      4. 1558179Domain d4hzcd_: 4hzc D: [240226]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
      5. 1558180Domain d4hzce_: 4hzc E: [240227]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
      6. 1558181Domain d4hzcf_: 4hzc F: [240228]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
      7. 1558182Domain d4hzcg_: 4hzc G: [240229]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
      8. 1558183Domain d4hzch_: 4hzc H: [240230]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
      9. 1558184Domain d4hzci_: 4hzc I: [240231]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
      10. 1558185Domain d4hzcj_: 4hzc J: [240232]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
      11. 1558186Domain d4hzck_: 4hzc K: [240233]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
      12. 1558187Domain d4hzcl_: 4hzc L: [240234]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
    2. Domains for 4hzd:
      1. 1558174Domain d4hzda_: 4hzd A: [237011]
        automated match to d3gvdi_
        complexed with 15p, coa, mg
      2. 1558175Domain d4hzdb_: 4hzd B: [237012]
        automated match to d3gvdi_
        complexed with 15p, coa, mg
  6. 1558188Brucella melitensis [TaxId:359391] [225881] (1 PDB entry)
  7. 1558191Burkholderia thailandensis [TaxId:271848] [226377] (1 PDB entry)
  8. 1558198Campylobacter jejuni [TaxId:192222] [189681] (1 PDB entry)
  9. 1558200Clostridium difficile [TaxId:272563] [193268] (3 PDB entries)
    1. Domains for 3srt:
      1. 1558205Domain d3srta_: 3srt A: [216528]
        automated match to d4isxa_
        complexed with gol
      2. 1558206Domain d3srtb_: 3srt B: [216529]
        automated match to d4isxa_
        complexed with gol
    2. Domains for 4isx:
      1. 1558207Domain d4isxa_: 4isx A: [193269]
        automated match to d2p2oa_
        complexed with aco, mes
      2. 1558208Domain d4isxb_: 4isx B: [202675]
        automated match to d4isxa_
        complexed with aco, mes
    3. Domains for 4mfg:
      1. 1558201Domain d4mfga_: 4mfg A: [235611]
        automated match to d4mfgd_
        complexed with mg, ni
      2. 1558202Domain d4mfgb_: 4mfg B: [235613]
        automated match to d4mfgd_
        complexed with mg, ni
      3. 1558203Domain d4mfgc_: 4mfg C: [235612]
        automated match to d4mfgd_
        complexed with mg, ni
      4. 1558204Domain d4mfgd_: 4mfg D: [227805]
        automated match to d1xhda_
        complexed with mg, ni
  10. 1558209Escherichia coli K-12 [TaxId:83333] [193604] (2 PDB entries)
    1. Domains for 3tio:
      1. 1558210Domain d3tioa_: 3tio A: [200826]
        automated match to d3tioc_
        complexed with po4, zn
      2. 1558211Domain d3tiob_: 3tio B: [200827]
        automated match to d3tioc_
        complexed with po4, zn
      3. 1558212Domain d3tioc_: 3tio C: [193605]
        automated match to d3r3ra_
        complexed with po4, zn
      4. 1558213Domain d3tiod_: 3tio D: [200828]
        automated match to d3tioc_
        complexed with po4, zn
      5. 1558214Domain d3tioe_: 3tio E: [200829]
        automated match to d3tioc_
        complexed with po4, zn
      6. 1558215Domain d3tiof_: 3tio F: [200830]
        automated match to d3tioc_
        complexed with po4, zn
    2. Domains for 3tis:
      1. 1558216Domain d3tisa_: 3tis A: [216828]
        automated match to d3tioc_
        complexed with zn
      2. 1558217Domain d3tisb_: 3tis B: [216829]
        automated match to d3tioc_
        complexed with zn
      3. 1558218Domain d3tisc_: 3tis C: [216830]
        automated match to d3tioc_
        complexed with zn
  11. 1558219Haemophilus influenzae [TaxId:727] [231321] (14 PDB entries)
    1. Domain for 2v0h:
    2. Domain for 2v0i:
    3. Domain for 2v0j:
    4. Domain for 2v0k:
    5. Domain for 2v0l:
    6. Domain for 2vd4:
    7. Domain for 2w0v:
    8. Domain for 2w0w:
    9. Domain for 4e1k:
    10. Domain for 4knr:
    11. Domain for 4knx:
    12. Domain for 4kpx:
    13. Domain for 4kpz:
    14. Domain for 4kql:
  12. 1558234Leptospira interrogans [TaxId:173] [188993] (3 PDB entries)
    1. Domains for 3hsq:
      1. 1558235Domain d3hsqa_: 3hsq A: [177816]
        automated match to d1lxaa_
      2. 1558236Domain d3hsqb_: 3hsq B: [177817]
        automated match to d1lxaa_
      3. 1558237Domain d3hsqc_: 3hsq C: [177818]
        automated match to d1lxaa_
    2. Domains for 3i3a:
      1. 1558241Domain d3i3aa_: 3i3a A: [178040]
        automated match to d1lxaa_
        complexed with s2n
      2. 1558242Domain d3i3ab_: 3i3a B: [178041]
        automated match to d1lxaa_
        complexed with s2n
      3. 1558243Domain d3i3ac_: 3i3a C: [178042]
        automated match to d1lxaa_
        complexed with s2n
    3. Domains for 3i3x:
      1. 1558238Domain d3i3xa_: 3i3x A: [178074]
        automated match to d1lxaa_
        complexed with u22
      2. 1558239Domain d3i3xb_: 3i3x B: [178075]
        automated match to d1lxaa_
        complexed with u22
      3. 1558240Domain d3i3xc_: 3i3x C: [178076]
        automated match to d1lxaa_
        complexed with u22
  13. 1558244Mycobacterium tuberculosis [226785] (1 PDB entry)
  14. 1558246Mycobacterium tuberculosis [TaxId:1773] [224870] (7 PDB entries)
    1. Domain for 3d8v:
    2. Domain for 3dj4:
    3. Domain for 4g3p:
    4. Domain for 4g3q:
    5. Domain for 4g3s:
    6. Domain for 4hcq:
    7. Domain for 4k6r:
  15. 1558254Mycobacterium tuberculosis [TaxId:419947] [225671] (1 PDB entry)
  16. 1558256Mycobacterium tuberculosis [TaxId:83332] [226433] (3 PDB entries)
    1. Domain for 3spt:
    2. Domain for 3st8:
    3. Domain for 4g87:
  17. 1558260Neisseria gonorrhoeae [TaxId:242231] [235544] (2 PDB entries)
    1. Domain for 4m98:
    2. Domains for 4m99:
      1. 1558262Domain d4m99a_: 4m99 A: [235547]
        automated match to d4m9cd_
        complexed with aco, na
      2. 1558263Domain d4m99b_: 4m99 B: [237064]
        automated match to d4m99a_
        complexed with aco, na
      3. 1558264Domain d4m99c_: 4m99 C: [237065]
        automated match to d4m99a_
        complexed with aco, na
  18. 1558265Salmonella typhimurium [TaxId:90371] [189687] (1 PDB entry)
  19. 1558267Soybean (Glycine max) [TaxId:3847] [228990] (3 PDB entries)
    1. Domains for 4n69:
      1. 1558270Domain d4n69a_: 4n69 A: [228991]
        automated match to d3gvdc_
        complexed with po4, ser
      2. 1558271Domain d4n69b_: 4n69 B: [228992]
        automated match to d3gvdc_
        complexed with po4, ser
    2. Domains for 4n6a:
      1. 1558268Domain d4n6aa_: 4n6a A: [229712]
        automated match to d4n69a_
        complexed with po4
      2. 1558269Domain d4n6ab_: 4n6a B: [229711]
        automated match to d4n69a_
        complexed with po4
    3. Domains for 4n6b:
      1. 1558272Domain d4n6ba_: 4n6b A: [253907]
        automated match to d3gvdc_
        complexed with coa
      2. 1558273Domain d4n6bb_: 4n6b B: [253908]
        automated match to d3gvdc_
        complexed with coa
      3. 1558274Domain d4n6bc_: 4n6b C: [253909]
        automated match to d3gvdc_
        complexed with coa
      4. 1558275Domain d4n6bd_: 4n6b D: [253910]
        automated match to d3gvdc_
        complexed with coa
      5. 1558276Domain d4n6be_: 4n6b E: [253911]
        automated match to d3gvdc_
        complexed with coa
      6. 1558277Domain d4n6bf_: 4n6b F: [253912]
        automated match to d3gvdc_
        complexed with coa
  20. 1558278Staphylococcus aureus [TaxId:93062] [225621] (2 PDB entries)
    1. Domain for 3ftt:
    2. Domains for 3v4e:
      1. 1558280Domain d3v4ea_: 3v4e A: [217633]
        automated match to d3hjja_
        complexed with coa, peg, pge, so4
      2. 1558281Domain d3v4eb_: 3v4e B: [217634]
        automated match to d3hjja_
        complexed with coa, peg, pge, so4
      3. 1558282Domain d3v4ec_: 3v4e C: [217635]
        automated match to d3hjja_
        complexed with coa, peg, pge, so4
  21. 1558283Thermosynechococcus elongatus [TaxId:197221] [225842] (3 PDB entries)
    1. Domains for 3kwc:
      1. 1558286Domain d3kwca_: 3kwc A: [247293]
        automated match to d3ow5a_
        complexed with cl, ipa, zn
      2. 1558287Domain d3kwcb_: 3kwc B: [247294]
        automated match to d3ow5a_
        complexed with cl, ipa, zn
      3. 1558288Domain d3kwcc_: 3kwc C: [247295]
        automated match to d3ow5a_
        complexed with cl, ipa, zn
      4. 1558289Domain d3kwcd_: 3kwc D: [247296]
        automated match to d3ow5a_
        complexed with cl, ipa, zn
      5. 1558290Domain d3kwce_: 3kwc E: [247297]
        automated match to d3ow5a_
        complexed with cl, ipa, zn
      6. 1558291Domain d3kwcf_: 3kwc F: [247298]
        automated match to d3ow5a_
        complexed with cl, ipa, zn
    2. Domain for 3kwd:
    3. Domain for 3kwe:
  22. 1558292Vibrio cholerae [TaxId:243277] [189429] (1 PDB entry)
  23. 1558305Vibrio cholerae [TaxId:666] [188601] (1 PDB entry)
  24. 1558307Yersinia pestis [TaxId:386656] [232199] (1 PDB entry)
  25. 1558309Yersinia pseudotuberculosis [TaxId:214092] [234417] (1 PDB entry)

More info for Protein automated matches from b.81.1.0: automated matches

Timeline for Protein automated matches from b.81.1.0: automated matches: