Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1287432Class b: All beta proteins [48724] (174 folds)
  3. 1329958Fold b.81: Single-stranded left-handed beta-helix [51160] (4 superfamilies)
    superhelix turns are made of parallel beta-strands and (short) turns
  4. 1329959Superfamily b.81.1: Trimeric LpxA-like enzymes [51161] (9 families) (S)
    superhelical turns are made of three short strands; duplication: the sequence hexapeptide repeats correspond to individual strands
  5. 1330233Family b.81.1.0: automated matches [191560] (1 protein)
    not a true family
  6. 1330234Protein automated matches [190967] (25 species)
    not a true protein

Species:

  1. 1330235Acinetobacter baumannii [TaxId:470] [193329] (2 PDB entries)
    1. Domain for 4e6u:
    2. Domains for 4m9c:
      1. 1330237Domain d4m9ca_: 4m9c A: [235549]
        automated match to d4m9cd_
      2. 1330238Domain d4m9cb_: 4m9c B: [235551]
        automated match to d4m9cd_
      3. 1330239Domain d4m9cc_: 4m9c C: [235548]
        automated match to d4m9cd_
      4. 1330240Domain d4m9cd_: 4m9c D: [228109]
        automated match to d2npoa1
      5. 1330241Domain d4m9ce_: 4m9c E: [235554]
        automated match to d4m9cd_
      6. 1330242Domain d4m9cf_: 4m9c F: [235553]
        automated match to d4m9cd_
  2. 1330243Anaplasma phagocytophilum [TaxId:212042] [225756] (1 PDB entry)
  3. 1330245Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [188916] (2 PDB entries)
    1. Domains for 3hjj:
      1. 1330246Domain d3hjja_: 3hjj A: [177610]
        automated match to d1ocxa_
        complexed with acy, gol, so4
      2. 1330247Domain d3hjjb_: 3hjj B: [177611]
        automated match to d1ocxa_
        complexed with acy, gol, so4
      3. 1330248Domain d3hjjc_: 3hjj C: [177612]
        automated match to d1ocxa_
        complexed with acy, gol, so4
    2. Domains for 3igj:
      1. 1330249Domain d3igja_: 3igj A: [178307]
        automated match to d1ocxa_
        complexed with aco, fmt, gol, so4
      2. 1330250Domain d3igjb_: 3igj B: [178308]
        automated match to d1ocxa_
        complexed with aco, fmt, gol, so4
      3. 1330251Domain d3igjc_: 3igj C: [178309]
        automated match to d1ocxa_
        complexed with aco, fmt, gol, so4
  4. 1330252Brucella abortus [TaxId:359391] [229708] (1 PDB entry)
  5. 1330259Brucella abortus [TaxId:430066] [237007] (2 PDB entries)
    1. Domains for 4hzc:
      1. 1330262Domain d4hzca_: 4hzc A: [237010]
        automated match to d3gvdi_
        complexed with 15p, cl, mg, trs
      2. 1330263Domain d4hzcb_: 4hzc B: [237009]
        automated match to d3gvdi_
        complexed with 15p, cl, mg, trs
      3. 1330264Domain d4hzcc_: 4hzc C: [237008]
        automated match to d3gvdi_
        complexed with 15p, cl, mg, trs
    2. Domains for 4hzd:
      1. 1330260Domain d4hzda_: 4hzd A: [237011]
        automated match to d3gvdi_
        complexed with 15p, coa, mg
      2. 1330261Domain d4hzdb_: 4hzd B: [237012]
        automated match to d3gvdi_
        complexed with 15p, coa, mg
  6. 1330265Brucella melitensis [TaxId:359391] [225881] (1 PDB entry)
  7. 1330268Burkholderia thailandensis [TaxId:271848] [226377] (1 PDB entry)
  8. 1330275Campylobacter jejuni [TaxId:192222] [189681] (1 PDB entry)
  9. 1330277Clostridium difficile [TaxId:272563] [193268] (3 PDB entries)
    1. Domains for 3srt:
      1. 1330282Domain d3srta_: 3srt A: [216528]
        automated match to d4isxa_
        complexed with gol
      2. 1330283Domain d3srtb_: 3srt B: [216529]
        automated match to d4isxa_
        complexed with gol
    2. Domains for 4isx:
      1. 1330284Domain d4isxa_: 4isx A: [193269]
        automated match to d2p2oa_
        complexed with aco, mes
      2. 1330285Domain d4isxb_: 4isx B: [202675]
        automated match to d4isxa_
        complexed with aco, mes
    3. Domains for 4mfg:
      1. 1330278Domain d4mfga_: 4mfg A: [235611]
        automated match to d4mfgd_
        complexed with mg, ni
      2. 1330279Domain d4mfgb_: 4mfg B: [235613]
        automated match to d4mfgd_
        complexed with mg, ni
      3. 1330280Domain d4mfgc_: 4mfg C: [235612]
        automated match to d4mfgd_
        complexed with mg, ni
      4. 1330281Domain d4mfgd_: 4mfg D: [227805]
        automated match to d1xhda_
        complexed with mg, ni
  10. 1330286Escherichia coli [TaxId:83333] [193604] (2 PDB entries)
    1. Domains for 3tio:
      1. 1330287Domain d3tioa_: 3tio A: [200826]
        automated match to d3tioc_
        complexed with po4, zn
      2. 1330288Domain d3tiob_: 3tio B: [200827]
        automated match to d3tioc_
        complexed with po4, zn
      3. 1330289Domain d3tioc_: 3tio C: [193605]
        automated match to d3r3ra_
        complexed with po4, zn
      4. 1330290Domain d3tiod_: 3tio D: [200828]
        automated match to d3tioc_
        complexed with po4, zn
      5. 1330291Domain d3tioe_: 3tio E: [200829]
        automated match to d3tioc_
        complexed with po4, zn
      6. 1330292Domain d3tiof_: 3tio F: [200830]
        automated match to d3tioc_
        complexed with po4, zn
    2. Domains for 3tis:
      1. 1330293Domain d3tisa_: 3tis A: [216828]
        automated match to d3tioc_
        complexed with zn
      2. 1330294Domain d3tisb_: 3tis B: [216829]
        automated match to d3tioc_
        complexed with zn
      3. 1330295Domain d3tisc_: 3tis C: [216830]
        automated match to d3tioc_
        complexed with zn
  11. 1330296Glycine max [TaxId:3847] [228990] (2 PDB entries)
    1. Domains for 4n69:
      1. 1330299Domain d4n69a_: 4n69 A: [228991]
        automated match to d3gvdc_
        complexed with po4, ser
      2. 1330300Domain d4n69b_: 4n69 B: [228992]
        automated match to d3gvdc_
        complexed with po4, ser
    2. Domains for 4n6a:
      1. 1330297Domain d4n6aa_: 4n6a A: [229712]
        automated match to d4n69a_
        complexed with po4
      2. 1330298Domain d4n6ab_: 4n6a B: [229711]
        automated match to d4n69a_
        complexed with po4
  12. Haemophilus influenzae [TaxId:727] [231321] (5 PDB entries)
    1. Domain for 2v0h:
    2. Domain for 2v0i:
    3. Domain for 2v0j:
    4. Domain for 2v0k:
    5. Domain for 2v0l:
  13. 1330307Leptospira interrogans [TaxId:173] [188993] (3 PDB entries)
    1. Domains for 3hsq:
      1. 1330308Domain d3hsqa_: 3hsq A: [177816]
        automated match to d1lxaa_
      2. 1330309Domain d3hsqb_: 3hsq B: [177817]
        automated match to d1lxaa_
      3. 1330310Domain d3hsqc_: 3hsq C: [177818]
        automated match to d1lxaa_
    2. Domains for 3i3a:
      1. 1330314Domain d3i3aa_: 3i3a A: [178040]
        automated match to d1lxaa_
        complexed with s2n
      2. 1330315Domain d3i3ab_: 3i3a B: [178041]
        automated match to d1lxaa_
        complexed with s2n
      3. 1330316Domain d3i3ac_: 3i3a C: [178042]
        automated match to d1lxaa_
        complexed with s2n
    3. Domains for 3i3x:
      1. 1330311Domain d3i3xa_: 3i3x A: [178074]
        automated match to d1lxaa_
        complexed with u22
      2. 1330312Domain d3i3xb_: 3i3x B: [178075]
        automated match to d1lxaa_
        complexed with u22
      3. 1330313Domain d3i3xc_: 3i3x C: [178076]
        automated match to d1lxaa_
        complexed with u22
  14. 1330317Mycobacterium tuberculosis [226785] (1 PDB entry)
  15. 1330319Mycobacterium tuberculosis [TaxId:1773] [224870] (6 PDB entries)
    1. Domain for 3d8v:
    2. Domain for 3dj4:
    3. Domain for 4g3p:
    4. Domain for 4g3q:
    5. Domain for 4g3s:
    6. Domain for 4hcq:
  16. 1330326Mycobacterium tuberculosis [TaxId:419947] [225671] (1 PDB entry)
  17. 1330328Mycobacterium tuberculosis [TaxId:83332] [226433] (3 PDB entries)
    1. Domain for 3spt:
    2. Domain for 3st8:
    3. Domain for 4g87:
  18. 1330332Neisseria gonorrhoeae [TaxId:242231] [235544] (2 PDB entries)
    1. Domain for 4m98:
    2. Domains for 4m99:
      1. 1330334Domain d4m99a_: 4m99 A: [235547]
        automated match to d4m9cd_
        complexed with aco, na
      2. 1330335Domain d4m99b_: 4m99 B: [237064]
        automated match to d4m99a_
        complexed with aco, na
      3. 1330336Domain d4m99c_: 4m99 C: [237065]
        automated match to d4m99a_
        complexed with aco, na
  19. 1330337Salmonella typhimurium [TaxId:90371] [189687] (1 PDB entry)
  20. 1330339Staphylococcus aureus [TaxId:93062] [225621] (2 PDB entries)
    1. Domain for 3ftt:
    2. Domains for 3v4e:
      1. 1330341Domain d3v4ea_: 3v4e A: [217633]
        automated match to d3hjja_
        complexed with coa, peg, pge, so4
      2. 1330342Domain d3v4eb_: 3v4e B: [217634]
        automated match to d3hjja_
        complexed with coa, peg, pge, so4
      3. 1330343Domain d3v4ec_: 3v4e C: [217635]
        automated match to d3hjja_
        complexed with coa, peg, pge, so4
  21. 1330344Thermosynechococcus elongatus [TaxId:197221] [225842] (2 PDB entries)
    1. Domain for 3kwd:
    2. Domain for 3kwe:
  22. 1330347Vibrio cholerae [TaxId:243277] [189429] (1 PDB entry)
  23. 1330360Vibrio cholerae [TaxId:666] [188601] (1 PDB entry)
  24. 1330362Yersinia pestis [TaxId:386656] [232199] (1 PDB entry)
  25. 1330364Yersinia pseudotuberculosis [TaxId:214092] [234417] (1 PDB entry)

More info for Protein automated matches from b.81.1.0: automated matches

Timeline for Protein automated matches from b.81.1.0: automated matches: