Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2151697Fold c.133: RbsD-like [102545] (1 superfamily)
    3 layers: a/b/a; mixed beta-sheet of 6 strands, order 251634; strand 6 is antiparallel to the rest
  4. 2151698Superfamily c.133.1: RbsD-like [102546] (2 families) (S)
  5. 2151725Family c.133.1.0: automated matches [191558] (1 protein)
    not a true family
  6. 2151726Protein automated matches [190962] (6 species)
    not a true protein

Species:

  1. 2151727Bifidobacterium longum [TaxId:391904] [189332] (1 PDB entry)
  2. 2151738Escherichia coli [TaxId:562] [189112] (1 PDB entry)
  3. 2151749Mouse (Mus musculus) [TaxId:10090] [189111] (1 PDB entry)
  4. 2151752Salmonella typhimurium [TaxId:90371] [188582] (2 PDB entries)
    1. Domains for 3dsa:
      1. 2151768Domain d3dsaf1: 3dsa F:1-138 [305222]
        Other proteins in same PDB: d3dsaf2, d3dsag2, d3dsah2, d3dsai2, d3dsao2
        automated match to d3e7nb_
        complexed with edo
      2. 2151769Domain d3dsag1: 3dsa G:1-137 [305224]
        Other proteins in same PDB: d3dsaf2, d3dsag2, d3dsah2, d3dsai2, d3dsao2
        automated match to d3e7nb_
        complexed with edo
      3. 2151770Domain d3dsah1: 3dsa H:1-138 [305226]
        Other proteins in same PDB: d3dsaf2, d3dsag2, d3dsah2, d3dsai2, d3dsao2
        automated match to d3e7nb_
        complexed with edo
      4. 2151771Domain d3dsai1: 3dsa I:1-138 [305228]
        Other proteins in same PDB: d3dsaf2, d3dsag2, d3dsah2, d3dsai2, d3dsao2
        automated match to d3e7nb_
        complexed with edo
      5. 2151772Domain d3dsao1: 3dsa O:1-138 [305230]
        Other proteins in same PDB: d3dsaf2, d3dsag2, d3dsah2, d3dsai2, d3dsao2
        automated match to d3e7nb_
        complexed with edo
    2. Domains for 3e7n:
      1. 2151753Domain d3e7na1: 3e7n A:1-138 [174719]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      2. 2151754Domain d3e7nb1: 3e7n B:1-139 [174720]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      3. 2151755Domain d3e7nc1: 3e7n C:1-139 [174721]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      4. 2151756Domain d3e7nd1: 3e7n D:1-139 [174722]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      5. 2151757Domain d3e7ne1: 3e7n E:1-138 [174723]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      6. 2151758Domain d3e7nf1: 3e7n F:1-138 [174724]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      7. 2151759Domain d3e7ng1: 3e7n G:1-137 [174725]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      8. 2151760Domain d3e7nh1: 3e7n H:1-138 [174726]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      9. 2151761Domain d3e7ni1: 3e7n I:1-138 [174727]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      10. 2151762Domain d3e7nj1: 3e7n J:1-138 [174728]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      11. 2151763Domain d3e7nk1: 3e7n K:1-138 [174729]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      12. 2151764Domain d3e7nl1: 3e7n L:1-137 [174730]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      13. 2151765Domain d3e7nm1: 3e7n M:1-138 [174731]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      14. 2151766Domain d3e7nn1: 3e7n N:1-138 [174732]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      15. 2151767Domain d3e7no1: 3e7n O:1-138 [174733]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
  5. 2151773Staphylococcus aureus [TaxId:93061] [189968] (2 PDB entries)
    1. Domains for 3p12:
      1. 2151778Domain d3p12a_: 3p12 A: [183433]
        automated match to d1ogca_
        complexed with gol
      2. 2151779Domain d3p12b_: 3p12 B: [183434]
        automated match to d1ogca_
        complexed with gol
      3. 2151780Domain d3p12c_: 3p12 C: [183435]
        automated match to d1ogca_
        complexed with gol
      4. 2151781Domain d3p12d_: 3p12 D: [183436]
        automated match to d1ogca_
        complexed with gol
    2. Domains for 3p13:
      1. 2151774Domain d3p13a_: 3p13 A: [183437]
        automated match to d1ogca_
        complexed with rip
      2. 2151775Domain d3p13b_: 3p13 B: [183438]
        automated match to d1ogca_
        complexed with rip
      3. 2151776Domain d3p13c_: 3p13 C: [183439]
        automated match to d1ogca_
        complexed with rip
      4. 2151777Domain d3p13d_: 3p13 D: [183440]
        automated match to d1ogca_
        complexed with rip
  6. 2151782Streptococcus pneumoniae [TaxId:170187] [189744] (1 PDB entry)

More info for Protein automated matches from c.133.1.0: automated matches

Timeline for Protein automated matches from c.133.1.0: automated matches: