Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2494083Fold c.133: RbsD-like [102545] (1 superfamily)
    3 layers: a/b/a; mixed beta-sheet of 6 strands, order 251634; strand 6 is antiparallel to the rest
  4. 2494084Superfamily c.133.1: RbsD-like [102546] (2 families) (S)
  5. 2494111Family c.133.1.0: automated matches [191558] (1 protein)
    not a true family
  6. 2494112Protein automated matches [190962] (7 species)
    not a true protein

Species:

  1. 2494113Bifidobacterium longum [TaxId:391904] [189332] (1 PDB entry)
  2. 2494124Escherichia coli [TaxId:562] [189112] (1 PDB entry)
  3. 2494135Mouse (Mus musculus) [TaxId:10090] [189111] (1 PDB entry)
  4. 2494138Salmonella typhimurium [TaxId:602] [346345] (1 PDB entry)
  5. 2494144Salmonella typhimurium [TaxId:90371] [188582] (2 PDB entries)
    1. Domains for 3dsa:
      1. 2494160Domain d3dsaf1: 3dsa F:1-138 [305222]
        Other proteins in same PDB: d3dsaa2, d3dsab2, d3dsac2, d3dsad2, d3dsae2, d3dsaf2, d3dsag2, d3dsah2, d3dsai2, d3dsao2
        automated match to d3e7nb_
        complexed with edo
      2. 2494161Domain d3dsag1: 3dsa G:1-137 [305224]
        Other proteins in same PDB: d3dsaa2, d3dsab2, d3dsac2, d3dsad2, d3dsae2, d3dsaf2, d3dsag2, d3dsah2, d3dsai2, d3dsao2
        automated match to d3e7nb_
        complexed with edo
      3. 2494162Domain d3dsah1: 3dsa H:1-138 [305226]
        Other proteins in same PDB: d3dsaa2, d3dsab2, d3dsac2, d3dsad2, d3dsae2, d3dsaf2, d3dsag2, d3dsah2, d3dsai2, d3dsao2
        automated match to d3e7nb_
        complexed with edo
      4. 2494163Domain d3dsai1: 3dsa I:1-138 [305228]
        Other proteins in same PDB: d3dsaa2, d3dsab2, d3dsac2, d3dsad2, d3dsae2, d3dsaf2, d3dsag2, d3dsah2, d3dsai2, d3dsao2
        automated match to d3e7nb_
        complexed with edo
      5. 2494164Domain d3dsao1: 3dsa O:1-138 [305230]
        Other proteins in same PDB: d3dsaa2, d3dsab2, d3dsac2, d3dsad2, d3dsae2, d3dsaf2, d3dsag2, d3dsah2, d3dsai2, d3dsao2
        automated match to d3e7nb_
        complexed with edo
    2. Domains for 3e7n:
      1. 2494145Domain d3e7na1: 3e7n A:1-138 [174719]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      2. 2494146Domain d3e7nb1: 3e7n B:1-139 [174720]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      3. 2494147Domain d3e7nc1: 3e7n C:1-139 [174721]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      4. 2494148Domain d3e7nd1: 3e7n D:1-139 [174722]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      5. 2494149Domain d3e7ne1: 3e7n E:1-138 [174723]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      6. 2494150Domain d3e7nf1: 3e7n F:1-138 [174724]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      7. 2494151Domain d3e7ng1: 3e7n G:1-137 [174725]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      8. 2494152Domain d3e7nh1: 3e7n H:1-138 [174726]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      9. 2494153Domain d3e7ni1: 3e7n I:1-138 [174727]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      10. 2494154Domain d3e7nj1: 3e7n J:1-138 [174728]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      11. 2494155Domain d3e7nk1: 3e7n K:1-138 [174729]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      12. 2494156Domain d3e7nl1: 3e7n L:1-137 [174730]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      13. 2494157Domain d3e7nm1: 3e7n M:1-138 [174731]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      14. 2494158Domain d3e7nn1: 3e7n N:1-138 [174732]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
      15. 2494159Domain d3e7no1: 3e7n O:1-138 [174733]
        Other proteins in same PDB: d3e7na2, d3e7nb2, d3e7nc2, d3e7nd2, d3e7ne2, d3e7nf2, d3e7ng2, d3e7nh2, d3e7ni2, d3e7nj2, d3e7nk2, d3e7nl2, d3e7nm2, d3e7nn2, d3e7no2
        automated match to d1ogca_
        complexed with edo
  6. 2494165Staphylococcus aureus [TaxId:93061] [189968] (2 PDB entries)
    1. Domains for 3p12:
      1. 2494170Domain d3p12a_: 3p12 A: [183433]
        automated match to d1ogca_
        complexed with gol
      2. 2494171Domain d3p12b_: 3p12 B: [183434]
        automated match to d1ogca_
        complexed with gol
      3. 2494172Domain d3p12c_: 3p12 C: [183435]
        automated match to d1ogca_
        complexed with gol
      4. 2494173Domain d3p12d_: 3p12 D: [183436]
        automated match to d1ogca_
        complexed with gol
    2. Domains for 3p13:
      1. 2494166Domain d3p13a_: 3p13 A: [183437]
        automated match to d1ogca_
        complexed with rip
      2. 2494167Domain d3p13b_: 3p13 B: [183438]
        automated match to d1ogca_
        complexed with rip
      3. 2494168Domain d3p13c_: 3p13 C: [183439]
        automated match to d1ogca_
        complexed with rip
      4. 2494169Domain d3p13d_: 3p13 D: [183440]
        automated match to d1ogca_
        complexed with rip
  7. 2494174Streptococcus pneumoniae [TaxId:170187] [189744] (1 PDB entry)

More info for Protein automated matches from c.133.1.0: automated matches

Timeline for Protein automated matches from c.133.1.0: automated matches: