Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2492420Fold c.116: alpha/beta knot [75216] (1 superfamily)
    core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot
  4. 2492421Superfamily c.116.1: alpha/beta knot [75217] (9 families) (S)
    known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
    all known members have dimeric structures
  5. 2492607Family c.116.1.0: automated matches [191557] (1 protein)
    not a true family
  6. 2492608Protein automated matches [190961] (16 species)
    not a true protein

Species:

  1. 2492609Anaplasma phagocytophilum [TaxId:212042] [232723] (2 PDB entries)
    1. Domains for 3knu:
      1. 2492611Domain d3knua1: 3knu A:1-211 [232724]
        Other proteins in same PDB: d3knua2, d3knub2, d3knuc2
        automated match to d3quva_
      2. 2492612Domain d3knub1: 3knu B:1-211 [232725]
        Other proteins in same PDB: d3knua2, d3knub2, d3knuc2
        automated match to d3quva_
      3. 2492613Domain d3knuc1: 3knu C:1-210 [232726]
        Other proteins in same PDB: d3knua2, d3knub2, d3knuc2
        automated match to d3quva_
      4. 2492614Domain d3knud_: 3knu D: [232727]
        Other proteins in same PDB: d3knua2, d3knub2, d3knuc2
        automated match to d3quva_
    2. Domain for 4ig6:
  2. 2492615Archaeoglobus fulgidus [TaxId:2234] [255990] (1 PDB entry)
  3. 2492617Bacillus anthracis [TaxId:261594] [257590] (1 PDB entry)
  4. 2492620Bartonella henselae [TaxId:38323] [225732] (1 PDB entry)
  5. 2492623Burkholderia phymatum [TaxId:391038] [256282] (2 PDB entries)
    1. Domains for 4h3y:
      1. 2492626Domain d4h3ya1: 4h3y A:1-254 [252374]
        Other proteins in same PDB: d4h3ya2, d4h3yb2
        automated match to d1uala_
        complexed with cl, sah
      2. 2492627Domain d4h3yb1: 4h3y B:1-254 [252375]
        Other proteins in same PDB: d4h3ya2, d4h3yb2
        automated match to d1uala_
        complexed with cl, sah
    2. Domains for 4h3z:
      1. 2492624Domain d4h3za1: 4h3z A:1-254 [252376]
        Other proteins in same PDB: d4h3za2, d4h3zb2
        automated match to d1uala_
        complexed with cl, sah
      2. 2492625Domain d4h3zb1: 4h3z B:1-254 [252377]
        Other proteins in same PDB: d4h3za2, d4h3zb2
        automated match to d1uala_
        complexed with cl, sah
  6. 2492628Burkholderia pseudomallei [TaxId:320372] [197042] (1 PDB entry)
  7. 2492631Burkholderia pseudomallei [TaxId:425067] [188581] (2 PDB entries)
    1. Domains for 3e5y:
      1. 2492638Domain d3e5ya_: 3e5y A: [174682]
        automated match to d1j85a_
      2. 2492639Domain d3e5yb_: 3e5y B: [174683]
        automated match to d1j85a_
    2. Domains for 4kgn:
      1. 2492632Domain d4kgnc1: 4kgn C:1-156 [202845]
        Other proteins in same PDB: d4kgnc2, d4kgnd2, d4kgnf2
        automated match to d3e5ya_
        complexed with cl, sah
      2. 2492633Domain d4kgnd1: 4kgn D:1-156 [202846]
        Other proteins in same PDB: d4kgnc2, d4kgnd2, d4kgnf2
        automated match to d3e5ya_
        complexed with cl, sah
      3. 2492634Domain d4kgne_: 4kgn E: [202847]
        Other proteins in same PDB: d4kgnc2, d4kgnd2, d4kgnf2
        automated match to d3e5ya_
        complexed with cl, sah
      4. 2492635Domain d4kgnf1: 4kgn F:1-156 [202848]
        Other proteins in same PDB: d4kgnc2, d4kgnd2, d4kgnf2
        automated match to d3e5ya_
        complexed with cl, sah
      5. 2492636Domain d4kgng_: 4kgn G: [202849]
        Other proteins in same PDB: d4kgnc2, d4kgnd2, d4kgnf2
        automated match to d3e5ya_
        complexed with cl, sah
      6. 2492637Domain d4kgnh_: 4kgn H: [202850]
        Other proteins in same PDB: d4kgnc2, d4kgnd2, d4kgnf2
        automated match to d3e5ya_
        complexed with cl, sah
  8. 2492640Escherichia coli K-12 [TaxId:83333] [234948] (2 PDB entries)
    1. Domains for 4jak:
      1. 2492641Domain d4jaka1: 4jak A:2-154 [234949]
        Other proteins in same PDB: d4jaka2, d4jakb2
        automated match to d4kgnd_
      2. 2492642Domain d4jakb1: 4jak B:2-154 [234950]
        Other proteins in same PDB: d4jaka2, d4jakb2
        automated match to d4kgnd_
    2. Domains for 4jal:
      1. 2492643Domain d4jala1: 4jal A:2-155 [237816]
        Other proteins in same PDB: d4jala2, d4jalb2
        automated match to d4jaka_
        complexed with edo, epe, sah
      2. 2492644Domain d4jalb1: 4jal B:2-154 [237817]
        Other proteins in same PDB: d4jala2, d4jalb2
        automated match to d4jaka_
        complexed with edo, epe, sah
  9. 2492645Human (Homo sapiens) [TaxId:9606] [314023] (1 PDB entry)
  10. 2492647Legionella pneumophila [TaxId:446] [341250] (2 PDB entries)
    1. Domains for 5o95:
      1. 2492648Domain d5o95a2: 5o95 A:76-244 [341256]
        Other proteins in same PDB: d5o95a1, d5o95b1, d5o95b3, d5o95c1, d5o95c3, d5o95d1
        automated match to d4e8ba2
      2. 2492649Domain d5o95b2: 5o95 B:76-244 [341283]
        Other proteins in same PDB: d5o95a1, d5o95b1, d5o95b3, d5o95c1, d5o95c3, d5o95d1
        automated match to d4e8ba2
      3. 2492650Domain d5o95c2: 5o95 C:76-244 [341286]
        Other proteins in same PDB: d5o95a1, d5o95b1, d5o95b3, d5o95c1, d5o95c3, d5o95d1
        automated match to d4e8ba2
      4. 2492651Domain d5o95d2: 5o95 D:76-244 [341251]
        Other proteins in same PDB: d5o95a1, d5o95b1, d5o95b3, d5o95c1, d5o95c3, d5o95d1
        automated match to d4e8ba2
    2. Domains for 5o96:
      1. 2492652Domain d5o96a2: 5o96 A:76-244 [341269]
        Other proteins in same PDB: d5o96a1, d5o96b1, d5o96c1, d5o96d1, d5o96e1, d5o96f1, d5o96g1, d5o96h1
        automated match to d4e8ba2
        protein/RNA complex; complexed with sam
      2. 2492653Domain d5o96b2: 5o96 B:76-244 [341265]
        Other proteins in same PDB: d5o96a1, d5o96b1, d5o96c1, d5o96d1, d5o96e1, d5o96f1, d5o96g1, d5o96h1
        automated match to d4e8ba2
        protein/RNA complex; complexed with sam
      3. 2492654Domain d5o96c2: 5o96 C:76-244 [341333]
        Other proteins in same PDB: d5o96a1, d5o96b1, d5o96c1, d5o96d1, d5o96e1, d5o96f1, d5o96g1, d5o96h1
        automated match to d4e8ba2
        protein/RNA complex; complexed with sam
      4. 2492655Domain d5o96d2: 5o96 D:76-244 [341331]
        Other proteins in same PDB: d5o96a1, d5o96b1, d5o96c1, d5o96d1, d5o96e1, d5o96f1, d5o96g1, d5o96h1
        automated match to d4e8ba2
        protein/RNA complex; complexed with sam
      5. 2492656Domain d5o96e2: 5o96 E:76-244 [341254]
        Other proteins in same PDB: d5o96a1, d5o96b1, d5o96c1, d5o96d1, d5o96e1, d5o96f1, d5o96g1, d5o96h1
        automated match to d4e8ba2
        protein/RNA complex; complexed with sam
      6. 2492657Domain d5o96f2: 5o96 F:76-244 [341262]
        Other proteins in same PDB: d5o96a1, d5o96b1, d5o96c1, d5o96d1, d5o96e1, d5o96f1, d5o96g1, d5o96h1
        automated match to d4e8ba2
        protein/RNA complex; complexed with sam
      7. 2492658Domain d5o96g2: 5o96 G:76-244 [341404]
        Other proteins in same PDB: d5o96a1, d5o96b1, d5o96c1, d5o96d1, d5o96e1, d5o96f1, d5o96g1, d5o96h1
        automated match to d4e8ba2
        protein/RNA complex; complexed with sam
      8. 2492659Domain d5o96h2: 5o96 H:76-244 [341267]
        Other proteins in same PDB: d5o96a1, d5o96b1, d5o96c1, d5o96d1, d5o96e1, d5o96f1, d5o96g1, d5o96h1
        automated match to d4e8ba2
        protein/RNA complex; complexed with sam
  11. 2492660Methanocaldococcus jannaschii [TaxId:2190] [189685] (2 PDB entries)
    1. Domain for 3ai9:
    2. Domains for 3aia:
      1. 2492661Domain d3aiaa1: 3aia A:2-200 [172204]
        Other proteins in same PDB: d3aiaa2, d3aiab2
        automated match to d2qmma1
        complexed with pbl, sam
      2. 2492662Domain d3aiab1: 3aia B:2-200 [172205]
        Other proteins in same PDB: d3aiaa2, d3aiab2
        automated match to d2qmma1
        complexed with pbl, sam
  12. 2492664Mycobacterium abscessus [TaxId:561007] [226092] (1 PDB entry)
  13. 2492667Pyrococcus horikoshii [TaxId:53953] [255719] (1 PDB entry)
  14. 2492670Staphylococcus aureus [TaxId:282458] [189168] (1 PDB entry)
  15. 2492672Streptococcus mutans [TaxId:210007] [189590] (1 PDB entry)
  16. 2492675Thermus thermophilus [TaxId:262724] [319700] (1 PDB entry)

More info for Protein automated matches from c.116.1.0: automated matches

Timeline for Protein automated matches from c.116.1.0: automated matches: