Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2151944Fold c.140: TTHA0583/YokD-like [110709] (1 superfamily)
    3 layers: a/b/a; mixed beta-sheet of 8 strands, order 78612354; strands 3, 4 and 8 are antiparallel to the rest
  4. 2151945Superfamily c.140.1: TTHA0583/YokD-like [110710] (3 families) (S)
  5. 2151961Family c.140.1.0: automated matches [191555] (1 protein)
    not a true family
  6. 2151962Protein automated matches [190957] (4 species)
    not a true protein

Species:

  1. 2151963Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [188566] (4 PDB entries)
    1. Domains for 3e4f:
      1. 2151964Domain d3e4fa_: 3e4f A: [174653]
        automated match to d2nygd1
        complexed with cit
      2. 2151965Domain d3e4fb_: 3e4f B: [174654]
        automated match to d2nygd1
        complexed with cit
    2. Domains for 3kzl:
      1. 2151970Domain d3kzla1: 3kzl A:1-263 [199686]
        Other proteins in same PDB: d3kzla2, d3kzlb2, d3kzlc2, d3kzld2
        automated match to d3kzld_
        complexed with aco, cl, epe, mg; mutant
      2. 2151971Domain d3kzlb1: 3kzl B:1-263 [199687]
        Other proteins in same PDB: d3kzla2, d3kzlb2, d3kzlc2, d3kzld2
        automated match to d3kzld_
        complexed with aco, cl, epe, mg; mutant
      3. 2151972Domain d3kzlc1: 3kzl C:1-263 [199688]
        Other proteins in same PDB: d3kzla2, d3kzlb2, d3kzlc2, d3kzld2
        automated match to d3kzld_
        complexed with aco, cl, epe, mg; mutant
      4. 2151973Domain d3kzld1: 3kzl D:1-263 [179832]
        Other proteins in same PDB: d3kzla2, d3kzlb2, d3kzlc2, d3kzld2
        automated match to d2nyga1
        complexed with aco, cl, epe, mg; mutant
    3. Domains for 3n0m:
      1. 2151974Domain d3n0ma1: 3n0m A:1-264 [213673]
        Other proteins in same PDB: d3n0ma2
        automated match to d3kzld_
        complexed with aco, cl; mutant
      2. 2151975Domain d3n0mb_: 3n0m B: [213674]
        Other proteins in same PDB: d3n0ma2
        automated match to d3kzld_
        complexed with aco, cl; mutant
    4. Domains for 3slb:
      1. 2151966Domain d3slba1: 3slb A:1-263 [200675]
        Other proteins in same PDB: d3slba2, d3slbb2, d3slbc2, d3slbd2
        automated match to d3kzld_
        complexed with aco, cps, cyt, epe, mg
      2. 2151967Domain d3slbb1: 3slb B:1-263 [196333]
        Other proteins in same PDB: d3slba2, d3slbb2, d3slbc2, d3slbd2
        automated match to d3kzld_
        complexed with aco, cps, cyt, epe, mg
      3. 2151968Domain d3slbc1: 3slb C:1-263 [200676]
        Other proteins in same PDB: d3slba2, d3slbb2, d3slbc2, d3slbd2
        automated match to d3kzld_
        complexed with aco, cps, cyt, epe, mg
      4. 2151969Domain d3slbd1: 3slb D:1-263 [200677]
        Other proteins in same PDB: d3slba2, d3slbb2, d3slbc2, d3slbd2
        automated match to d3kzld_
        complexed with aco, cps, cyt, epe, mg
  2. 2151976Bacillus anthracis [TaxId:198094] [189077] (3 PDB entries)
    1. Domains for 3ijw:
      1. 2151977Domain d3ijwa1: 3ijw A:1-264 [178352]
        Other proteins in same PDB: d3ijwa2
        automated match to d2nyga1
        complexed with aco, cl, mg
      2. 2151978Domain d3ijwb_: 3ijw B: [178353]
        Other proteins in same PDB: d3ijwa2
        automated match to d2nyga1
        complexed with aco, cl, mg
    2. Domains for 3n0s:
      1. 2151981Domain d3n0sa1: 3n0s A:1-263 [181760]
        Other proteins in same PDB: d3n0sa2, d3n0sb2, d3n0sc2, d3n0sd2
        automated match to d2nyga1
        complexed with aco, epe, mg; mutant
      2. 2151982Domain d3n0sb1: 3n0s B:1-263 [181761]
        Other proteins in same PDB: d3n0sa2, d3n0sb2, d3n0sc2, d3n0sd2
        automated match to d2nyga1
        complexed with aco, epe, mg; mutant
      3. 2151983Domain d3n0sc1: 3n0s C:1-263 [181762]
        Other proteins in same PDB: d3n0sa2, d3n0sb2, d3n0sc2, d3n0sd2
        automated match to d2nyga1
        complexed with aco, epe, mg; mutant
      4. 2151984Domain d3n0sd1: 3n0s D:1-263 [181763]
        Other proteins in same PDB: d3n0sa2, d3n0sb2, d3n0sc2, d3n0sd2
        automated match to d2nyga1
        complexed with aco, epe, mg; mutant
    3. Domains for 3slf:
      1. 2151979Domain d3slfa1: 3slf A:1-264 [200678]
        Other proteins in same PDB: d3slfa2
        automated match to d3ijwa_
        complexed with aco, cl, ura
      2. 2151980Domain d3slfb_: 3slf B: [196310]
        Other proteins in same PDB: d3slfa2
        automated match to d3ijwa_
        complexed with aco, cl, ura
  3. 2151985Streptomyces rubellomurinus [TaxId:359131] [256086] (1 PDB entry)
  4. 2271478Uncultured bacterium [TaxId:77133] [314779] (1 PDB entry)

More info for Protein automated matches from c.140.1.0: automated matches

Timeline for Protein automated matches from c.140.1.0: automated matches: