Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. Fold c.68: Nucleotide-diphospho-sugar transferases [53447] (1 superfamily)
    3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest
  4. Superfamily c.68.1: Nucleotide-diphospho-sugar transferases [53448] (20 families) (S)
  5. Family c.68.1.0: automated matches [191551] (1 protein)
    not a true family
  6. Protein automated matches [190951] (34 species)
    not a true protein

Species:

  1. Acinetobacter baumannii [TaxId:400667] [195102] (2 PDB entries)
    1. Domain for 3pol:
    2. Domain for 4fcu:
  2. Acinetobacter baumannii [TaxId:470] [334701] (1 PDB entry)
  3. Anaerococcus prevotii [TaxId:525919] [189838] (2 PDB entries)
    1. Domains for 3tzt:
      1. Domain d3tzta1: 3tzt A:1-273 [186042]
        Other proteins in same PDB: d3tzta2
        automated match to d1g9ra_
        complexed with cit, edo
      2. Domain d3tztb_: 3tzt B: [186043]
        Other proteins in same PDB: d3tzta2
        automated match to d1g9ra_
        complexed with cit, edo
    2. Domains for 4kt7:
      1. Domain d4kt7a1: 4kt7 A:1-230 [197272]
        Other proteins in same PDB: d4kt7a2
        automated match to d1w77a1
        complexed with cl, na
      2. Domain d4kt7b_: 4kt7 B: [202876]
        Other proteins in same PDB: d4kt7a2
        automated match to d4kt7a_
        complexed with cl, na
  4. Aquifex aeolicus [TaxId:63363] [196205] (1 PDB entry)
  5. Aspergillus fumigatus [TaxId:330879] [368106] (3 PDB entries)
    1. Domains for 6g9v:
      1. Domain d6g9va_: 6g9v A: [368139]
        automated match to d4bmaa_
        complexed with mg, ppv, ud1
      2. Domain d6g9vb_: 6g9v B: [368110]
        automated match to d4bmaa_
        complexed with mg, ppv, ud1
    2. Domains for 6g9y:
      1. Domain d6g9ya_: 6g9y A: [368107]
        automated match to d4bmaa_
        complexed with gn1
      2. Domain d6g9yb_: 6g9y B: [368138]
        automated match to d4bmaa_
        complexed with gn1
    3. Domains for 6tn3:
      1. Domain d6tn3a_: 6tn3 A: [383289]
        automated match to d4bmaa_
        complexed with gn1, po4
      2. Domain d6tn3b_: 6tn3 B: [383179]
        automated match to d4bmaa_
        complexed with gn1, po4
  6. Aspergillus fumigatus [TaxId:5085] [226664] (1 PDB entry)
  7. Bacillus subtilis [TaxId:224308] [321878] (3 PDB entries)
    1. Domains for 5ddt:
      1. Domain d5ddta_: 5ddt A: [321879]
        automated match to d4naka_
      2. Domain d5ddtb_: 5ddt B: [321907]
        automated match to d4naka_
    2. Domain for 5ddv:
    3. Domains for 5hs2:
      1. Domain d5hs2a_: 5hs2 A: [326483]
        automated match to d4naka_
        complexed with ctp, mg
      2. Domain d5hs2b_: 5hs2 B: [326553]
        automated match to d4naka_
        complexed with ctp, mg
  8. Bacillus subtilis [TaxId:655816] [237597] (1 PDB entry)
  9. Burkholderia thailandensis [TaxId:271848] [271140] (2 PDB entries)
    1. Domains for 4ys8:
      1. Domain d4ys8a_: 4ys8 A: [271144]
        Other proteins in same PDB: d4ys8b2, d4ys8c2, d4ys8d2
        automated match to d2xwna_
        complexed with act, gol
      2. Domain d4ys8b1: 4ys8 B:2-230 [271142]
        Other proteins in same PDB: d4ys8b2, d4ys8c2, d4ys8d2
        automated match to d2xwna_
        complexed with act, gol
      3. Domain d4ys8c1: 4ys8 C:2-231 [271141]
        Other proteins in same PDB: d4ys8b2, d4ys8c2, d4ys8d2
        automated match to d2xwna_
        complexed with act, gol
      4. Domain d4ys8d1: 4ys8 D:2-230 [271149]
        Other proteins in same PDB: d4ys8b2, d4ys8c2, d4ys8d2
        automated match to d2xwna_
        complexed with act, gol
    2. Domains for 4zdq:
      1. Domain d4zdqa_: 4zdq A: [272115]
        Other proteins in same PDB: d4zdqb2, d4zdqc2
        automated match to d2xwna_
        complexed with act, cad, ctp, gol, mg
      2. Domain d4zdqb1: 4zdq B:2-232 [272116]
        Other proteins in same PDB: d4zdqb2, d4zdqc2
        automated match to d2xwna_
        complexed with act, cad, ctp, gol, mg
      3. Domain d4zdqc1: 4zdq C:2-232 [272113]
        Other proteins in same PDB: d4zdqb2, d4zdqc2
        automated match to d2xwna_
        complexed with act, cad, ctp, gol, mg
      4. Domain d4zdqd_: 4zdq D: [272114]
        Other proteins in same PDB: d4zdqb2, d4zdqc2
        automated match to d2xwna_
        complexed with act, cad, ctp, gol, mg
  10. Clostridioides difficile [TaxId:1496] [334306] (2 PDB entries)
    1. Domain for 5uqk:
    2. Domain for 5uql:
  11. Clostridium difficile [TaxId:1496] [194953] (2 PDB entries)
    1. Domain for 4dmv:
    2. Domain for 4dmw:
  12. Clostridium difficile [TaxId:272563] [189893] (2 PDB entries)
    1. Domain for 3srz:
    2. Domain for 3ss1:
  13. Coxiella burnetii [TaxId:777] [189775] (1 PDB entry)
  14. Escherichia coli K-12 [TaxId:83333] [234046] (1 PDB entry)
  15. Francisella tularensis [TaxId:263] [256365] (1 PDB entry)
  16. Haemophilus influenzae [TaxId:727] [231294] (14 PDB entries)
    1. Domain for 2v0h:
    2. Domain for 2v0i:
    3. Domain for 2v0j:
    4. Domain for 2v0k:
    5. Domain for 2v0l:
    6. Domain for 2vd4:
    7. Domain for 2w0v:
    8. Domain for 2w0w:
    9. Domain for 4e1k:
    10. Domain for 4knr:
    11. Domain for 4knx:
    12. Domain for 4kpx:
    13. Domain for 4kpz:
    14. Domain for 4kql:
  17. Listeria monocytogenes [TaxId:265669] [188669] (1 PDB entry)
  18. Mycobacterium smegmatis [TaxId:1772] [226120] (1 PDB entry)
  19. Mycobacterium smegmatis [TaxId:246196] [226121] (1 PDB entry)
  20. Mycobacterium tuberculosis [225488] (1 PDB entry)
  21. Mycobacterium tuberculosis [TaxId:1773] [224907] (7 PDB entries)
    1. Domain for 3d8v:
    2. Domain for 3dj4:
    3. Domain for 4g3p:
    4. Domain for 4g3q:
    5. Domain for 4g3s:
    6. Domain for 4hcq:
    7. Domain for 4k6r:
  22. Mycobacterium tuberculosis [TaxId:419947] [225670] (2 PDB entries)
    1. Domain for 3dk5:
    2. Domain for 6ge9:
  23. Mycobacterium tuberculosis [TaxId:83332] [189483] (7 PDB entries)
    1. Domains for 2xwn:
      1. Domain d2xwna1: 2xwn A:5-229 [170440]
        Other proteins in same PDB: d2xwna2, d2xwnb2
        automated match to d1vpaa_
        complexed with ctp, mg
      2. Domain d2xwnb1: 2xwn B:5-229 [170441]
        Other proteins in same PDB: d2xwna2, d2xwnb2
        automated match to d1vpaa_
        complexed with ctp, mg
    2. Domains for 3okr:
      1. Domain d3okra_: 3okr A: [183103]
        automated match to d1vpaa_
      2. Domain d3okrb_: 3okr B: [183104]
        automated match to d1vpaa_
      3. Domain d3okrc_: 3okr C: [183105]
        automated match to d1vpaa_
      4. Domain d3okrd_: 3okr D: [183106]
        automated match to d1vpaa_
    3. Domains for 3q7u:
      1. Domain d3q7ua_: 3q7u A: [184264]
        automated match to d1vpaa_
        complexed with ctp, mg
      2. Domain d3q7ub_: 3q7u B: [184265]
        automated match to d1vpaa_
        complexed with ctp, mg
    4. Domains for 3q80:
      1. Domain d3q80a_: 3q80 A: [184270]
        automated match to d1vpaa_
        complexed with cdm, cl, mg
      2. Domain d3q80b_: 3q80 B: [184271]
        automated match to d1vpaa_
        complexed with cdm, cl, mg
    5. Domain for 3spt:
    6. Domain for 3st8:
    7. Domain for 4g87:
  24. Mycolicibacterium paratuberculosis [TaxId:262316] [394990] (1 PDB entry)
  25. Neosartorya fumigata [TaxId:330879] [368055] (1 PDB entry)
  26. Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [188718] (2 PDB entries)
    1. Domains for 2vsh:
      1. Domain d2vsha_: 2vsh A: [168786]
        automated match to d1vpaa_
        complexed with 1pe, ca, p6g, peg, pg4
      2. Domain d2vshb_: 2vsh B: [168787]
        automated match to d1vpaa_
        complexed with 1pe, ca, p6g, peg, pg4
    2. Domains for 2vsi:
      1. Domain d2vsia_: 2vsi A: [168788]
        automated match to d1vpaa_
        complexed with ca, cdf
      2. Domain d2vsib_: 2vsi B: [168789]
        automated match to d1vpaa_
        complexed with ca, cdf
  27. Pseudomonas aeruginosa, PA01 [TaxId:208964] [272021] (1 PDB entry)
  28. Pythium ultimum [TaxId:65071] [375682] (2 PDB entries)
    1. Domain for 6mw5:
    2. Domain for 6mw8:
  29. Staphylococcus aureus [TaxId:1280] [404012] (5 PDB entries)
    1. Domains for 6xhp:
      1. Domain d6xhpa_: 6xhp A: [404106]
        automated match to d2vsha_
        complexed with pg4
      2. Domain d6xhpb_: 6xhp B: [404080]
        automated match to d2vsha_
        complexed with pg4
    2. Domains for 6xhq:
      1. Domain d6xhqa_: 6xhq A: [404286]
        automated match to d2vsha_
        complexed with v2v
      2. Domain d6xhqb_: 6xhq B: [404058]
        automated match to d2vsha_
        complexed with v2v
    3. Domains for 6xhr:
      1. Domain d6xhra_: 6xhr A: [404028]
        automated match to d2vsha_
        complexed with scn
      2. Domain d6xhrb_: 6xhr B: [404050]
        automated match to d2vsha_
        complexed with scn
      3. Domain d6xhrc_: 6xhr C: [404103]
        automated match to d2vsha_
        complexed with scn
      4. Domain d6xhrd_: 6xhr D: [404027]
        automated match to d2vsha_
        complexed with scn
      5. Domain d6xhre_: 6xhr E: [404019]
        automated match to d2vsha_
        complexed with scn
      6. Domain d6xhrf_: 6xhr F: [404096]
        automated match to d2vsha_
        complexed with scn
    4. Domains for 6xhs:
      1. Domain d6xhsa_: 6xhs A: [404167]
        automated match to d2vsha_
        complexed with ctp, mg, scn
      2. Domain d6xhsb_: 6xhs B: [404336]
        automated match to d2vsha_
        complexed with ctp, mg, scn
      3. Domain d6xhsc_: 6xhs C: [404041]
        automated match to d2vsha_
        complexed with ctp, mg, scn
      4. Domain d6xhsd_: 6xhs D: [404042]
        automated match to d2vsha_
        complexed with ctp, mg, scn
      5. Domain d6xhse_: 6xhs E: [404013]
        automated match to d2vsha_
        complexed with ctp, mg, scn
      6. Domain d6xhsf_: 6xhs F: [404022]
        automated match to d2vsha_
        complexed with ctp, mg, scn
    5. Domains for 6xht:
      1. Domain d6xhta_: 6xht A: [404140]
        automated match to d2vsha_
        complexed with scn, v2v
      2. Domain d6xhtb_: 6xht B: [404125]
        automated match to d2vsha_
        complexed with scn, v2v
      3. Domain d6xhtc_: 6xht C: [404126]
        automated match to d2vsha_
        complexed with scn, v2v
      4. Domain d6xhtd_: 6xht D: [404239]
        automated match to d2vsha_
        complexed with scn, v2v
      5. Domain d6xhte_: 6xht E: [404117]
        automated match to d2vsha_
        complexed with scn, v2v
      6. Domain d6xhtf_: 6xht F: [404110]
        automated match to d2vsha_
        complexed with scn, v2v
  30. Stenotrophomonas maltophilia [TaxId:522373] [390377] (1 PDB entry)
  31. Thermus thermophilus HB8 [TaxId:300852] [225278] (1 PDB entry)
  32. Vibrio cholerae [TaxId:666] [370249] (2 PDB entries)
    1. Domains for 6ifd:
      1. Domain d6ifda_: 6ifd A: [370277]
        Other proteins in same PDB: d6ifdb2
        automated match to d1eyra_
        complexed with ca, cdp, edo, mg, pg4, pge
      2. Domain d6ifdb1: 6ifd B:1-233 [370250]
        Other proteins in same PDB: d6ifdb2
        automated match to d1eyra_
        complexed with ca, cdp, edo, mg, pg4, pge
      3. Domain d6ifdc_: 6ifd C: [370267]
        Other proteins in same PDB: d6ifdb2
        automated match to d1eyra_
        complexed with ca, cdp, edo, mg, pg4, pge
      4. Domain d6ifdd_: 6ifd D: [370252]
        Other proteins in same PDB: d6ifdb2
        automated match to d1eyra_
        complexed with ca, cdp, edo, mg, pg4, pge
    2. Domains for 6ifi:
      1. Domain d6ifia_: 6ifi A: [370272]
        automated match to d1eyra_
        complexed with ca
      2. Domain d6ifib_: 6ifi B: [370345]
        automated match to d1eyra_
        complexed with ca
  33. Yeast (Candida albicans) [TaxId:5476] [188550] (4 PDB entries)
    1. Domain for 2yqc:
    2. Domains for 2yqh:
      1. Domain d2yqha_: 2yqh A: [170865]
        automated match to d1jv1a_
        complexed with gn1, gol, mg, so4
      2. Domain d2yqhb_: 2yqh B: [170866]
        automated match to d1jv1a_
        complexed with gn1, gol, mg, so4
    3. Domains for 2yqj:
      1. Domain d2yqja_: 2yqj A: [170867]
        automated match to d1jv1a_
        complexed with gol, mg, so4, ud1
      2. Domain d2yqjb_: 2yqj B: [170868]
        automated match to d1jv1a_
        complexed with gol, mg, so4, ud1
    4. Domain for 2yqs:
  34. Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [419815] (1 PDB entry)

More info for Protein automated matches from c.68.1.0: automated matches

Timeline for Protein automated matches from c.68.1.0: automated matches: