Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2912237Fold c.92: Chelatase-like [53799] (3 superfamilies)
    duplication: tandem repeat of two domains; 3 layers (a/b/a); parallel beta-sheet of 4 strands, order 2134
  4. 2912348Superfamily c.92.2: 'Helical backbone' metal receptor [53807] (5 families) (S)
    contains a long alpha helical insertion in the interdomain linker
  5. 2912730Family c.92.2.0: automated matches [191548] (1 protein)
    not a true family
  6. 2912731Protein automated matches [190944] (40 species)
    not a true protein

Species:

  1. 2912732Acinetobacter baumannii [TaxId:470] [360444] (1 PDB entry)
  2. 2912735Azotobacter vinelandii [TaxId:322710] [256020] (1 PDB entry)
  3. 2912740Bacillus cereus [TaxId:1396] [233693] (1 PDB entry)
  4. 2912742Bacillus subtilis [TaxId:1423] [193874] (1 PDB entry)
  5. 2912745Bacillus subtilis [TaxId:224308] [232282] (2 PDB entries)
    1. Domain for 3g9q:
    2. Domains for 3gfv:
      1. 2912746Domain d3gfva1: 3gfv A:14-297 [232283]
        Other proteins in same PDB: d3gfva2, d3gfvb2
        automated match to d3tefa_
        complexed with asn, po4
      2. 2912747Domain d3gfvb1: 3gfv B:14-297 [239320]
        Other proteins in same PDB: d3gfva2, d3gfvb2
        automated match to d3gfva_
        complexed with asn, po4
  6. 2912749Burkholderia cenocepacia [TaxId:216591] [335925] (3 PDB entries)
    1. Domains for 5giz:
      1. 2912750Domain d5giza1: 5giz A:40-305 [335927]
        Other proteins in same PDB: d5giza2, d5gizb2
        automated match to d2r7ab_
        complexed with cl, so4
      2. 2912751Domain d5gizb1: 5giz B:40-305 [336051]
        Other proteins in same PDB: d5giza2, d5gizb2
        automated match to d2r7ab_
        complexed with cl, so4
    2. Domains for 5y89:
      1. 2912754Domain d5y89a1: 5y89 A:40-305 [340193]
        Other proteins in same PDB: d5y89a2, d5y89b2
        automated match to d2r7ab_
        complexed with act, hem, so4
      2. 2912755Domain d5y89b1: 5y89 B:40-305 [340179]
        Other proteins in same PDB: d5y89a2, d5y89b2
        automated match to d2r7ab_
        complexed with act, hem, so4
    3. Domains for 5y8a:
      1. 2912752Domain d5y8aa1: 5y8a A:40-305 [340188]
        Other proteins in same PDB: d5y8aa2, d5y8ab2
        automated match to d2r7ab_
        complexed with ca, hem
      2. 2912753Domain d5y8ab1: 5y8a B:40-305 [340183]
        Other proteins in same PDB: d5y8aa2, d5y8ab2
        automated match to d2r7ab_
        complexed with ca, hem
  7. 2912756Candidatus liberibacter [TaxId:34021] [270653] (3 PDB entries)
    1. Domain for 4udn:
    2. Domain for 4udo:
    3. Domain for 5afs:
  8. 2912760Candidatus liberibacter [TaxId:537021] [270219] (3 PDB entries)
    1. Domain for 4cl2:
    2. Domain for 5zha:
    3. Domain for 6ixi:
  9. 2912764Chlamydia trachomatis [TaxId:813] [376243] (1 PDB entry)
  10. 2912766Escherichia coli [TaxId:562] [193890] (6 PDB entries)
    1. Domains for 2ogw:
      1. 2912769Domain d2ogwa_: 2ogw A: [205270]
        automated match to d2xqva_
        complexed with zn
      2. 2912770Domain d2ogwb_: 2ogw B: [205271]
        automated match to d2xqva_
        complexed with zn
    2. Domains for 2osv:
      1. 2912767Domain d2osva_: 2osv A: [198224]
        automated match to d2osvb_
        complexed with zn
      2. 2912768Domain d2osvb_: 2osv B: [193891]
        automated match to d2xy4a_
        complexed with zn
    3. Domains for 2prs:
      1. 2912771Domain d2prsa_: 2prs A: [205600]
        automated match to d2osvb_
        complexed with ipa, zn
      2. 2912772Domain d2prsb_: 2prs B: [205601]
        automated match to d2osvb_
        complexed with ipa, zn
    4. Domains for 2ps0:
      1. 2912773Domain d2ps0a_: 2ps0 A: [205602]
        automated match to d2osvb_
        complexed with zn
      2. 2912774Domain d2ps0b_: 2ps0 B: [205603]
        automated match to d2osvb_
        complexed with zn
    5. Domains for 2ps3:
      1. 2912777Domain d2ps3a_: 2ps3 A: [205612]
        automated match to d2osvb_
      2. 2912778Domain d2ps3b_: 2ps3 B: [205613]
        automated match to d2osvb_
    6. Domains for 2ps9:
      1. 2912775Domain d2ps9a_: 2ps9 A: [205624]
        automated match to d2osvb_
        complexed with co
      2. 2912776Domain d2ps9b_: 2ps9 B: [205625]
        automated match to d2osvb_
        complexed with co
  11. 2912779Escherichia coli [TaxId:83333] [256409] (3 PDB entries)
    1. Domain for 2m6k:
    2. Domain for 2m6l:
    3. Domains for 3tlk:
      1. 2912780Domain d3tlka1: 3tlk A:27-318 [265397]
        Other proteins in same PDB: d3tlka2, d3tlkc2
        automated match to d2m6ka_
        complexed with dio, eb4, fe
      2. 2912781Domain d3tlkb_: 3tlk B: [265398]
        Other proteins in same PDB: d3tlka2, d3tlkc2
        automated match to d2m6ka_
        complexed with dio, eb4, fe
      3. 2912782Domain d3tlkc1: 3tlk C:28-318 [265399]
        Other proteins in same PDB: d3tlka2, d3tlkc2
        automated match to d2m6ka_
        complexed with dio, eb4, fe
  12. 2912785Gluconacetobacter diazotrophicus [TaxId:272568] [322644] (2 PDB entries)
    1. Domains for 5koh:
      1. 2912786Domain d5kohb_: 5koh B: [323009]
        Other proteins in same PDB: d5koha_, d5kohc_
        automated match to d3u7qb_
        complexed with clf, fe, hca, ics, mpd, mrd
      2. 2912787Domain d5kohd_: 5koh D: [323003]
        Other proteins in same PDB: d5koha_, d5kohc_
        automated match to d3u7qb_
        complexed with clf, fe, hca, ics, mpd, mrd
    2. Domains for 5koj:
      1. 2912788Domain d5kojb_: 5koj B: [322645]
        Other proteins in same PDB: d5koja_, d5kojc_
        automated match to d3u7qb_
        complexed with clf, fe, hca, ics
      2. 2912789Domain d5kojd_: 5koj D: [322766]
        Other proteins in same PDB: d5koja_, d5kojc_
        automated match to d3u7qb_
        complexed with clf, fe, hca, ics
  13. 2912790Liberibacter asiaticus [TaxId:537021] [358365] (3 PDB entries)
    1. Domain for 5z2j:
    2. Domain for 5z2k:
    3. Domain for 5z35:
  14. 2912794Listeria monocytogenes [TaxId:169963] [314876] (3 PDB entries)
    1. Domain for 5hx7:
    2. Domain for 5i4k:
    3. Domain for 5jpd:
  15. 2912798Paracoccus denitrificans [TaxId:318586] [270856] (4 PDB entries)
    1. Domains for 5kzj:
      1. 2912803Domain d5kzja_: 5kzj A: [336492]
        automated match to d3hh8a_
        complexed with gol, zn; mutant
      2. 2912804Domain d5kzjb_: 5kzj B: [336518]
        automated match to d3hh8a_
        complexed with gol, zn; mutant
    2. Domains for 5w56:
      1. 2912801Domain d5w56a_: 5w56 A: [339363]
        automated match to d3hh8a_
        complexed with gol, na
      2. 2912802Domain d5w56b_: 5w56 B: [339364]
        automated match to d3hh8a_
        complexed with gol, na
    3. Domains for 5w57:
      1. 2912805Domain d5w57a_: 5w57 A: [339361]
        automated match to d3hh8a_
        complexed with zn
      2. 2912806Domain d5w57b_: 5w57 B: [339362]
        automated match to d3hh8a_
        complexed with zn
    4. Domains for 6xpn:
      1. 2912799Domain d6xpna_: 6xpn A: [393491]
        automated match to d3hh8a_
        complexed with zn; mutant
      2. 2912800Domain d6xpnb_: 6xpn B: [393443]
        automated match to d3hh8a_
        complexed with zn; mutant
  16. 2912807Pseudomonas aeruginosa [TaxId:208964] [372420] (3 PDB entries)
    1. Domain for 6r3z:
    2. Domains for 6r44:
      1. 2912809Domain d6r44a1: 6r44 A:41-317 [372421]
        Other proteins in same PDB: d6r44a2, d6r44b2
        automated match to d3cx3a_
        complexed with ni
      2. 2912810Domain d6r44b1: 6r44 B:42-317 [372435]
        Other proteins in same PDB: d6r44a2, d6r44b2
        automated match to d3cx3a_
        complexed with ni
    3. Domains for 6ru4:
      1. 2912811Domain d6ru4a_: 6ru4 A: [372468]
        automated match to d3cx3a_
        complexed with edo, mn, peg
      2. 2912812Domain d6ru4b_: 6ru4 B: [372469]
        automated match to d3cx3a_
        complexed with edo, mn, peg
      3. 2912813Domain d6ru4c_: 6ru4 C: [372466]
        automated match to d3cx3a_
        complexed with edo, mn, peg
      4. 2912814Domain d6ru4d_: 6ru4 D: [372442]
        automated match to d3cx3a_
        complexed with edo, mn, peg
  17. 2912815Pseudomonas aeruginosa [TaxId:287] [372428] (2 PDB entries)
    1. Domains for 6r5s:
      1. 2912818Domain d6r5sa1: 6r5s A:42-317 [372476]
        Other proteins in same PDB: d6r5sa2, d6r5sb2
        automated match to d3cx3a_
        complexed with edo, fe2
      2. 2912819Domain d6r5sb1: 6r5s B:42-317 [372429]
        Other proteins in same PDB: d6r5sa2, d6r5sb2
        automated match to d3cx3a_
        complexed with edo, fe2
    2. Domains for 6r6k:
      1. 2912816Domain d6r6ka_: 6r6k A: [372457]
        automated match to d3cx3a_
        complexed with edo, gol, na, peg; mutant
      2. 2912817Domain d6r6kb_: 6r6k B: [372473]
        automated match to d3cx3a_
        complexed with edo, gol, na, peg; mutant
  18. 2912820Roseiflexus sp. [TaxId:357808] [335988] (2 PDB entries)
    1. Domain for 5gj3:
    2. Domain for 5y8b:
  19. 2912823Salmonella enterica [TaxId:28901] [228286] (1 PDB entry)
  20. 2912825Salmonella enterica [TaxId:90371] [226119] (1 PDB entry)
  21. 2912827Salmonella typhimurium [TaxId:90371] [189939] (2 PDB entries)
    1. Domain for 2xqv:
    2. Domain for 2xy4:
  22. 2912830Shigella dysenteriae [TaxId:622] [267803] (2 PDB entries)
    1. Domains for 2r7a:
      1. 2912835Domain d2r7aa_: 2r7a A: [264495]
        automated match to d4m7oa_
        complexed with hem
      2. 2912836Domain d2r7ab_: 2r7a B: [264496]
        automated match to d4m7oa_
        complexed with hem
      3. 2912837Domain d2r7ac_: 2r7a C: [264497]
        automated match to d4m7oa_
        complexed with hem
      4. 2912838Domain d2r7ad_: 2r7a D: [264498]
        automated match to d4m7oa_
        complexed with hem
    2. Domains for 2rg7:
      1. 2912831Domain d2rg7a_: 2rg7 A: [264501]
        automated match to d4m7oa_
      2. 2912832Domain d2rg7b_: 2rg7 B: [264502]
        automated match to d4m7oa_
      3. 2912833Domain d2rg7c_: 2rg7 C: [264503]
        automated match to d4m7oa_
      4. 2912834Domain d2rg7d_: 2rg7 D: [264504]
        automated match to d4m7oa_
  23. 2912839Staphylococcus aureus [TaxId:1280] [267935] (3 PDB entries)
    1. Domains for 4fil:
      1. 2912843Domain d4fila_: 4fil A: [266255]
        automated match to d3g9qa_
        complexed with 0ue, edo, zn
      2. 2912844Domain d4filb_: 4fil B: [266256]
        automated match to d3g9qa_
        complexed with 0ue, edo, zn
      3. 2912845Domain d4filc_: 4fil C: [266257]
        automated match to d3g9qa_
        complexed with 0ue, edo, zn
      4. 2912846Domain d4fild_: 4fil D: [266258]
        automated match to d3g9qa_
        complexed with 0ue, edo, zn
    2. Domains for 4fkm:
      1. 2912841Domain d4fkma_: 4fkm A: [266259]
        automated match to d3g9qa_
      2. 2912842Domain d4fkmb_: 4fkm B: [266260]
        automated match to d3g9qa_
    3. Domain for 5hdq:
  24. 2912847Staphylococcus aureus [TaxId:158878] [261218] (2 PDB entries)
    1. Domain for 4nno:
    2. Domains for 4nnp:
      1. 2912849Domain d4nnpa_: 4nnp A: [261510]
        Other proteins in same PDB: d4nnph_, d4nnpl1, d4nnpl2, d4nnpx_, d4nnpy1, d4nnpy2
        automated match to d4k3va_
      2. 2912850Domain d4nnpb_: 4nnp B: [261511]
        Other proteins in same PDB: d4nnph_, d4nnpl1, d4nnpl2, d4nnpx_, d4nnpy1, d4nnpy2
        automated match to d4k3va_
  25. 2912851Staphylococcus aureus [TaxId:158879] [225672] (3 PDB entries)
    1. Domain for 3eiw:
    2. Domain for 3eix:
    3. Domain for 3mwf:
  26. 2912855Staphylococcus aureus [TaxId:426430] [225834] (2 PDB entries)
    1. Domain for 3lhs:
    2. Domains for 3li2:
      1. 2912857Domain d3li2a1: 3li2 A:39-323 [212895]
        Other proteins in same PDB: d3li2a2, d3li2b2
        automated match to d3tefa_
        complexed with act, fe, sf8, zn
      2. 2912858Domain d3li2b1: 3li2 B:39-324 [212896]
        Other proteins in same PDB: d3li2a2, d3li2b2
        automated match to d3tefa_
        complexed with act, fe, sf8, zn
  27. 2912859Staphylococcus aureus [TaxId:869816] [235084] (1 PDB entry)
  28. 2912862Staphylococcus epidermidis [TaxId:176280] [256363] (1 PDB entry)
  29. 2912864Staphylococcus pseudintermedius [TaxId:283734] [260726] (2 PDB entries)
    1. Domains for 4oxq:
      1. 2912867Domain d4oxqa_: 4oxq A: [307965]
        automated match to d1xvla1
        complexed with zn
      2. 2912868Domain d4oxqb_: 4oxq B: [307966]
        automated match to d1xvla1
        complexed with zn
    2. Domains for 4oxr:
      1. 2912865Domain d4oxra_: 4oxr A: [260727]
        automated match to d1xvla1
        complexed with mn
      2. 2912866Domain d4oxrb_: 4oxr B: [300133]
        automated match to d1xvla1
        complexed with mn
  30. 2912869Streptococcus agalactiae [TaxId:1311] [196503] (1 PDB entry)
  31. 2912872Streptococcus agalactiae [TaxId:208435] [227693] (1 PDB entry)
  32. 2912875Streptococcus pneumoniae [TaxId:171101] [188513] (2 PDB entries)
    1. Domains for 3cx3:
      1. 2912880Domain d3cx3a_: 3cx3 A: [173521]
        automated match to d1xvla1
        complexed with na, zn
      2. 2912881Domain d3cx3b_: 3cx3 B: [173522]
        automated match to d1xvla1
        complexed with na, zn
    2. Domains for 7jj8:
      1. 2912876Domain d7jj8a_: 7jj8 A: [396979]
        automated match to d2o1eb_
        complexed with zn
      2. 2912877Domain d7jj8b_: 7jj8 B: [396977]
        automated match to d2o1eb_
        complexed with zn
      3. 2912878Domain d7jj8c_: 7jj8 C: [396973]
        automated match to d2o1eb_
        complexed with zn
      4. 2912879Domain d7jj8d_: 7jj8 D: [396978]
        automated match to d2o1eb_
        complexed with zn
  33. 2912882Streptococcus pneumoniae [TaxId:637987] [234961] (1 PDB entry)
  34. 2912884Streptococcus pyogenes [TaxId:1314] [196552] (1 PDB entry)
  35. 2912887Streptococcus suis [TaxId:391295] [189905] (1 PDB entry)
  36. 2912891Synechocystis sp. [TaxId:1148] [226531] (1 PDB entry)
  37. 2912895Vibrio cholerae [TaxId:345073] [330007] (2 PDB entries)
    1. Domains for 5ggy:
      1. 2912897Domain d5ggya1: 5ggy A:55-319 [330008]
        Other proteins in same PDB: d5ggya2, d5ggyn2
        automated match to d1efdn_
        complexed with cl
      2. 2912898Domain d5ggyn1: 5ggy N:55-318 [330036]
        Other proteins in same PDB: d5ggya2, d5ggyn2
        automated match to d1efdn_
        complexed with cl
    2. Domain for 5khl:
  38. 2912899Vibrio cholerae [TaxId:666] [193580] (3 PDB entries)
    1. Domain for 3r5s:
    2. Domain for 3r5t:
    3. Domain for 3tef:
  39. 2912903Yersinia pestis [TaxId:360102] [311322] (1 PDB entry)
  40. 2912906Yersinia pestis [TaxId:632] [311315] (1 PDB entry)

More info for Protein automated matches from c.92.2.0: automated matches

Timeline for Protein automated matches from c.92.2.0: automated matches: