SCOPe 2.06: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.06
Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
Fold d.110: Profilin-like [55769] (10 superfamilies)
core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
Superfamily d.110.3: PYP-like sensor domain (PAS domain) [55785] (8 families)
alpha-beta(2)-alpha(2)-beta(3)
Family d.110.3.6: Flavin-binding PAS domain [88853] (4 proteins)
contains PAC motif
Protein automated matches [190943] (2 species)
not a true protein

Species:

Human (Homo sapiens) [TaxId:9606] [196723] (5 PDB entries)
1. Domain for 2l0w:
  - Domain d2l0wa_: 2l0w A: [242728]
    automated match to d4hp9a_
2. Domain for 2l1m:
  - Domain d2l1ma_: 2l1m A: [242737]
    automated match to d4hp9a_
3. Domain for 2l4r:
  - Domain d2l4ra_: 2l4r A: [242765]
    automated match to d4hp9a_
4. Domain for 4hp9:
  - Domain d4hp9a_: 4hp9 A: [196724]
    automated match to d1bywa_
5. Domain for 4hqa:
  - Domain d4hqaa_: 4hqa A: [222712]
    automated match to d1bywa_
Thale cress (Arabidopsis thaliana) [TaxId:3702] [188509] (10 PDB entries)
1. Domains for 2z6d:
  1. Domain d2z6da_: 2z6d A: [171070]
    automated match to d1n9la_
    complexed with fmn
  2. Domain d2z6db_: 2z6d B: [171071]
    automated match to d1n9la_
    complexed with fmn
2. Domain for 4eep:
  - Domain d4eepa_: 4eep A: [195382]
    automated match to d1jnua_
    complexed with fmn
3. Domain for 4eer:
  - Domain d4eera_: 4eer A: [195379]
    automated match to d1jnua_
    complexed with fmn; mutant
4. Domain for 4ees:
  - Domain d4eesa_: 4ees A: [195380]
    automated match to d1jnua_
    complexed with fmn
5. Domains for 4eet:
  1. Domain d4eetb_: 4eet B: [220461]
    automated match to d4eesa_
    complexed with fmn
  2. Domain d4eetd_: 4eet D: [220462]
    automated match to d4eesa_
    complexed with fmn
6. Domain for 4eeu:
  - Domain d4eeua1: 4eeu A:388-494 [195381]
    Other proteins in same PDB: d4eeua2
    automated match to d1jnua_
    complexed with fmn
7. Domains for 4nxb:
  1. Domain d4nxba1: 4nxb A:389-496 [266989]
    Other proteins in same PDB: d4nxba2
    automated match to d4eesa_
    complexed with fmn
  2. Domain d4nxbb_: 4nxb B: [266990]
    Other proteins in same PDB: d4nxba2
    automated match to d4eesa_
    complexed with fmn
8. Domains for 4nxe:
  1. Domain d4nxea_: 4nxe A: [266991]
    automated match to d4eesa_
    complexed with fmn
  2. Domain d4nxeb_: 4nxe B: [266992]
    automated match to d4eesa_
    complexed with fmn
9. Domains for 4nxf:
  1. Domain d4nxfa_: 4nxf A: [259840]
    automated match to d4eesa_
    complexed with fmn
  2. Domain d4nxfb_: 4nxf B: [259841]
    automated match to d4eesa_
    complexed with fmn
10. Domains for 4nxg:
  1. Domain d4nxga_: 4nxg A: [266993]
    automated match to d4eesa_
    complexed with fmn
  2. Domain d4nxgb_: 4nxg B: [266994]
    automated match to d4eesa_
    complexed with fmn

More info for Protein automated matches from d.110.3.6: Flavin-binding PAS domain

Timeline for Protein automated matches from d.110.3.6: Flavin-binding PAS domain:

Protein automated matches from d.110.3.6: Flavin-binding PAS domain first appeared in SCOPe 2.01
Protein automated matches from d.110.3.6: Flavin-binding PAS domain appears in SCOPe 2.05
Protein automated matches from d.110.3.6: Flavin-binding PAS domain appears in SCOPe 2.07
Protein automated matches from d.110.3.6: Flavin-binding PAS domain appears in the current release, SCOPe 2.08