Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2958618Fold d.79: Bacillus chorismate mutase-like [55297] (9 superfamilies)
    core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest
  4. 2958619Superfamily d.79.1: YjgF-like [55298] (4 families) (S)
    forms trimers with three closely packed beta-sheets; possibly related to the IspF (d.79.5) and 4'-phosphopantetheinyl transferase superfamilies (d.150.1)
  5. 2958881Family d.79.1.0: automated matches [191544] (1 protein)
    not a true family
  6. 2958882Protein automated matches [190935] (24 species)
    not a true protein

Species:

  1. 2958883Agrobacterium tumefaciens [TaxId:176299] [188481] (1 PDB entry)
  2. 2958896Azorhizobium caulinodans [TaxId:438753] [419914] (1 PDB entry)
  3. 2958899Bacillus subtilis [TaxId:645657] [356164] (4 PDB entries)
    1. Domains for 5y6u:
      1. 2958900Domain d5y6ua_: 5y6u A: [356169]
        automated match to d1j7ha_
        complexed with acy
      2. 2958901Domain d5y6ub_: 5y6u B: [356165]
        automated match to d1j7ha_
        complexed with acy
      3. 2958902Domain d5y6uc_: 5y6u C: [356313]
        automated match to d1j7ha_
        complexed with acy
    2. Domains for 7cd2:
      1. 2958912Domain d7cd2a_: 7cd2 A: [398662]
        automated match to d1j7ha_
        mutant
      2. 2958913Domain d7cd2b_: 7cd2 B: [398684]
        automated match to d1j7ha_
        mutant
      3. 2958914Domain d7cd2c_: 7cd2 C: [398677]
        automated match to d1j7ha_
        mutant
      4. 2958915Domain d7cd2d_: 7cd2 D: [398635]
        automated match to d1j7ha_
        mutant
      5. 2958916Domain d7cd2e_: 7cd2 E: [398626]
        automated match to d1j7ha_
        mutant
      6. 2958917Domain d7cd2f_: 7cd2 F: [398655]
        automated match to d1j7ha_
        mutant
      7. 2958918Domain d7cd2g_: 7cd2 G: [398633]
        automated match to d1j7ha_
        mutant
      8. 2958919Domain d7cd2h_: 7cd2 H: [398627]
        automated match to d1j7ha_
        mutant
      9. 2958920Domain d7cd2i_: 7cd2 I: [398644]
        automated match to d1j7ha_
        mutant
      10. 2958921Domain d7cd2j_: 7cd2 J: [398661]
        automated match to d1j7ha_
        mutant
      11. 2958922Domain d7cd2k_: 7cd2 K: [398610]
        automated match to d1j7ha_
        mutant
      12. 2958923Domain d7cd2l_: 7cd2 L: [398619]
        automated match to d1j7ha_
        mutant
      13. 2958924Domain d7cd2m_: 7cd2 M: [398636]
        automated match to d1j7ha_
        mutant
      14. 2958925Domain d7cd2n_: 7cd2 N: [398621]
        automated match to d1j7ha_
        mutant
      15. 2958926Domain d7cd2o_: 7cd2 O: [398658]
        automated match to d1j7ha_
        mutant
      16. 2958927Domain d7cd2p_: 7cd2 P: [398649]
        automated match to d1j7ha_
        mutant
      17. 2958928Domain d7cd2q_: 7cd2 Q: [398617]
        automated match to d1j7ha_
        mutant
      18. 2958929Domain d7cd2r_: 7cd2 R: [398659]
        automated match to d1j7ha_
        mutant
      19. 2958930Domain d7cd2s_: 7cd2 S: [398689]
        automated match to d1j7ha_
        mutant
      20. 2958931Domain d7cd2t_: 7cd2 T: [398639]
        automated match to d1j7ha_
        mutant
    3. Domains for 7cd3:
      1. 2958907Domain d7cd3a_: 7cd3 A: [398729]
        automated match to d1j7ha_
        complexed with gol, so4; mutant
      2. 2958908Domain d7cd3b_: 7cd3 B: [398674]
        automated match to d1j7ha_
        complexed with gol, so4; mutant
      3. 2958909Domain d7cd3c_: 7cd3 C: [398673]
        automated match to d1j7ha_
        complexed with gol, so4; mutant
      4. 2958910Domain d7cd3d_: 7cd3 D: [398703]
        automated match to d1j7ha_
        complexed with gol, so4; mutant
      5. 2958911Domain d7cd3e_: 7cd3 E: [398670]
        automated match to d1j7ha_
        complexed with gol, so4; mutant
    4. Domains for 7cd4:
      1. 2958903Domain d7cd4a_: 7cd4 A: [398589]
        automated match to d1j7ha_
        complexed with btb, cl, mg, zn; mutant
      2. 2958904Domain d7cd4b_: 7cd4 B: [398600]
        automated match to d1j7ha_
        complexed with btb, cl, mg, zn; mutant
      3. 2958905Domain d7cd4c_: 7cd4 C: [398592]
        automated match to d1j7ha_
        complexed with btb, cl, mg, zn; mutant
      4. 2958906Domain d7cd4d_: 7cd4 D: [398586]
        automated match to d1j7ha_
        complexed with btb, cl, mg, zn; mutant
  4. 2958932Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [226153] (1 PDB entry)
  5. 2958934Entamoeba (Entamoeba histolytica) [TaxId:5759] [225891] (1 PDB entry)
  6. 2958941Entamoeba histolytica [TaxId:294381] [225859] (2 PDB entries)
    1. Domain for 3m1x:
    2. Domains for 3m4s:
      1. 2958943Domain d3m4sa_: 3m4s A: [213126]
        automated match to d3v4dc_
        complexed with cl
      2. 2958944Domain d3m4sb_: 3m4s B: [213127]
        automated match to d3v4dc_
        complexed with cl
      3. 2958945Domain d3m4sc_: 3m4s C: [213128]
        automated match to d3v4dc_
        complexed with cl
      4. 2958946Domain d3m4sd_: 3m4s D: [213129]
        automated match to d3v4dc_
        complexed with cl
      5. 2958947Domain d3m4se_: 3m4s E: [213130]
        automated match to d3v4dc_
        complexed with cl
      6. 2958948Domain d3m4sf_: 3m4s F: [213131]
        automated match to d3v4dc_
        complexed with cl
  7. 2958949Enterobacter cloacae [TaxId:550] [419977] (1 PDB entry)
  8. 2958951Escherichia coli [TaxId:217992] [196085] (1 PDB entry)
  9. 2958958Frankia sp. [TaxId:985774] [419964] (3 PDB entries)
    1. Domains for 5hy0:
      1. 2958959Domain d5hy0a_: 5hy0 A: [414871]
        automated match to d4bvsa_
        complexed with gol
      2. 2958960Domain d5hy0b_: 5hy0 B: [414872]
        automated match to d4bvsa_
        complexed with gol
      3. 2958961Domain d5hy0c_: 5hy0 C: [414873]
        automated match to d4bvsa_
        complexed with gol
      4. 2958962Domain d5hy0d_: 5hy0 D: [414874]
        automated match to d4bvsa_
        complexed with gol
    2. Domains for 5hy2:
      1. 2958971Domain d5hy2a_: 5hy2 A: [414876]
        automated match to d4bvsa_
      2. 2958972Domain d5hy2b_: 5hy2 B: [414877]
        automated match to d4bvsa_
    3. Domains for 5hy4:
      1. 2958963Domain d5hy4a_: 5hy4 A: [414878]
        automated match to d4bvsa_
      2. 2958964Domain d5hy4b_: 5hy4 B: [414879]
        automated match to d4bvsa_
      3. 2958965Domain d5hy4c_: 5hy4 C: [414880]
        automated match to d4bvsa_
      4. 2958966Domain d5hy4d_: 5hy4 D: [414881]
        automated match to d4bvsa_
      5. 2958967Domain d5hy4e_: 5hy4 E: [414882]
        automated match to d4bvsa_
      6. 2958968Domain d5hy4f_: 5hy4 F: [414883]
        automated match to d4bvsa_
      7. 2958969Domain d5hy4g_: 5hy4 G: [414884]
        automated match to d4bvsa_
      8. 2958970Domain d5hy4h_: 5hy4 H: [414885]
        automated match to d4bvsa_
  10. 2958973Mycobacterium tuberculosis [TaxId:83332] [225825] (1 PDB entry)
  11. 2958975Neisseria meningitidis [TaxId:491] [346368] (2 PDB entries)
    1. Domains for 3kjj:
      1. 2958976Domain d3kjja1: 3kjj A:1-116 [344863]
        Other proteins in same PDB: d3kjja2, d3kjjb2, d3kjjc2, d3kjjd2, d3kjje2, d3kjjf2, d3kjjh2, d3kjjj2, d3kjjk2
        automated match to d5hp7a_
        complexed with gol
      2. 2958977Domain d3kjjb1: 3kjj B:1-117 [344865]
        Other proteins in same PDB: d3kjja2, d3kjjb2, d3kjjc2, d3kjjd2, d3kjje2, d3kjjf2, d3kjjh2, d3kjjj2, d3kjjk2
        automated match to d5hp7a_
        complexed with gol
      3. 2958978Domain d3kjjc1: 3kjj C:1-117 [344867]
        Other proteins in same PDB: d3kjja2, d3kjjb2, d3kjjc2, d3kjjd2, d3kjje2, d3kjjf2, d3kjjh2, d3kjjj2, d3kjjk2
        automated match to d5hp7a_
        complexed with gol
      4. 2958979Domain d3kjjd1: 3kjj D:1-117 [344869]
        Other proteins in same PDB: d3kjja2, d3kjjb2, d3kjjc2, d3kjjd2, d3kjje2, d3kjjf2, d3kjjh2, d3kjjj2, d3kjjk2
        automated match to d5hp7a_
        complexed with gol
      5. 2958980Domain d3kjje1: 3kjj E:1-115 [344871]
        Other proteins in same PDB: d3kjja2, d3kjjb2, d3kjjc2, d3kjjd2, d3kjje2, d3kjjf2, d3kjjh2, d3kjjj2, d3kjjk2
        automated match to d5hp7a_
        complexed with gol
      6. 2958981Domain d3kjjf1: 3kjj F:1-116 [344873]
        Other proteins in same PDB: d3kjja2, d3kjjb2, d3kjjc2, d3kjjd2, d3kjje2, d3kjjf2, d3kjjh2, d3kjjj2, d3kjjk2
        automated match to d5hp7a_
        complexed with gol
      7. 2958982Domain d3kjjg_: 3kjj G: [344875]
        Other proteins in same PDB: d3kjja2, d3kjjb2, d3kjjc2, d3kjjd2, d3kjje2, d3kjjf2, d3kjjh2, d3kjjj2, d3kjjk2
        automated match to d5hp7a_
        complexed with gol
      8. 2958983Domain d3kjjh1: 3kjj H:1-115 [344876]
        Other proteins in same PDB: d3kjja2, d3kjjb2, d3kjjc2, d3kjjd2, d3kjje2, d3kjjf2, d3kjjh2, d3kjjj2, d3kjjk2
        automated match to d5hp7a_
        complexed with gol
      9. 2958984Domain d3kjji_: 3kjj I: [344878]
        Other proteins in same PDB: d3kjja2, d3kjjb2, d3kjjc2, d3kjjd2, d3kjje2, d3kjjf2, d3kjjh2, d3kjjj2, d3kjjk2
        automated match to d5hp7a_
        complexed with gol
      10. 2958985Domain d3kjjj1: 3kjj J:1-117 [344879]
        Other proteins in same PDB: d3kjja2, d3kjjb2, d3kjjc2, d3kjjd2, d3kjje2, d3kjjf2, d3kjjh2, d3kjjj2, d3kjjk2
        automated match to d5hp7a_
        complexed with gol
      11. 2958986Domain d3kjjk1: 3kjj K:1-117 [344881]
        Other proteins in same PDB: d3kjja2, d3kjjb2, d3kjjc2, d3kjjd2, d3kjje2, d3kjjf2, d3kjjh2, d3kjjj2, d3kjjk2
        automated match to d5hp7a_
        complexed with gol
      12. 2958987Domain d3kjjl_: 3kjj L: [344883]
        Other proteins in same PDB: d3kjja2, d3kjjb2, d3kjjc2, d3kjjd2, d3kjje2, d3kjjf2, d3kjjh2, d3kjjj2, d3kjjk2
        automated match to d5hp7a_
        complexed with gol
    2. Domains for 3kjk:
      1. 2958988Domain d3kjka_: 3kjk A: [344884]
        automated match to d5hp7a_
      2. 2958989Domain d3kjkb_: 3kjk B: [344885]
        automated match to d5hp7a_
      3. 2958990Domain d3kjkc_: 3kjk C: [344886]
        automated match to d5hp7a_
      4. 2958991Domain d3kjkd_: 3kjk D: [344887]
        automated match to d5hp7a_
      5. 2958992Domain d3kjke_: 3kjk E: [344888]
        automated match to d5hp7a_
      6. 2958993Domain d3kjkf_: 3kjk F: [344889]
        automated match to d5hp7a_
      7. 2958994Domain d3kjkg_: 3kjk G: [344890]
        automated match to d5hp7a_
      8. 2958995Domain d3kjkh_: 3kjk H: [344891]
        automated match to d5hp7a_
      9. 2958996Domain d3kjki_: 3kjk I: [344892]
        automated match to d5hp7a_
      10. 2958997Domain d3kjkj_: 3kjk J: [344893]
        automated match to d5hp7a_
      11. 2958998Domain d3kjkk_: 3kjk K: [344894]
        automated match to d5hp7a_
      12. 2958999Domain d3kjkl_: 3kjk L: [344895]
        automated match to d5hp7a_
  12. 2959000Pseudomonas aeruginosa [TaxId:287] [399081] (1 PDB entry)
  13. 2959007Pseudomonas sp [TaxId:306] [361913] (1 PDB entry)
  14. 2959017Pseudomonas syringae [TaxId:323] [196440] (1 PDB entry)
  15. 2959021Psychrobacter sp. [TaxId:2058322] [378257] (1 PDB entry)
  16. 2959025Rhodococcus erythropolis [TaxId:1833] [419963] (4 PDB entries)
    1. Domain for 5hwe:
    2. Domains for 5hxu:
      1. 2959027Domain d5hxua_: 5hxu A: [414865]
        automated match to d4bvsa_
        complexed with cl, mha, na, so4
      2. 2959028Domain d5hxub_: 5hxu B: [414866]
        automated match to d4bvsa_
        complexed with cl, mha, na, so4
    3. Domains for 5hxz:
      1. 2959030Domain d5hxza_: 5hxz A: [414867]
        automated match to d4bvsa_
        complexed with cl, mha, na
      2. 2959031Domain d5hxzb_: 5hxz B: [414868]
        automated match to d4bvsa_
        complexed with cl, mha, na
      3. 2959032Domain d5hxzc_: 5hxz C: [414869]
        automated match to d4bvsa_
        complexed with cl, mha, na
      4. 2959033Domain d5hxzd_: 5hxz D: [414870]
        automated match to d4bvsa_
        complexed with cl, mha, na
    4. Domain for 5hy1:
  17. 2959034Rhodopseudomonas palustris [TaxId:1076] [189252] (1 PDB entry)
  18. 2959047Salmonella typhimurium [TaxId:602] [419847] (1 PDB entry)
  19. 2959051Staphylococcus aureus [TaxId:158878] [358090] (1 PDB entry)
  20. 2959058Streptococcus mutans [TaxId:210007] [189584] (1 PDB entry)
  21. 2959068Thale cress (Arabidopsis thaliana) [TaxId:3702] [323904] (2 PDB entries)
    1. Domain for 5hp7:
    2. Domains for 5hp8:
      1. 2959070Domain d5hp8a_: 5hp8 A: [323905]
        automated match to d3l7qa_
        complexed with pyr
      2. 2959071Domain d5hp8b_: 5hp8 B: [323927]
        automated match to d3l7qa_
        complexed with pyr
      3. 2959072Domain d5hp8c_: 5hp8 C: [323920]
        automated match to d3l7qa_
        complexed with pyr
  22. 2959073uncultured organism [TaxId:155900] [189680] (1 PDB entry)
  23. 2959080Vibrio vulnificus [TaxId:216895] [226289] (1 PDB entry)
  24. 2959084Yersinia pestis [TaxId:632] [332774] (1 PDB entry)

More info for Protein automated matches from d.79.1.0: automated matches

Timeline for Protein automated matches from d.79.1.0: automated matches: