Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2097883Fold c.8: The "swivelling" beta/beta/alpha domain [52008] (10 superfamilies)
    3 layers: b/b/a; the central sheet is parallel, and the other one is antiparallel; there are some variations in topology
    this domain is thought to be mobile in most multi-domain proteins known to contain it
  4. 2097920Superfamily c.8.2: LeuD/IlvD-like [52016] (4 families) (S)
    contains mixed beta-sheet barrel, closed n=7, S=10
  5. 2097962Family c.8.2.0: automated matches [191540] (1 protein)
    not a true family
  6. 2097963Protein automated matches [190925] (2 species)
    not a true protein

Species:

  1. 2097964Methanocaldococcus jannaschii [TaxId:243232] [188422] (2 PDB entries)
    1. Domain for 2pkp:
    2. Domains for 3vba:
      1. 2097965Domain d3vbaa1: 3vba A:1-168 [201213]
        Other proteins in same PDB: d3vbaa2, d3vbab2
        automated match to d3vbaf_
      2. 2097966Domain d3vbab1: 3vba B:1-168 [201214]
        Other proteins in same PDB: d3vbaa2, d3vbab2
        automated match to d3vbaf_
      3. 2097967Domain d3vbac_: 3vba C: [201215]
        Other proteins in same PDB: d3vbaa2, d3vbab2
        automated match to d3vbaf_
      4. 2097968Domain d3vbad_: 3vba D: [201216]
        Other proteins in same PDB: d3vbaa2, d3vbab2
        automated match to d3vbaf_
      5. 2097969Domain d3vbae_: 3vba E: [201217]
        Other proteins in same PDB: d3vbaa2, d3vbab2
        automated match to d3vbaf_
      6. 2097970Domain d3vbaf_: 3vba F: [193376]
        Other proteins in same PDB: d3vbaa2, d3vbab2
        automated match to d2pkpa_
  2. 2097972Rabbit (Oryctolagus cuniculus) [TaxId:9986] [233582] (3 PDB entries)
    1. Domains for 2ipy:
      1. 2097973Domain d2ipya2: 2ipy A:631-889 [304075]
        Other proteins in same PDB: d2ipya1, d2ipyb1
        automated match to d2b3ya1
        protein/RNA complex
      2. 2097974Domain d2ipyb2: 2ipy B:631-889 [304077]
        Other proteins in same PDB: d2ipya1, d2ipyb1
        automated match to d2b3ya1
        protein/RNA complex
    2. Domain for 3sn2:
    3. Domains for 3snp:
      1. 2097975Domain d3snpa2: 3snp A:632-889 [233585]
        Other proteins in same PDB: d3snpa1, d3snpb1
        automated match to d2b3xa1
        protein/RNA complex
      2. 2097976Domain d3snpb2: 3snp B:632-889 [233583]
        Other proteins in same PDB: d3snpa1, d3snpb1
        automated match to d2b3xa1
        protein/RNA complex

More info for Protein automated matches from c.8.2.0: automated matches

Timeline for Protein automated matches from c.8.2.0: automated matches: