SCOPe 2.05: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.05
Class b: All beta proteins [48724] (176 folds)

Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
one turn of helix is made by two pairs of antiparallel strands linked with short turns
has appearance of a sandwich of distinct architecture and jelly-roll topology

Superfamily b.82.1: RmlC-like cupins [51182] (25 families)

Family b.82.1.23: Gentisate 1,2-dioxygenase-like [159299] (2 proteins)
Share a common two-domain fold with the 7S protein; there is a metal-binding site in the N-terminal domain similar to the metal-binding site of germin; homotetramer

Protein automated matches [190924] (1 species)
not a true protein

Species:

Pseudaminobacter salicylatoxidans [TaxId:93369] [188421] (10 PDB entries)
1. Domains for 2phd:
  1. Domain d2phdb_: 2phd B: [149469]
    Other proteins in same PDB: d2phda1
    automated match to d2phda1
    complexed with act, cl, fe
  2. Domain d2phdc_: 2phd C: [149470]
    Other proteins in same PDB: d2phda1
    automated match to d2phda1
    complexed with act, cl, fe
  3. Domain d2phdd_: 2phd D: [149471]
    Other proteins in same PDB: d2phda1
    automated match to d2phda1
    complexed with act, cl, fe
2. Domain for 3njz:
  - Domain d3njza_: 3njz A: [213994]
    automated match to d3nl1a_
    complexed with fe2, gol, sal
3. Domain for 3nkt:
  - Domain d3nkta_: 3nkt A: [213995]
    automated match to d3nl1a_
    complexed with 1hn, fe2, gol
4. Domain for 3nl1:
  - Domain d3nl1a_: 3nl1 A: [196332]
    automated match to d2phdb_
    complexed with fe2, gol, gtq
5. Domain for 3nst:
  - Domain d3nsta_: 3nst A: [214042]
    automated match to d3nw4a_
    complexed with fe2, gol; mutant
6. Domain for 3nvc:
  - Domain d3nvca_: 3nvc A: [214059]
    automated match to d3nw4a_
    complexed with fe2, gol, sal; mutant
7. Domain for 3nw4:
  - Domain d3nw4a_: 3nw4 A: [196330]
    automated match to d2phdb_
    complexed with fe2, gol, gtq; mutant
8. Domain for 4fag:
  - Domain d4faga_: 4fag A: [221098]
    automated match to d4fbfa_
    complexed with fe, gol, gtq; mutant
9. Domain for 4fah:
  - Domain d4faha_: 4fah A: [194642]
    automated match to d2phdb_
    complexed with fe; mutant
10. Domain for 4fbf:
  - Domain d4fbfa_: 4fbf A: [194641]
    automated match to d2phdb_
    complexed with fe; mutant

More info for Protein automated matches from b.82.1.23: Gentisate 1,2-dioxygenase-like

Timeline for Protein automated matches from b.82.1.23: Gentisate 1,2-dioxygenase-like:

Protein automated matches from b.82.1.23: Gentisate 1,2-dioxygenase-like first appeared in SCOPe 2.01
Protein automated matches from b.82.1.23: Gentisate 1,2-dioxygenase-like appears in SCOPe 2.04
Protein automated matches from b.82.1.23: Gentisate 1,2-dioxygenase-like appears in SCOPe 2.06
Protein automated matches from b.82.1.23: Gentisate 1,2-dioxygenase-like appears in the current release, SCOPe 2.08