Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1510239Class b: All beta proteins [48724] (176 folds)
  3. 1561825Fold b.96: Nicotinic receptor ligand binding domain-like [63711] (1 superfamily)
    sandwich; 8 strands in 2 sheets; greek-key: partial topological similarity to immunoglobulin-like folds
  4. 1561826Superfamily b.96.1: Nicotinic receptor ligand binding domain-like [63712] (2 families) (S)
  5. 1561827Family b.96.1.1: Nicotinic receptor ligand binding domain-like [63713] (2 proteins)
    automatically mapped to Pfam PF02931
  6. Protein automated matches [190922] (2 species)
    not a true protein

Species:

  1. Great pond snail (Lymnaea stagnalis) [TaxId:6523] [190008] (11 PDB entries)
    1. Domains for 2zju:
      1. 1562000Domain d2zjua_: 2zju A: [171252]
        automated match to d1uw6a_
        complexed with im4
      2. 1562001Domain d2zjub_: 2zju B: [171253]
        automated match to d1uw6a_
        complexed with im4
      3. 1562002Domain d2zjuc_: 2zju C: [171254]
        automated match to d1uw6a_
        complexed with im4
      4. 1562003Domain d2zjud_: 2zju D: [171255]
        automated match to d1uw6a_
        complexed with im4
      5. 1562004Domain d2zjue_: 2zju E: [171256]
        automated match to d1uw6a_
        complexed with im4
    2. Domains for 2zjv:
      1. 1562025Domain d2zjva_: 2zjv A: [171257]
        automated match to d1uw6a_
        complexed with ct4
      2. 1562026Domain d2zjvb_: 2zjv B: [171258]
        automated match to d1uw6a_
        complexed with ct4
      3. 1562027Domain d2zjvc_: 2zjv C: [171259]
        automated match to d1uw6a_
        complexed with ct4
      4. 1562028Domain d2zjvd_: 2zjv D: [171260]
        automated match to d1uw6a_
        complexed with ct4
      5. 1562029Domain d2zjve_: 2zjv E: [171261]
        automated match to d1uw6a_
        complexed with ct4
    3. Domains for 3u8j:
      1. 1561967Domain d3u8ja_: 3u8j A: [186112]
        automated match to d1uw6a_
        complexed with 09o, nag, so4
      2. 1561968Domain d3u8jb_: 3u8j B: [186113]
        automated match to d1uw6a_
        complexed with 09o, nag, so4
      3. 1561969Domain d3u8jc_: 3u8j C: [186114]
        automated match to d1uw6a_
        complexed with 09o, nag, so4
      4. 1561970Domain d3u8jd_: 3u8j D: [186115]
        automated match to d1uw6a_
        complexed with 09o, nag, so4
      5. 1561971Domain d3u8je_: 3u8j E: [186116]
        automated match to d1uw6a_
        complexed with 09o, nag, so4
      6. 1561972Domain d3u8jf_: 3u8j F: [186117]
        automated match to d1uw6a_
        complexed with 09o, nag, so4
      7. 1561973Domain d3u8jg_: 3u8j G: [186118]
        automated match to d1uw6a_
        complexed with 09o, nag, so4
      8. 1561974Domain d3u8jh_: 3u8j H: [186119]
        automated match to d1uw6a_
        complexed with 09o, nag, so4
      9. 1561975Domain d3u8ji_: 3u8j I: [186120]
        automated match to d1uw6a_
        complexed with 09o, nag, so4
      10. 1561976Domain d3u8jj_: 3u8j J: [186121]
        automated match to d1uw6a_
        complexed with 09o, nag, so4
    4. Domains for 3u8k:
      1. 1561980Domain d3u8ka_: 3u8k A: [186122]
        automated match to d1uw6a_
        complexed with 09p, nag, so4
      2. 1561981Domain d3u8kb_: 3u8k B: [186123]
        automated match to d1uw6a_
        complexed with 09p, nag, so4
      3. 1561982Domain d3u8kc_: 3u8k C: [186124]
        automated match to d1uw6a_
        complexed with 09p, nag, so4
      4. 1561983Domain d3u8kd_: 3u8k D: [186125]
        automated match to d1uw6a_
        complexed with 09p, nag, so4
      5. 1561984Domain d3u8ke_: 3u8k E: [186126]
        automated match to d1uw6a_
        complexed with 09p, nag, so4
      6. 1561985Domain d3u8kf_: 3u8k F: [186127]
        automated match to d1uw6a_
        complexed with 09p, nag, so4
      7. 1561986Domain d3u8kg_: 3u8k G: [186128]
        automated match to d1uw6a_
        complexed with 09p, nag, so4
      8. 1561987Domain d3u8kh_: 3u8k H: [186129]
        automated match to d1uw6a_
        complexed with 09p, nag, so4
      9. 1561988Domain d3u8ki_: 3u8k I: [186130]
        automated match to d1uw6a_
        complexed with 09p, nag, so4
      10. 1561989Domain d3u8kj_: 3u8k J: [186131]
        automated match to d1uw6a_
        complexed with 09p, nag, so4
      11. 1561990Domain d3u8kk_: 3u8k K: [186132]
        automated match to d1uw6a_
        complexed with 09p, nag, so4
      12. 1561991Domain d3u8kl_: 3u8k L: [186133]
        automated match to d1uw6a_
        complexed with 09p, nag, so4
      13. 1561992Domain d3u8km_: 3u8k M: [186134]
        automated match to d1uw6a_
        complexed with 09p, nag, so4
      14. 1561993Domain d3u8kn_: 3u8k N: [186135]
        automated match to d1uw6a_
        complexed with 09p, nag, so4
      15. 1561994Domain d3u8ko_: 3u8k O: [186136]
        automated match to d1uw6a_
        complexed with 09p, nag, so4
      16. 1561995Domain d3u8kp_: 3u8k P: [186137]
        automated match to d1uw6a_
        complexed with 09p, nag, so4
      17. 1561996Domain d3u8kq_: 3u8k Q: [186138]
        automated match to d1uw6a_
        complexed with 09p, nag, so4
      18. 1561997Domain d3u8kr_: 3u8k R: [186139]
        automated match to d1uw6a_
        complexed with 09p, nag, so4
      19. 1561998Domain d3u8ks_: 3u8k S: [186140]
        automated match to d1uw6a_
        complexed with 09p, nag, so4
      20. 1561999Domain d3u8kt_: 3u8k T: [186141]
        automated match to d1uw6a_
        complexed with 09p, nag, so4
    5. Domains for 3u8l:
      1. 1561927Domain d3u8la_: 3u8l A: [186142]
        automated match to d1uw6a_
        complexed with 09q, so4
      2. 1561928Domain d3u8lb_: 3u8l B: [186143]
        automated match to d1uw6a_
        complexed with 09q, so4
      3. 1561929Domain d3u8lc_: 3u8l C: [186144]
        automated match to d1uw6a_
        complexed with 09q, so4
      4. 1561930Domain d3u8ld_: 3u8l D: [186145]
        automated match to d1uw6a_
        complexed with 09q, so4
      5. 1561931Domain d3u8le_: 3u8l E: [186146]
        automated match to d1uw6a_
        complexed with 09q, so4
      6. 1561932Domain d3u8lf_: 3u8l F: [186147]
        automated match to d1uw6a_
        complexed with 09q, so4
      7. 1561933Domain d3u8lg_: 3u8l G: [186148]
        automated match to d1uw6a_
        complexed with 09q, so4
      8. 1561934Domain d3u8lh_: 3u8l H: [186149]
        automated match to d1uw6a_
        complexed with 09q, so4
      9. 1561935Domain d3u8li_: 3u8l I: [186150]
        automated match to d1uw6a_
        complexed with 09q, so4
      10. 1561936Domain d3u8lj_: 3u8l J: [186151]
        automated match to d1uw6a_
        complexed with 09q, so4
    6. Domains for 3u8m:
      1. 1562005Domain d3u8ma_: 3u8m A: [186152]
        automated match to d1uw6a_
        complexed with 09r, so4
      2. 1562006Domain d3u8mb_: 3u8m B: [186153]
        automated match to d1uw6a_
        complexed with 09r, so4
      3. 1562007Domain d3u8mc_: 3u8m C: [186154]
        automated match to d1uw6a_
        complexed with 09r, so4
      4. 1562008Domain d3u8md_: 3u8m D: [186155]
        automated match to d1uw6a_
        complexed with 09r, so4
      5. 1562009Domain d3u8me_: 3u8m E: [186156]
        automated match to d1uw6a_
        complexed with 09r, so4
      6. 1562010Domain d3u8mf_: 3u8m F: [186157]
        automated match to d1uw6a_
        complexed with 09r, so4
      7. 1562011Domain d3u8mg_: 3u8m G: [186158]
        automated match to d1uw6a_
        complexed with 09r, so4
      8. 1562012Domain d3u8mh_: 3u8m H: [186159]
        automated match to d1uw6a_
        complexed with 09r, so4
      9. 1562013Domain d3u8mi_: 3u8m I: [186160]
        automated match to d1uw6a_
        complexed with 09r, so4
      10. 1562014Domain d3u8mj_: 3u8m J: [186161]
        automated match to d1uw6a_
        complexed with 09r, so4
      11. 1562015Domain d3u8mk_: 3u8m K: [186162]
        automated match to d1uw6a_
        complexed with 09r, so4
      12. 1562016Domain d3u8ml_: 3u8m L: [186163]
        automated match to d1uw6a_
        complexed with 09r, so4
      13. 1562017Domain d3u8mm_: 3u8m M: [186164]
        automated match to d1uw6a_
        complexed with 09r, so4
      14. 1562018Domain d3u8mn_: 3u8m N: [186165]
        automated match to d1uw6a_
        complexed with 09r, so4
      15. 1562019Domain d3u8mo_: 3u8m O: [186166]
        automated match to d1uw6a_
        complexed with 09r, so4
      16. 1562020Domain d3u8mp_: 3u8m P: [186167]
        automated match to d1uw6a_
        complexed with 09r, so4
      17. 1562021Domain d3u8mq_: 3u8m Q: [186168]
        automated match to d1uw6a_
        complexed with 09r, so4
      18. 1562022Domain d3u8mr_: 3u8m R: [186169]
        automated match to d1uw6a_
        complexed with 09r, so4
      19. 1562023Domain d3u8ms_: 3u8m S: [186170]
        automated match to d1uw6a_
        complexed with 09r, so4
      20. 1562024Domain d3u8mt_: 3u8m T: [186171]
        automated match to d1uw6a_
        complexed with 09r, so4
    7. Domains for 3u8n:
      1. 1561937Domain d3u8na_: 3u8n A: [186172]
        automated match to d1uw6a_
        complexed with 09s, nag, so4
      2. 1561938Domain d3u8nb_: 3u8n B: [186173]
        automated match to d1uw6a_
        complexed with 09s, nag, so4
      3. 1561939Domain d3u8nc_: 3u8n C: [186174]
        automated match to d1uw6a_
        complexed with 09s, nag, so4
      4. 1561940Domain d3u8nd_: 3u8n D: [186175]
        automated match to d1uw6a_
        complexed with 09s, nag, so4
      5. 1561941Domain d3u8ne_: 3u8n E: [186176]
        automated match to d1uw6a_
        complexed with 09s, nag, so4
      6. 1561942Domain d3u8nf_: 3u8n F: [186177]
        automated match to d1uw6a_
        complexed with 09s, nag, so4
      7. 1561943Domain d3u8ng_: 3u8n G: [186178]
        automated match to d1uw6a_
        complexed with 09s, nag, so4
      8. 1561944Domain d3u8nh_: 3u8n H: [186179]
        automated match to d1uw6a_
        complexed with 09s, nag, so4
      9. 1561945Domain d3u8ni_: 3u8n I: [186180]
        automated match to d1uw6a_
        complexed with 09s, nag, so4
      10. 1561946Domain d3u8nj_: 3u8n J: [186181]
        automated match to d1uw6a_
        complexed with 09s, nag, so4
      11. 1561947Domain d3u8nk_: 3u8n K: [186182]
        automated match to d1uw6a_
        complexed with 09s, nag, so4
      12. 1561948Domain d3u8nl_: 3u8n L: [186183]
        automated match to d1uw6a_
        complexed with 09s, nag, so4
      13. 1561949Domain d3u8nm_: 3u8n M: [186184]
        automated match to d1uw6a_
        complexed with 09s, nag, so4
      14. 1561950Domain d3u8nn_: 3u8n N: [186185]
        automated match to d1uw6a_
        complexed with 09s, nag, so4
      15. 1561951Domain d3u8no_: 3u8n O: [186186]
        automated match to d1uw6a_
        complexed with 09s, nag, so4
      16. 1561952Domain d3u8np_: 3u8n P: [186187]
        automated match to d1uw6a_
        complexed with 09s, nag, so4
      17. 1561953Domain d3u8nq_: 3u8n Q: [186188]
        automated match to d1uw6a_
        complexed with 09s, nag, so4
      18. 1561954Domain d3u8nr_: 3u8n R: [186189]
        automated match to d1uw6a_
        complexed with 09s, nag, so4
      19. 1561955Domain d3u8ns_: 3u8n S: [186190]
        automated match to d1uw6a_
        complexed with 09s, nag, so4
      20. 1561956Domain d3u8nt_: 3u8n T: [186191]
        automated match to d1uw6a_
        complexed with 09s, nag, so4
    8. Domain for 3wip:
    9. Domains for 3zdg:
      1. 1561923Domain d3zdgd_: 3zdg D: [196626]
        Other proteins in same PDB: d3zdga_, d3zdgb_, d3zdgc_, d3zdgh_, d3zdgi_, d3zdgj_, d3zdgk_, d3zdgl_, d3zdgm_, d3zdgn_, d3zdgo_, d3zdgp_, d3zdgq_, d3zdgr_, d3zdgs_, d3zdgt_
        automated match to d3u8jb_
        complexed with 1pe, nag, peg, so4, xrx
      2. 1561924Domain d3zdge_: 3zdg E: [196627]
        Other proteins in same PDB: d3zdga_, d3zdgb_, d3zdgc_, d3zdgh_, d3zdgi_, d3zdgj_, d3zdgk_, d3zdgl_, d3zdgm_, d3zdgn_, d3zdgo_, d3zdgp_, d3zdgq_, d3zdgr_, d3zdgs_, d3zdgt_
        automated match to d3u8jb_
        complexed with 1pe, nag, peg, so4, xrx
      3. 1561925Domain d3zdgf_: 3zdg F: [196628]
        Other proteins in same PDB: d3zdga_, d3zdgb_, d3zdgc_, d3zdgh_, d3zdgi_, d3zdgj_, d3zdgk_, d3zdgl_, d3zdgm_, d3zdgn_, d3zdgo_, d3zdgp_, d3zdgq_, d3zdgr_, d3zdgs_, d3zdgt_
        automated match to d3u8jb_
        complexed with 1pe, nag, peg, so4, xrx
      4. 1561926Domain d3zdgg_: 3zdg G: [196629]
        Other proteins in same PDB: d3zdga_, d3zdgb_, d3zdgc_, d3zdgh_, d3zdgi_, d3zdgj_, d3zdgk_, d3zdgl_, d3zdgm_, d3zdgn_, d3zdgo_, d3zdgp_, d3zdgq_, d3zdgr_, d3zdgs_, d3zdgt_
        automated match to d3u8jb_
        complexed with 1pe, nag, peg, so4, xrx
    10. Domains for 4alx:
      1. 1561957Domain d4alxa_: 4alx A: [201451]
        automated match to d4alxg_
        complexed with 1pe, izn, mg
      2. 1561958Domain d4alxb_: 4alx B: [201452]
        automated match to d4alxg_
        complexed with 1pe, izn, mg
      3. 1561959Domain d4alxc_: 4alx C: [201453]
        automated match to d4alxg_
        complexed with 1pe, izn, mg
      4. 1561960Domain d4alxd_: 4alx D: [201454]
        automated match to d4alxg_
        complexed with 1pe, izn, mg
      5. 1561961Domain d4alxe_: 4alx E: [201455]
        automated match to d4alxg_
        complexed with 1pe, izn, mg
      6. 1561962Domain d4alxf_: 4alx F: [201456]
        automated match to d4alxg_
        complexed with 1pe, izn, mg
      7. 1561963Domain d4alxg_: 4alx G: [193556]
        automated match to d3u8jb_
        complexed with 1pe, izn, mg
      8. 1561964Domain d4alxh_: 4alx H: [201457]
        automated match to d4alxg_
        complexed with 1pe, izn, mg
      9. 1561965Domain d4alxi_: 4alx I: [201458]
        automated match to d4alxg_
        complexed with 1pe, izn, mg
      10. 1561966Domain d4alxj_: 4alx J: [201459]
        automated match to d4alxg_
        complexed with 1pe, izn, mg
    11. Domains for 4qac:
      1. 1561977Domain d4qaca_: 4qac A: [258336]
        automated match to d4alxa_
        complexed with kk3, nag, po4
      2. 1561978Domain d4qacb_: 4qac B: [258984]
        automated match to d4alxa_
        complexed with kk3, nag, po4
      3. 1561979Domain d4qacd_: 4qac D: [258985]
        automated match to d4alxa_
        complexed with kk3, nag, po4
  2. 1562031Human (Homo sapiens) [TaxId:9606] [189722] (2 PDB entries)
    1. Domains for 3sq6:
      1. 1562032Domain d3sq6a_: 3sq6 A: [185478]
        automated match to d1uw6a_
        complexed with epj, nag
      2. 1562033Domain d3sq6b_: 3sq6 B: [185479]
        automated match to d1uw6a_
        complexed with epj, nag
      3. 1562034Domain d3sq6c_: 3sq6 C: [185480]
        automated match to d1uw6a_
        complexed with epj, nag
      4. 1562035Domain d3sq6d_: 3sq6 D: [185481]
        automated match to d1uw6a_
        complexed with epj, nag
      5. 1562036Domain d3sq6e_: 3sq6 E: [185482]
        automated match to d1uw6a_
        complexed with epj, nag
      6. 1562037Domain d3sq6f_: 3sq6 F: [185483]
        automated match to d1uw6a_
        complexed with epj, nag
      7. 1562038Domain d3sq6g_: 3sq6 G: [185484]
        automated match to d1uw6a_
        complexed with epj, nag
      8. 1562039Domain d3sq6h_: 3sq6 H: [185485]
        automated match to d1uw6a_
        complexed with epj, nag
      9. 1562040Domain d3sq6i_: 3sq6 I: [185486]
        automated match to d1uw6a_
        complexed with epj, nag
      10. 1562041Domain d3sq6j_: 3sq6 J: [185487]
        automated match to d1uw6a_
        complexed with epj, nag
    2. Domains for 3sq9:
      1. 1562042Domain d3sq9a_: 3sq9 A: [249554]
        automated match to d3sq6a_
        complexed with nag
      2. 1562043Domain d3sq9b_: 3sq9 B: [249555]
        automated match to d3sq6a_
        complexed with nag
      3. 1562044Domain d3sq9c_: 3sq9 C: [249556]
        automated match to d3sq6a_
        complexed with nag
      4. 1562045Domain d3sq9d_: 3sq9 D: [249557]
        automated match to d3sq6a_
        complexed with nag
      5. 1562046Domain d3sq9e_: 3sq9 E: [249558]
        automated match to d3sq6a_
        complexed with nag
      6. 1562047Domain d3sq9f_: 3sq9 F: [249559]
        automated match to d3sq6a_
        complexed with nag
      7. 1562048Domain d3sq9g_: 3sq9 G: [249560]
        automated match to d3sq6a_
        complexed with nag
      8. 1562049Domain d3sq9h_: 3sq9 H: [249561]
        automated match to d3sq6a_
        complexed with nag
      9. 1562050Domain d3sq9i_: 3sq9 I: [249562]
        automated match to d3sq6a_
        complexed with nag
      10. 1562051Domain d3sq9j_: 3sq9 J: [249563]
        automated match to d3sq6a_
        complexed with nag

More info for Protein automated matches from b.96.1.1: Nicotinic receptor ligand binding domain-like

Timeline for Protein automated matches from b.96.1.1: Nicotinic receptor ligand binding domain-like: