Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2075417Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2076263Superfamily b.121.5: ssDNA viruses [88645] (3 families) (S)
  5. 2076282Family b.121.5.2: Parvoviridae-like VP [88646] (3 protein domains)
    automatically mapped to Pfam PF00740
  6. 2076308Protein automated matches [190920] (7 species)
    not a true protein

Species:

  1. 2076309Adeno-associated virus - 1 [TaxId:85106] [255978] (2 PDB entries)
    1. Domains for 3ng9:
      1. 2076310Domain d3ng9a_: 3ng9 A: [247905]
        automated match to d1lp3a_
        complexed with ade, cyt
      2. 2076311Domain d3ng9b_: 3ng9 B: [247906]
        automated match to d1lp3a_
        complexed with ade, cyt
      3. 2076312Domain d3ng9c_: 3ng9 C: [247907]
        automated match to d1lp3a_
        complexed with ade, cyt
      4. 2076313Domain d3ng9d_: 3ng9 D: [247908]
        automated match to d1lp3a_
        complexed with ade, cyt
      5. 2076314Domain d3ng9e_: 3ng9 E: [247909]
        automated match to d1lp3a_
        complexed with ade, cyt
      6. 2076315Domain d3ng9f_: 3ng9 F: [247910]
        automated match to d1lp3a_
        complexed with ade, cyt
      7. 2076316Domain d3ng9g_: 3ng9 G: [247911]
        automated match to d1lp3a_
        complexed with ade, cyt
      8. 2076317Domain d3ng9h_: 3ng9 H: [247912]
        automated match to d1lp3a_
        complexed with ade, cyt
      9. 2076318Domain d3ng9i_: 3ng9 I: [247913]
        automated match to d1lp3a_
        complexed with ade, cyt
      10. 2076319Domain d3ng9j_: 3ng9 J: [247914]
        automated match to d1lp3a_
        complexed with ade, cyt
    2. Domain for 5egc:
  2. 2076320Adeno-associated virus - 6 [TaxId:68558] [254925] (5 PDB entries)
    1. Domains for 1vu0:
      1. 2076322Domain d1vu0a_: 1vu0 a: [240809]
      2. 2076323Domain d1vu0b_: 1vu0 b: [240810]
      3. 2076324Domain d1vu0c_: 1vu0 c: [240811]
      4. 2076325Domain d1vu0d_: 1vu0 d: [240812]
      5. 2076326Domain d1vu0e_: 1vu0 e: [240813]
      6. 2076327Domain d1vu0f_: 1vu0 f: [240814]
      7. 2076328Domain d1vu0g_: 1vu0 g: [240815]
      8. 2076329Domain d1vu0h_: 1vu0 h: [240816]
      9. 2076330Domain d1vu0i_: 1vu0 i: [240817]
      10. 2076331Domain d1vu0j_: 1vu0 j: [240818]
      11. 2076332Domain d1vu0k_: 1vu0 k: [240819]
      12. 2076333Domain d1vu0l_: 1vu0 l: [240820]
      13. 2076334Domain d1vu0m_: 1vu0 m: [240821]
      14. 2076335Domain d1vu0n_: 1vu0 n: [240822]
      15. 2076336Domain d1vu0u_: 1vu0 U: [240823]
      16. 2076337Domain d1vu0v_: 1vu0 V: [240824]
      17. 2076338Domain d1vu0w_: 1vu0 W: [240825]
      18. 2076339Domain d1vu0x_: 1vu0 X: [240826]
      19. 2076340Domain d1vu0y_: 1vu0 Y: [240827]
      20. 2076341Domain d1vu0z_: 1vu0 Z: [240828]
    2. Domains for 1vu1:
      1. 2076342Domain d1vu10_: 1vu1 0: [240829]
      2. 2076343Domain d1vu11_: 1vu1 1: [240830]
      3. 2076344Domain d1vu12_: 1vu1 2: [240831]
      4. 2076345Domain d1vu13_: 1vu1 3: [240832]
      5. 2076346Domain d1vu14_: 1vu1 4: [240833]
      6. 2076347Domain d1vu15_: 1vu1 5: [240834]
      7. 2076348Domain d1vu16_: 1vu1 6: [240835]
      8. 2076349Domain d1vu17_: 1vu1 7: [240836]
      9. 2076350Domain d1vu1o_: 1vu1 o: [240837]
      10. 2076351Domain d1vu1p_: 1vu1 p: [240838]
      11. 2076352Domain d1vu1q_: 1vu1 q: [240839]
      12. 2076353Domain d1vu1r_: 1vu1 r: [240840]
      13. 2076354Domain d1vu1s_: 1vu1 s: [240841]
      14. 2076355Domain d1vu1t_: 1vu1 t: [240842]
      15. 2076356Domain d1vu1u_: 1vu1 u: [240843]
      16. 2076357Domain d1vu1v_: 1vu1 v: [240844]
      17. 2076358Domain d1vu1w_: 1vu1 w: [240845]
      18. 2076359Domain d1vu1x_: 1vu1 x: [240846]
      19. 2076360Domain d1vu1y_: 1vu1 y: [240847]
      20. 2076361Domain d1vu1z_: 1vu1 z: [240848]
    3. Domain for 3oah:
    4. Domains for 3shm:
      1. 2076382Domain d3shma_: 3shm A: [249454]
        automated match to d1lp3a_
      2. 2076383Domain d3shmb_: 3shm B: [249455]
        automated match to d1lp3a_
      3. 2076384Domain d3shmc_: 3shm C: [249456]
        automated match to d1lp3a_
      4. 2076385Domain d3shmd_: 3shm D: [249457]
        automated match to d1lp3a_
      5. 2076386Domain d3shme_: 3shm E: [249458]
        automated match to d1lp3a_
      6. 2076387Domain d3shmf_: 3shm F: [249459]
        automated match to d1lp3a_
      7. 2076388Domain d3shmg_: 3shm G: [249460]
        automated match to d1lp3a_
      8. 2076389Domain d3shmh_: 3shm H: [249461]
        automated match to d1lp3a_
      9. 2076390Domain d3shmi_: 3shm I: [249462]
        automated match to d1lp3a_
      10. 2076391Domain d3shmj_: 3shm J: [249463]
        automated match to d1lp3a_
      11. 2076392Domain d3shmk_: 3shm K: [249464]
        automated match to d1lp3a_
      12. 2076393Domain d3shml_: 3shm L: [249465]
        automated match to d1lp3a_
      13. 2076394Domain d3shmm_: 3shm M: [249466]
        automated match to d1lp3a_
      14. 2076395Domain d3shmn_: 3shm N: [249467]
        automated match to d1lp3a_
      15. 2076396Domain d3shmo_: 3shm O: [249468]
        automated match to d1lp3a_
      16. 2076397Domain d3shmp_: 3shm P: [249469]
        automated match to d1lp3a_
      17. 2076398Domain d3shmq_: 3shm Q: [249470]
        automated match to d1lp3a_
      18. 2076399Domain d3shmr_: 3shm R: [249471]
        automated match to d1lp3a_
      19. 2076400Domain d3shms_: 3shm S: [249472]
        automated match to d1lp3a_
      20. 2076401Domain d3shmt_: 3shm T: [249473]
        automated match to d1lp3a_
    5. Domains for 3tsx:
      1. 2076362Domain d3tsxa_: 3tsx A: [249999]
      2. 2076363Domain d3tsxb_: 3tsx B: [250000]
      3. 2076364Domain d3tsxc_: 3tsx C: [250001]
      4. 2076365Domain d3tsxd_: 3tsx D: [250002]
      5. 2076366Domain d3tsxe_: 3tsx E: [250003]
      6. 2076367Domain d3tsxf_: 3tsx F: [250004]
      7. 2076368Domain d3tsxg_: 3tsx G: [250005]
      8. 2076369Domain d3tsxh_: 3tsx H: [250006]
      9. 2076370Domain d3tsxi_: 3tsx I: [250007]
      10. 2076371Domain d3tsxj_: 3tsx J: [250008]
      11. 2076372Domain d3tsxk_: 3tsx K: [250009]
      12. 2076373Domain d3tsxl_: 3tsx L: [250010]
      13. 2076374Domain d3tsxm_: 3tsx M: [250011]
      14. 2076375Domain d3tsxn_: 3tsx N: [250012]
      15. 2076376Domain d3tsxo_: 3tsx O: [250013]
      16. 2076377Domain d3tsxp_: 3tsx P: [250014]
      17. 2076378Domain d3tsxq_: 3tsx Q: [250015]
      18. 2076379Domain d3tsxr_: 3tsx R: [250016]
      19. 2076380Domain d3tsxs_: 3tsx S: [250017]
      20. 2076381Domain d3tsxt_: 3tsx T: [250018]
  3. 2076402Adeno-associated virus - 8 [TaxId:202813] [188409] (5 PDB entries)
    1. Domain for 2qa0:
    2. Domain for 3ra2:
    3. Domain for 3ra4:
    4. Domain for 3ra8:
    5. Domain for 3ra9:
  4. 2076408Adeno-associated virus 3b [TaxId:68742] [255908] (2 PDB entries)
    1. Domains for 3kic:
      1. 2076409Domain d3kica_: 3kic A: [247164]
        automated match to d1lp3a_
        complexed with d5m
      2. 2076410Domain d3kicb_: 3kic B: [247165]
        automated match to d1lp3a_
        complexed with d5m
      3. 2076411Domain d3kicc_: 3kic C: [247166]
        automated match to d1lp3a_
        complexed with d5m
      4. 2076412Domain d3kicd_: 3kic D: [247167]
        automated match to d1lp3a_
        complexed with d5m
      5. 2076413Domain d3kice_: 3kic E: [247168]
        automated match to d1lp3a_
        complexed with d5m
      6. 2076414Domain d3kicf_: 3kic F: [247169]
        automated match to d1lp3a_
        complexed with d5m
      7. 2076415Domain d3kicg_: 3kic G: [247170]
        automated match to d1lp3a_
        complexed with d5m
      8. 2076416Domain d3kich_: 3kic H: [247171]
        automated match to d1lp3a_
        complexed with d5m
      9. 2076417Domain d3kici_: 3kic I: [247172]
        automated match to d1lp3a_
        complexed with d5m
      10. 2076418Domain d3kicj_: 3kic J: [247173]
        automated match to d1lp3a_
        complexed with d5m
      11. 2076419Domain d3kick_: 3kic K: [247174]
        automated match to d1lp3a_
        complexed with d5m
      12. 2076420Domain d3kicl_: 3kic L: [247175]
        automated match to d1lp3a_
        complexed with d5m
      13. 2076421Domain d3kicm_: 3kic M: [247176]
        automated match to d1lp3a_
        complexed with d5m
      14. 2076422Domain d3kicn_: 3kic N: [247177]
        automated match to d1lp3a_
        complexed with d5m
      15. 2076423Domain d3kico_: 3kic O: [247178]
        automated match to d1lp3a_
        complexed with d5m
      16. 2076424Domain d3kicp_: 3kic P: [247179]
        automated match to d1lp3a_
        complexed with d5m
      17. 2076425Domain d3kicq_: 3kic Q: [247180]
        automated match to d1lp3a_
        complexed with d5m
      18. 2076426Domain d3kicr_: 3kic R: [247181]
        automated match to d1lp3a_
        complexed with d5m
      19. 2076427Domain d3kics_: 3kic S: [247182]
        automated match to d1lp3a_
        complexed with d5m
      20. 2076428Domain d3kict_: 3kic T: [247183]
        automated match to d1lp3a_
        complexed with d5m
    2. Domains for 3kie:
      1. 2076429Domain d3kiea_: 3kie A: [247184]
        automated match to d1lp3a_
        complexed with d5m
      2. 2076430Domain d3kieb_: 3kie B: [247185]
        automated match to d1lp3a_
        complexed with d5m
      3. 2076431Domain d3kiec_: 3kie C: [247186]
        automated match to d1lp3a_
        complexed with d5m
      4. 2076432Domain d3kied_: 3kie D: [247187]
        automated match to d1lp3a_
        complexed with d5m
      5. 2076433Domain d3kiee_: 3kie E: [247188]
        automated match to d1lp3a_
        complexed with d5m
      6. 2076434Domain d3kief_: 3kie F: [247189]
        automated match to d1lp3a_
        complexed with d5m
      7. 2076435Domain d3kieg_: 3kie G: [247190]
        automated match to d1lp3a_
        complexed with d5m
      8. 2076436Domain d3kieh_: 3kie H: [247191]
        automated match to d1lp3a_
        complexed with d5m
      9. 2076437Domain d3kiei_: 3kie I: [247192]
        automated match to d1lp3a_
        complexed with d5m
      10. 2076438Domain d3kiej_: 3kie J: [247193]
        automated match to d1lp3a_
        complexed with d5m
      11. 2076439Domain d3kiek_: 3kie K: [247194]
        automated match to d1lp3a_
        complexed with d5m
      12. 2076440Domain d3kiel_: 3kie L: [247195]
        automated match to d1lp3a_
        complexed with d5m
      13. 2076441Domain d3kiem_: 3kie M: [247196]
        automated match to d1lp3a_
        complexed with d5m
      14. 2076442Domain d3kien_: 3kie N: [247197]
        automated match to d1lp3a_
        complexed with d5m
      15. 2076443Domain d3kieo_: 3kie O: [247198]
        automated match to d1lp3a_
        complexed with d5m
      16. 2076444Domain d3kiep_: 3kie P: [247199]
        automated match to d1lp3a_
        complexed with d5m
      17. 2076445Domain d3kieq_: 3kie Q: [247200]
        automated match to d1lp3a_
        complexed with d5m
      18. 2076446Domain d3kier_: 3kie R: [247201]
        automated match to d1lp3a_
        complexed with d5m
      19. 2076447Domain d3kies_: 3kie S: [247202]
        automated match to d1lp3a_
        complexed with d5m
      20. 2076448Domain d3kiet_: 3kie T: [247203]
        automated match to d1lp3a_
        complexed with d5m
  5. 2076449Adeno-associated virus 9 [TaxId:235455] [193792] (1 PDB entry)
  6. 2076451H-1 parvovirus [TaxId:10799] [256260] (1 PDB entry)
  7. 2291321Adeno-associated virus [TaxId:272636] [334622] (1 PDB entry)

More info for Protein automated matches from b.121.5.2: Parvoviridae-like VP

Timeline for Protein automated matches from b.121.5.2: Parvoviridae-like VP: