Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2413227Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2425148Superfamily c.1.18: PLC-like phosphodiesterases [51695] (4 families) (S)
  5. 2425231Family c.1.18.0: automated matches [191539] (1 protein)
    not a true family
  6. 2425232Protein automated matches [190919] (11 species)
    not a true protein

Species:

  1. 2425233Agrobacterium tumefaciens [TaxId:176299] [196495] (2 PDB entries)
    1. Domains for 3ks5:
      1. 2425238Domain d3ks5a1: 3ks5 A:1-246 [199675]
        Other proteins in same PDB: d3ks5a2, d3ks5b2
        automated match to d3ks5b_
        complexed with act, edo, fe
      2. 2425239Domain d3ks5b1: 3ks5 B:1-247 [196496]
        Other proteins in same PDB: d3ks5a2, d3ks5b2
        automated match to d2pz0b_
        complexed with act, edo, fe
    2. Domains for 3ks6:
      1. 2425234Domain d3ks6a1: 3ks6 A:1-249 [199676]
        Other proteins in same PDB: d3ks6a2, d3ks6b2
        automated match to d3ks5b_
        complexed with act, cl, mg, peg, unl
      2. 2425235Domain d3ks6b1: 3ks6 B:1-248 [199677]
        Other proteins in same PDB: d3ks6a2, d3ks6b2
        automated match to d3ks5b_
        complexed with act, cl, mg, peg, unl
      3. 2425236Domain d3ks6c_: 3ks6 C: [199678]
        Other proteins in same PDB: d3ks6a2, d3ks6b2
        automated match to d3ks5b_
        complexed with act, cl, mg, peg, unl
      4. 2425237Domain d3ks6d_: 3ks6 D: [196497]
        Other proteins in same PDB: d3ks6a2, d3ks6b2
        automated match to d2pz0b_
        complexed with act, cl, mg, peg, unl
  2. 2425240Bacillus subtilis [TaxId:224308] [324756] (3 PDB entries)
    1. Domain for 5t91:
    2. Domain for 5t9b:
    3. Domain for 5t9c:
  3. 2425244Cytophaga hutchinsonii [TaxId:269798] [195100] (1 PDB entry)
  4. 2425246Oleispira antarctica [TaxId:188908] [196362] (1 PDB entry)
  5. 2425251Parabacteroides distasonis [TaxId:435591] [189422] (1 PDB entry)
  6. 2425253Red algae (Galdieria sulphuraria) [TaxId:130081] [193207] (1 PDB entry)
  7. 2425255Shigella flexneri [TaxId:623] [225231] (1 PDB entry)
  8. 2425260Silicibacter pomeroyi [TaxId:89184] [232751] (1 PDB entry)
  9. 2425263Staphylococcus aureus [TaxId:158879] [231089] (2 PDB entries)
    1. Domains for 2oog:
      1. 2425264Domain d2ooga1: 2oog A:44-309 [231090]
        Other proteins in same PDB: d2ooga2, d2oogb2, d2oogc2, d2oogd2, d2ooge2, d2oogf2
        automated match to d3ch0a_
        complexed with gol, so4, zn
      2. 2425265Domain d2oogb1: 2oog B:44-309 [231091]
        Other proteins in same PDB: d2ooga2, d2oogb2, d2oogc2, d2oogd2, d2ooge2, d2oogf2
        automated match to d3ch0a_
        complexed with gol, so4, zn
      3. 2425266Domain d2oogc1: 2oog C:44-309 [231092]
        Other proteins in same PDB: d2ooga2, d2oogb2, d2oogc2, d2oogd2, d2ooge2, d2oogf2
        automated match to d3ch0a_
        complexed with gol, so4, zn
      4. 2425267Domain d2oogd1: 2oog D:44-309 [231093]
        Other proteins in same PDB: d2ooga2, d2oogb2, d2oogc2, d2oogd2, d2ooge2, d2oogf2
        automated match to d3ch0a_
        complexed with gol, so4, zn
      5. 2425268Domain d2ooge1: 2oog E:44-309 [238777]
        Other proteins in same PDB: d2ooga2, d2oogb2, d2oogc2, d2oogd2, d2ooge2, d2oogf2
        automated match to d2ooga_
        complexed with gol, so4, zn
      6. 2425269Domain d2oogf1: 2oog F:44-309 [238778]
        Other proteins in same PDB: d2ooga2, d2oogb2, d2oogc2, d2oogd2, d2ooge2, d2oogf2
        automated match to d2ooga_
        complexed with gol, so4, zn
    2. Domains for 2p76:
      1. 2425270Domain d2p76a1: 2p76 A:44-309 [243448]
        Other proteins in same PDB: d2p76a2, d2p76b2, d2p76c2, d2p76d2, d2p76e2, d2p76f2, d2p76g2, d2p76h2
        automated match to d2ooga_
        complexed with gol, na
      2. 2425271Domain d2p76b1: 2p76 B:44-309 [243449]
        Other proteins in same PDB: d2p76a2, d2p76b2, d2p76c2, d2p76d2, d2p76e2, d2p76f2, d2p76g2, d2p76h2
        automated match to d2ooga_
        complexed with gol, na
      3. 2425272Domain d2p76c1: 2p76 C:44-309 [243450]
        Other proteins in same PDB: d2p76a2, d2p76b2, d2p76c2, d2p76d2, d2p76e2, d2p76f2, d2p76g2, d2p76h2
        automated match to d2ooga_
        complexed with gol, na
      4. 2425273Domain d2p76d1: 2p76 D:44-309 [243451]
        Other proteins in same PDB: d2p76a2, d2p76b2, d2p76c2, d2p76d2, d2p76e2, d2p76f2, d2p76g2, d2p76h2
        automated match to d2ooga_
        complexed with gol, na
      5. 2425274Domain d2p76e1: 2p76 E:44-309 [243452]
        Other proteins in same PDB: d2p76a2, d2p76b2, d2p76c2, d2p76d2, d2p76e2, d2p76f2, d2p76g2, d2p76h2
        automated match to d2ooga_
        complexed with gol, na
      6. 2425275Domain d2p76f1: 2p76 F:44-309 [243453]
        Other proteins in same PDB: d2p76a2, d2p76b2, d2p76c2, d2p76d2, d2p76e2, d2p76f2, d2p76g2, d2p76h2
        automated match to d2ooga_
        complexed with gol, na
      7. 2425276Domain d2p76g1: 2p76 G:44-309 [243454]
        Other proteins in same PDB: d2p76a2, d2p76b2, d2p76c2, d2p76d2, d2p76e2, d2p76f2, d2p76g2, d2p76h2
        automated match to d2ooga_
        complexed with gol, na
      8. 2425277Domain d2p76h1: 2p76 H:44-309 [243455]
        Other proteins in same PDB: d2p76a2, d2p76b2, d2p76c2, d2p76d2, d2p76e2, d2p76f2, d2p76g2, d2p76h2
        automated match to d2ooga_
        complexed with gol, na
  10. 2425278Thermoanaerobacter tengcongensis [TaxId:273068] [188407] (1 PDB entry)
  11. 2425281Thermococcus kodakarensis [TaxId:69014] [268487] (1 PDB entry)

More info for Protein automated matches from c.1.18.0: automated matches

Timeline for Protein automated matches from c.1.18.0: automated matches: