Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class b: All beta proteins [48724] (180 folds)
  3. Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. Superfamily b.1.8: Cu,Zn superoxide dismutase-like [49329] (2 families) (S)
    has additional strand at N-terminus
  5. Family b.1.8.1: Cu,Zn superoxide dismutase-like [49330] (3 proteins)
  6. Protein automated matches [190916] (13 species)
    not a true protein

Species:

  1. Alvinella pompejana [TaxId:6376] [188764] (2 PDB entries)
    1. Domain for 3f7k:
    2. Domain for 3f7l:
  2. Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [334912] (1 PDB entry)
  3. Chaetomium thermophilum [TaxId:759272] [402898] (1 PDB entry)
  4. Cryptococcus liquefaciens [TaxId:104408] [188577] (1 PDB entry)
  5. Human (Homo sapiens) [TaxId:9606] [189462] (4 PDB entries)
    1. Domain for 2xjk:
    2. Domain for 2xjl:
    3. Domain for 4a7g:
    4. Domain for 4bcy:
  6. Nematode (Caenorhabditis elegans) [TaxId:6239] [189491] (2 PDB entries)
    1. Domain for 3kbe:
    2. Domain for 3kbf:
  7. Potentilla atrosanguinea [TaxId:487759] [188394] (1 PDB entry)
  8. Salmonella enterica [TaxId:119912] [255320] (1 PDB entry)
  9. Salmonella typhimurium [TaxId:90371] [397733] (2 PDB entries)
    1. Domains for 6vbs:
      1. Domain d6vbsa_: 6vbs A: [397818]
        Other proteins in same PDB: d6vbsd2
        automated match to d1eqwb_
        complexed with cu, so4, zn
      2. Domain d6vbsb_: 6vbs B: [397738]
        Other proteins in same PDB: d6vbsd2
        automated match to d1eqwb_
        complexed with cu, so4, zn
      3. Domain d6vbsc_: 6vbs C: [397775]
        Other proteins in same PDB: d6vbsd2
        automated match to d1eqwb_
        complexed with cu, so4, zn
      4. Domain d6vbsd1: 6vbs D:1-157 [397769]
        Other proteins in same PDB: d6vbsd2
        automated match to d1eqwb_
        complexed with cu, so4, zn
      5. Domain d6vbse_: 6vbs E: [397741]
        Other proteins in same PDB: d6vbsd2
        automated match to d1eqwb_
        complexed with cu, so4, zn
      6. Domain d6vbsf_: 6vbs F: [397735]
        Other proteins in same PDB: d6vbsd2
        automated match to d1eqwb_
        complexed with cu, so4, zn
    2. Domains for 6vbt:
      1. Domain d6vbta_: 6vbt A: [397749]
        automated match to d1eqwb_
        complexed with cu, zn
      2. Domain d6vbtb_: 6vbt B: [397736]
        automated match to d1eqwb_
        complexed with cu, zn
  10. Salmonella typhimurium [TaxId:909946] [368797] (1 PDB entry)
  11. Solanum lycopersicum [TaxId:4081] [196089] (6 PDB entries)
    1. Domain for 3hog:
    2. Domains for 3km1:
      1. Domain d3km1a_: 3km1 A: [212417]
        automated match to d3pu7b_
        complexed with gol, zn
      2. Domain d3km1b_: 3km1 B: [212418]
        automated match to d3pu7b_
        complexed with gol, zn
    3. Domains for 3km2:
      1. Domain d3km2a_: 3km2 A: [247217]
        automated match to d3hoga_
        complexed with zn
      2. Domain d3km2b_: 3km2 B: [247218]
        automated match to d3hoga_
        complexed with zn
      3. Domain d3km2c_: 3km2 C: [247219]
        automated match to d3hoga_
        complexed with zn
      4. Domain d3km2d_: 3km2 D: [247220]
        automated match to d3hoga_
        complexed with zn
      5. Domain d3km2e_: 3km2 E: [247221]
        automated match to d3hoga_
        complexed with zn
      6. Domain d3km2f_: 3km2 F: [247222]
        automated match to d3hoga_
        complexed with zn
      7. Domain d3km2g_: 3km2 G: [247223]
        automated match to d3hoga_
        complexed with zn
      8. Domain d3km2h_: 3km2 H: [247224]
        automated match to d3hoga_
        complexed with zn
      9. Domain d3km2i_: 3km2 I: [247225]
        automated match to d3hoga_
        complexed with zn
      10. Domain d3km2j_: 3km2 J: [247226]
        automated match to d3hoga_
        complexed with zn
      11. Domain d3km2k_: 3km2 K: [247227]
        automated match to d3hoga_
        complexed with zn
      12. Domain d3km2l_: 3km2 L: [247228]
        automated match to d3hoga_
        complexed with zn
      13. Domain d3km2m_: 3km2 M: [247229]
        automated match to d3hoga_
        complexed with zn
      14. Domain d3km2n_: 3km2 N: [247230]
        automated match to d3hoga_
        complexed with zn
      15. Domain d3km2o_: 3km2 O: [247231]
        automated match to d3hoga_
        complexed with zn
      16. Domain d3km2p_: 3km2 P: [247232]
        automated match to d3hoga_
        complexed with zn
      17. Domain d3km2q_: 3km2 Q: [247233]
        automated match to d3hoga_
        complexed with zn
      18. Domain d3km2r_: 3km2 R: [247234]
        automated match to d3hoga_
        complexed with zn
      19. Domain d3km2s_: 3km2 S: [247235]
        automated match to d3hoga_
        complexed with zn
      20. Domain d3km2t_: 3km2 T: [247236]
        automated match to d3hoga_
        complexed with zn
      21. Domain d3km2u_: 3km2 U: [247237]
        automated match to d3hoga_
        complexed with zn
      22. Domain d3km2v_: 3km2 V: [247238]
        automated match to d3hoga_
        complexed with zn
      23. Domain d3km2w_: 3km2 W: [247239]
        automated match to d3hoga_
        complexed with zn
      24. Domain d3km2x_: 3km2 X: [247240]
        automated match to d3hoga_
        complexed with zn
    4. Domains for 3mkg:
      1. Domain d3mkga_: 3mkg A: [213290]
        automated match to d3pu7b_
        complexed with zn
      2. Domain d3mkgb_: 3mkg B: [213291]
        automated match to d3pu7b_
        complexed with zn
    5. Domains for 3pu7:
      1. Domain d3pu7a_: 3pu7 A: [200229]
        automated match to d3pu7b_
        complexed with cu, zn
      2. Domain d3pu7b_: 3pu7 B: [196090]
        automated match to d1srda_
        complexed with cu, zn
    6. Domains for 3s0p:
      1. Domain d3s0pa_: 3s0p A: [249255]
        automated match to d3hoga_
        complexed with cu
      2. Domain d3s0pc_: 3s0p C: [249256]
        automated match to d3hoga_
        complexed with cu
      3. Domain d3s0pe_: 3s0p E: [249257]
        automated match to d3hoga_
        complexed with cu
      4. Domain d3s0pf_: 3s0p F: [249258]
        automated match to d3hoga_
        complexed with cu
      5. Domain d3s0pg_: 3s0p G: [249259]
        automated match to d3hoga_
        complexed with cu
      6. Domain d3s0ph_: 3s0p H: [249260]
        automated match to d3hoga_
        complexed with cu
  12. Taenia solium [TaxId:6204] [189715] (1 PDB entry)
  13. Yersinia pseudotuberculosis [TaxId:633] [189541] (4 PDB entries)
    1. Domains for 2wn0:
      1. Domain d2wn0a_: 2wn0 A: [304603]
        automated match to d2wwoa_
        complexed with cu, gol, mes, zn
      2. Domain d2wn0b_: 2wn0 B: [304604]
        automated match to d2wwoa_
        complexed with cu, gol, mes, zn
    2. Domains for 2wn1:
      1. Domain d2wn1a_: 2wn1 A: [304605]
        automated match to d2wwoa_
        complexed with azi, cu, mes, zn
      2. Domain d2wn1b_: 2wn1 B: [304606]
        automated match to d2wwoa_
        complexed with azi, cu, mes, zn
    3. Domains for 2wwn:
      1. Domain d2wwna_: 2wwn A: [169668]
        automated match to d1eqwa_
        complexed with azi, mes, zn
      2. Domain d2wwnb_: 2wwn B: [169669]
        automated match to d1eqwa_
        complexed with azi, mes, zn
    4. Domains for 2wwo:
      1. Domain d2wwoa_: 2wwo A: [169670]
        automated match to d1eqwa_
        complexed with gol, mes, zn
      2. Domain d2wwob_: 2wwo B: [169671]
        automated match to d1eqwa_
        complexed with gol, mes, zn

More info for Protein automated matches from b.1.8.1: Cu,Zn superoxide dismutase-like

Timeline for Protein automated matches from b.1.8.1: Cu,Zn superoxide dismutase-like: