Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2318756Fold a.35: lambda repressor-like DNA-binding domains [47412] (1 superfamily)
    core: 4 helices; folded leaf, closed
  4. 2318757Superfamily a.35.1: lambda repressor-like DNA-binding domains [47413] (14 families) (S)
  5. 2319204Family a.35.1.0: automated matches [191534] (1 protein)
    not a true family
  6. 2319205Protein automated matches [190907] (14 species)
    not a true protein

Species:

  1. 2319206Corynebacterium glutamicum [TaxId:1718] [346176] (2 PDB entries)
    1. Domains for 3f51:
      1. 2319209Domain d3f51b1: 3f51 B:19-107 [344710]
        Other proteins in same PDB: d3f51b2
        automated match to d5woqa_
        complexed with act, mpd
      2. 3052680Domain d3f51c1: 3f51 C:23-107 [352742]
        Other proteins in same PDB: d3f51c2, d3f51d2, d3f51e2, d3f51f2
        automated match to d3f52a_
        complexed with act, mpd
      3. 3052707Domain d3f51f1: 3f51 F:21-107 [352769]
        Other proteins in same PDB: d3f51c2, d3f51d2, d3f51e2, d3f51f2
        automated match to d3f52a_
        complexed with act, mpd
      4. 3052729Domain d3f51d1: 3f51 D:20-107 [352791]
        Other proteins in same PDB: d3f51c2, d3f51d2, d3f51e2, d3f51f2
        automated match to d3f52a_
        complexed with act, mpd
      5. 3052866Domain d3f51e1: 3f51 E:19-107 [352928]
        Other proteins in same PDB: d3f51c2, d3f51d2, d3f51e2, d3f51f2
        automated match to d3f52a_
        complexed with act, mpd
    2. Domains for 3f52:
      1. 2319207Domain d3f52a_: 3f52 A: [344712]
        automated match to d5woqa_
        complexed with gol
      2. 2319208Domain d3f52e_: 3f52 E: [344713]
        automated match to d5woqa_
        complexed with gol
  2. 2319210Enterobacter sp. [TaxId:211595] [189872] (13 PDB entries)
    1. Domains for 3clc:
      1. 2319251Domain d3clca_: 3clc A: [173309]
        automated match to d2b5ad1
        protein/DNA complex; complexed with mg
      2. 2319252Domain d3clcb_: 3clc B: [173310]
        automated match to d2b5ad1
        protein/DNA complex; complexed with mg
      3. 2319253Domain d3clcc_: 3clc C: [173311]
        automated match to d2b5ad1
        protein/DNA complex; complexed with mg
      4. 2319254Domain d3clcd_: 3clc D: [173312]
        automated match to d2b5ad1
        protein/DNA complex; complexed with mg
    2. Domains for 3fya:
      1. 2319259Domain d3fyaa_: 3fya A: [246198]
        automated match to d4i6ua_
        mutant
      2. 2319260Domain d3fyab_: 3fya B: [246199]
        automated match to d4i6ua_
        mutant
    3. Domains for 3g5g:
      1. 2319237Domain d3g5ga_: 3g5g A: [210383]
        automated match to d4f8da_
      2. 2319238Domain d3g5gb_: 3g5g B: [210384]
        automated match to d4f8da_
      3. 2319239Domain d3g5gc_: 3g5g C: [210385]
        automated match to d4f8da_
      4. 2319240Domain d3g5gd_: 3g5g D: [210386]
        automated match to d4f8da_
      5. 2319241Domain d3g5ge_: 3g5g E: [210387]
        automated match to d4f8da_
      6. 2319242Domain d3g5gf_: 3g5g F: [210388]
        automated match to d4f8da_
      7. 2319243Domain d3g5gg_: 3g5g G: [210389]
        automated match to d4f8da_
      8. 2319244Domain d3g5gh_: 3g5g H: [210390]
        automated match to d4f8da_
      9. 2319245Domain d3g5gi_: 3g5g I: [210391]
        automated match to d4f8da_
      10. 2319246Domain d3g5gj_: 3g5g J: [210392]
        automated match to d4f8da_
      11. 2319247Domain d3g5gk_: 3g5g K: [210393]
        automated match to d4f8da_
      12. 2319248Domain d3g5gl_: 3g5g L: [210394]
        automated match to d4f8da_
      13. 2319249Domain d3g5gm_: 3g5g M: [210395]
        automated match to d4f8da_
      14. 2319250Domain d3g5gn_: 3g5g N: [210396]
        automated match to d4f8da_
    4. Domains for 3s8q:
      1. 2319219Domain d3s8qa_: 3s8q A: [185316]
        automated match to d2b5ad1
        protein/DNA complex
      2. 2319220Domain d3s8qb_: 3s8q B: [185317]
        automated match to d2b5ad1
        protein/DNA complex
    5. Domains for 4f8d:
      1. 2319217Domain d4f8da_: 4f8d A: [196769]
        automated match to d3s8qb_
        complexed with na, so4; mutant
      2. 2319218Domain d4f8db_: 4f8d B: [202020]
        automated match to d4f8da_
        complexed with na, so4; mutant
    6. Domains for 4fbi:
      1. 2319213Domain d4fbia_: 4fbi A: [221102]
        automated match to d4f8da_
        complexed with gol; mutant
      2. 2319214Domain d4fbib_: 4fbi B: [221103]
        automated match to d4f8da_
        complexed with gol; mutant
      3. 2319215Domain d4fbic_: 4fbi C: [221104]
        automated match to d4f8da_
        complexed with gol; mutant
      4. 2319216Domain d4fbid_: 4fbi D: [221105]
        automated match to d4f8da_
        complexed with gol; mutant
    7. Domains for 4fn3:
      1. 2319221Domain d4fn3a_: 4fn3 A: [197160]
        automated match to d3s8qb_
        complexed with so4; mutant
      2. 2319222Domain d4fn3b_: 4fn3 B: [197153]
        automated match to d3s8qb_
        complexed with so4; mutant
    8. Domains for 4i6r:
      1. 2319211Domain d4i6ra_: 4i6r A: [228933]
        automated match to d3s8qb_
        complexed with gol, so4
      2. 2319212Domain d4i6rb_: 4i6r B: [228932]
        automated match to d3s8qb_
        complexed with gol, so4
    9. Domains for 4i6t:
      1. 2319231Domain d4i6ta_: 4i6t A: [234820]
        automated match to d4i6tb_
        complexed with mli; mutant
      2. 2319232Domain d4i6tb_: 4i6t B: [228934]
        automated match to d3g5gb_
        complexed with mli; mutant
    10. Domains for 4i6u:
      1. 2319225Domain d4i6ua_: 4i6u A: [234822]
        automated match to d4i6ue_
        complexed with act, gol, na, peg; mutant
      2. 2319226Domain d4i6ub_: 4i6u B: [234821]
        automated match to d4i6ue_
        complexed with act, gol, na, peg; mutant
      3. 2319227Domain d4i6uc_: 4i6u C: [234823]
        automated match to d4i6ue_
        complexed with act, gol, na, peg; mutant
      4. 2319228Domain d4i6ud_: 4i6u D: [234824]
        automated match to d4i6ue_
        complexed with act, gol, na, peg; mutant
      5. 2319229Domain d4i6ue_: 4i6u E: [228931]
        automated match to d3g5gb_
        complexed with act, gol, na, peg; mutant
      6. 2319230Domain d4i6uf_: 4i6u F: [234825]
        automated match to d4i6ue_
        complexed with act, gol, na, peg; mutant
    11. Domains for 4ia8:
      1. 2319223Domain d4ia8a_: 4ia8 A: [234841]
        automated match to d4ia8b_
        complexed with so4; mutant
      2. 2319224Domain d4ia8b_: 4ia8 B: [229588]
        automated match to d3g5gb_
        complexed with so4; mutant
    12. Domains for 4ivz:
      1. 2319255Domain d4ivza_: 4ivz A: [252728]
        automated match to d4i6ua_
        protein/DNA complex; mutant
      2. 2319256Domain d4ivzb_: 4ivz B: [252729]
        automated match to d4i6ua_
        protein/DNA complex; mutant
      3. 2319257Domain d4ivze_: 4ivz E: [252730]
        automated match to d4i6ua_
        protein/DNA complex; mutant
      4. 2319258Domain d4ivzf_: 4ivz F: [252731]
        automated match to d4i6ua_
        protein/DNA complex; mutant
    13. Domains for 4iwr:
      1. 2319233Domain d4iwra_: 4iwr A: [227872]
        automated match to d3clca_
        protein/DNA complex
      2. 2319234Domain d4iwrb_: 4iwr B: [227873]
        automated match to d3clca_
        protein/DNA complex
      3. 2319235Domain d4iwre_: 4iwr E: [227870]
        automated match to d3clca_
        protein/DNA complex
      4. 2319236Domain d4iwrf_: 4iwr F: [227871]
        automated match to d3clca_
        protein/DNA complex
  3. 2319261Enterococcus faecalis [TaxId:1351] [255039] (5 PDB entries)
    1. Domain for 2aw6:
    2. Domains for 2axv:
      1. 2319273Domain d2axva1: 2axv A:2-66 [127524]
        Other proteins in same PDB: d2axva2, d2axvb2, d2axvc2, d2axvd2
        automated match to d2awia1
        mutant
      2. 2319274Domain d2axvb1: 2axv B:2-66 [127526]
        Other proteins in same PDB: d2axva2, d2axvb2, d2axvc2, d2axvd2
        automated match to d2awia1
        mutant
      3. 2319275Domain d2axvc1: 2axv C:2-66 [127528]
        Other proteins in same PDB: d2axva2, d2axvb2, d2axvc2, d2axvd2
        automated match to d2awia1
        mutant
      4. 2319276Domain d2axvd1: 2axv D:2-66 [127530]
        Other proteins in same PDB: d2axva2, d2axvb2, d2axvc2, d2axvd2
        automated match to d2awia1
        mutant
    3. Domains for 2axz:
      1. 2319267Domain d2axza1: 2axz A:1-66 [127536]
        Other proteins in same PDB: d2axza2, d2axzb2, d2axzc2, d2axzd2
        automated match to d2awia1
        protein/DNA complex
      2. 2319268Domain d2axzb1: 2axz B:1-66 [127538]
        Other proteins in same PDB: d2axza2, d2axzb2, d2axzc2, d2axzd2
        automated match to d2awia1
        protein/DNA complex
      3. 2319269Domain d2axzc1: 2axz C:2-66 [127540]
        Other proteins in same PDB: d2axza2, d2axzb2, d2axzc2, d2axzd2
        automated match to d2awia1
        protein/DNA complex
      4. 2319270Domain d2axzd1: 2axz D:1-66 [127542]
        Other proteins in same PDB: d2axza2, d2axzb2, d2axzc2, d2axzd2
        automated match to d2awia1
        protein/DNA complex
    4. Domains for 2grl:
      1. 2319263Domain d2grla1: 2grl A:1-66 [135560]
        Other proteins in same PDB: d2grla2, d2grlb2, d2grlc2, d2grld2
        automated match to d2awia1
      2. 2319264Domain d2grlb1: 2grl B:1-66 [135562]
        Other proteins in same PDB: d2grla2, d2grlb2, d2grlc2, d2grld2
        automated match to d2awia1
      3. 2319265Domain d2grlc1: 2grl C:1-66 [135564]
        Other proteins in same PDB: d2grla2, d2grlb2, d2grlc2, d2grld2
        automated match to d2awia1
      4. 2319266Domain d2grld1: 2grl D:1-66 [135566]
        Other proteins in same PDB: d2grla2, d2grlb2, d2grlc2, d2grld2
        automated match to d2awia1
    5. Domains for 2grm:
      1. 2319271Domain d2grmb1: 2grm B:1-66 [147163]
        Other proteins in same PDB: d2grma1, d2grma2, d2grmb2, d2grmc2
        automated match to d2awia1
      2. 2319272Domain d2grmc1: 2grm C:1-66 [238649]
        Other proteins in same PDB: d2grma1, d2grma2, d2grmb2, d2grmc2
        automated match to d2awia1
  4. 2319277Escherichia coli [TaxId:362663] [255416] (2 PDB entries)
    1. Domain for 2l8n:
    2. Domain for 2lcv:
  5. 2319280Escherichia coli [TaxId:536056] [311441] (1 PDB entry)
  6. 2319283Escherichia coli [TaxId:562] [255139] (1 PDB entry)
  7. 2319286Mouse (Mus musculus) [TaxId:10090] [226005] (1 PDB entry)
  8. 2319288Mycobacterium smegmatis [TaxId:246196] [338077] (1 PDB entry)
  9. 2319292Neisseria meningitidis [TaxId:122586] [256137] (1 PDB entry)
  10. 2319296Pseudomonas fluorescens [TaxId:220664] [188360] (1 PDB entry)
  11. 2319299Serratia proteamaculans [TaxId:399741] [271341] (2 PDB entries)
    1. Domains for 4y42:
      1. 2319305Domain d4y42a1: 4y42 A:2-86 [271342]
        Other proteins in same PDB: d4y42a2, d4y42b2, d4y42c2, d4y42d2, d4y42e2, d4y42f2, d4y42g2, d4y42h2, d4y42i2, d4y42j2
        automated match to d1dwka1
        complexed with gol
      2. 2319306Domain d4y42b1: 4y42 B:2-86 [271357]
        Other proteins in same PDB: d4y42a2, d4y42b2, d4y42c2, d4y42d2, d4y42e2, d4y42f2, d4y42g2, d4y42h2, d4y42i2, d4y42j2
        automated match to d1dwka1
        complexed with gol
      3. 2319307Domain d4y42c1: 4y42 C:2-86 [271355]
        Other proteins in same PDB: d4y42a2, d4y42b2, d4y42c2, d4y42d2, d4y42e2, d4y42f2, d4y42g2, d4y42h2, d4y42i2, d4y42j2
        automated match to d1dwka1
        complexed with gol
      4. 2319308Domain d4y42d1: 4y42 D:2-86 [271353]
        Other proteins in same PDB: d4y42a2, d4y42b2, d4y42c2, d4y42d2, d4y42e2, d4y42f2, d4y42g2, d4y42h2, d4y42i2, d4y42j2
        automated match to d1dwka1
        complexed with gol
      5. 2319309Domain d4y42e1: 4y42 E:2-86 [271361]
        Other proteins in same PDB: d4y42a2, d4y42b2, d4y42c2, d4y42d2, d4y42e2, d4y42f2, d4y42g2, d4y42h2, d4y42i2, d4y42j2
        automated match to d1dwka1
        complexed with gol
      6. 2319310Domain d4y42f1: 4y42 F:2-86 [271363]
        Other proteins in same PDB: d4y42a2, d4y42b2, d4y42c2, d4y42d2, d4y42e2, d4y42f2, d4y42g2, d4y42h2, d4y42i2, d4y42j2
        automated match to d1dwka1
        complexed with gol
      7. 2319311Domain d4y42g1: 4y42 G:2-86 [271359]
        Other proteins in same PDB: d4y42a2, d4y42b2, d4y42c2, d4y42d2, d4y42e2, d4y42f2, d4y42g2, d4y42h2, d4y42i2, d4y42j2
        automated match to d1dwka1
        complexed with gol
      8. 2319312Domain d4y42h1: 4y42 H:2-86 [271365]
        Other proteins in same PDB: d4y42a2, d4y42b2, d4y42c2, d4y42d2, d4y42e2, d4y42f2, d4y42g2, d4y42h2, d4y42i2, d4y42j2
        automated match to d1dwka1
        complexed with gol
      9. 2319313Domain d4y42i1: 4y42 I:2-86 [271367]
        Other proteins in same PDB: d4y42a2, d4y42b2, d4y42c2, d4y42d2, d4y42e2, d4y42f2, d4y42g2, d4y42h2, d4y42i2, d4y42j2
        automated match to d1dwka1
        complexed with gol
      10. 2319314Domain d4y42j1: 4y42 J:2-86 [271369]
        Other proteins in same PDB: d4y42a2, d4y42b2, d4y42c2, d4y42d2, d4y42e2, d4y42f2, d4y42g2, d4y42h2, d4y42i2, d4y42j2
        automated match to d1dwka1
        complexed with gol
    2. Domains for 6b6m:
      1. 2319300Domain d6b6ma1: 6b6m A:2-86 [340374]
        Other proteins in same PDB: d6b6ma2, d6b6mb2, d6b6mc2, d6b6md2, d6b6me2
        automated match to d4y42a1
      2. 2319301Domain d6b6mb1: 6b6m B:2-86 [340410]
        Other proteins in same PDB: d6b6ma2, d6b6mb2, d6b6mc2, d6b6md2, d6b6me2
        automated match to d4y42a1
      3. 2319302Domain d6b6mc1: 6b6m C:2-86 [340393]
        Other proteins in same PDB: d6b6ma2, d6b6mb2, d6b6mc2, d6b6md2, d6b6me2
        automated match to d4y42a1
      4. 2319303Domain d6b6md1: 6b6m D:2-86 [340425]
        Other proteins in same PDB: d6b6ma2, d6b6mb2, d6b6mc2, d6b6md2, d6b6me2
        automated match to d4y42a1
      5. 2319304Domain d6b6me1: 6b6m E:2-86 [340401]
        Other proteins in same PDB: d6b6ma2, d6b6mb2, d6b6mc2, d6b6md2, d6b6me2
        automated match to d4y42a1
  12. 3054451Pseudomonas putida [TaxId:303] [354513] (1 PDB entry)
  13. 3054578Pseudomonas fluorescens [TaxId:1218948] [354640] (1 PDB entry)
  14. 3056522Thermobifida fusca [TaxId:269800] [356584] (1 PDB entry)

More info for Protein automated matches from a.35.1.0: automated matches

Timeline for Protein automated matches from a.35.1.0: automated matches: