SCOPe 2.05: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.05
Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
Superfamily d.58.7: RNA-binding domain, RBD [54928] (6 families)
Family d.58.7.0: automated matches [191529] (1 protein)
not a true family
Protein automated matches [190896] (9 species)
not a true protein

Species:

Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [189319] (8 PDB entries)
1. Domains for 2km8:
  1. Domain d2km8b_: 2km8 B: [242561]
    automated match to d2x1ba_
    protein/RNA complex
  2. Domain d2km8c1: 2km8 C:156-241 [242562]
    automated match to d1u1qa1
    protein/RNA complex
  3. Domain d2km8c2: 2km8 C:242-322 [242563]
    automated match to d1u1qa2
    protein/RNA complex
2. Domain for 2la4:
  - Domain d2la4a_: 2la4 A: [242821]
    automated match to d1x4ga1
3. Domain for 2x1a:
  - Domain d2x1aa_: 2x1a A: [207098]
    automated match to d1x5ta1
    protein/RNA complex; complexed with mg
4. Domain for 2x1b:
  - Domain d2x1ba_: 2x1b A: [207099]
    automated match to d1x5ta1
    complexed with po4
5. Domain for 2x1f:
  - Domain d2x1fa_: 2x1f A: [207100]
    automated match to d1x5ta1
    protein/RNA complex
6. Domains for 3md1:
  1. Domain d3md1a_: 3md1 A: [181013]
    automated match to d1x5sa1
    complexed with gol
  2. Domain d3md1b_: 3md1 B: [181014]
    automated match to d1x5sa1
    complexed with gol
7. Domains for 3md3:
  1. Domain d3md3a1: 3md3 A:75-159 [265066]
    automated match to d1cvja1
    complexed with gol, so4
  2. Domain d3md3a2: 3md3 A:160-240 [265067]
    automated match to d1cvja1
    complexed with gol, so4
8. Domain for 4uqt:
  - Domain d4uqta_: 4uqt A: [259556]
    automated match to d2rraa_
Barley (Hordeum vulgare) [TaxId:4513] [261791] (1 PDB entry)
- Domain for 2mpu:
  - Domain d2mpua_: 2mpu A: [261792]
    automated match to d4c7qa_
Helicobacter pylori [TaxId:210] [255348] (1 PDB entry)
- Domain for 2ki2:
  - Domain d2ki2a_: 2ki2 A: [242518]
    automated match to d3ucga_
    protein/DNA complex; protein/RNA complex
Human (Homo sapiens) [TaxId:9606] [188315] (74 PDB entries)
1. Domain for 2d9p:
  - Domain d2d9pa_: 2d9p A: [241526]
    automated match to d1wf2a_
2. Domain for 2dgp:
  - Domain d2dgpa_: 2dgp A: [241557]
    automated match to d1sxla_
3. Domain for 2dgq:
  - Domain d2dgqa_: 2dgq A: [241558]
    automated match to d2cpza1
4. Domain for 2dgs:
  - Domain d2dgsa_: 2dgs A: [241559]
    automated match to d1whwa_
5. Domain for 2dgt:
  - Domain d2dgta_: 2dgt A: [241560]
    automated match to d1whwa_
6. Domain for 2dgu:
  - Domain d2dgua_: 2dgu A: [241561]
    automated match to d2cpda1
7. Domain for 2dgv:
  - Domain d2dgva_: 2dgv A: [241562]
    automated match to d2ywka_
8. Domain for 2dh8:
  - Domain d2dh8a_: 2dh8 A: [241565]
    automated match to d1d8za_
9. Domain for 2dh9:
  - Domain d2dh9a_: 2dh9 A: [241566]
    automated match to d2ywka_
10. Domain for 2dhg:
  - Domain d2dhga_: 2dhg A: [241567]
    automated match to d2sxla_
11. Domain for 2div:
  - Domain d2diva_: 2div A: [241571]
    automated match to d1d8za_
12. Domain for 2dk2:
  - Domain d2dk2a_: 2dk2 A: [241580]
    automated match to d1wf2a_
13. Domain for 2dnh:
  - Domain d2dnha_: 2dnh A: [241625]
    automated match to d1d9aa_
14. Domain for 2dnk:
  - Domain d2dnka_: 2dnk A: [241626]
    automated match to d1wf2a_
15. Domain for 2dnm:
  - Domain d2dnma_: 2dnm A: [241627]
    automated match to d1wf1a_
16. Domain for 2dno:
  - Domain d2dnoa_: 2dno A: [241629]
    automated match to d1d9aa_
17. Domain for 2dnp:
  - Domain d2dnpa_: 2dnp A: [241630]
    automated match to d1wf2a_
18. Domain for 2dnq:
  - Domain d2dnqa_: 2dnq A: [241631]
    automated match to d1wg1a_
19. Domain for 2dny:
  - Domain d2dnya_: 2dny A: [241634]
    automated match to d2pe8a_
20. Domain for 2do4:
  - Domain d2do4a_: 2do4 A: [241636]
    automated match to d1x4aa1
21. Domain for 2e5h:
  - Domain d2e5ha_: 2e5h A: [241687]
    automated match to d1x5sa1
22. Domain for 2fc8:
  - Domain d2fc8a_: 2fc8 A: [241827]
    automated match to d1oo0b_
23. Domain for 2fc9:
  - Domain d2fc9a_: 2fc9 A: [241828]
    automated match to d3mdfa_
24. Domain for 2fho:
  - Domain d2fhob_: 2fho B: [241851]
    automated match to d2cqca1
    protein/RNA complex
25. Domain for 2hgl:
  - Domain d2hgla_: 2hgl A: [264299]
    automated match to d2kg0a_
26. Domain for 2hgm:
  - Domain d2hgma_: 2hgm A: [242035]
    automated match to d2ek1g_
27. Domain for 2k8g:
  - Domain d2k8ga_: 2k8g A: [242414]
    automated match to d2erra1
28. Domain for 2kfy:
  - Domain d2kfya_: 2kfy A: [264349]
    automated match to d2kg0a_
    protein/RNA complex
29. Domain for 2kg0:
  - Domain d2kg0a_: 2kg0 A: [242506]
    automated match to d2ek1g_
    protein/RNA complex
30. Domains for 2kxf:
  1. Domain d2kxfa1: 2kxf A:99-200 [264362]
    automated match to d2mpua_
  2. Domain d2kxfa2: 2kxf A:201-297 [264363]
    automated match to d2mpua_
31. Domains for 2kxh:
  1. Domain d2kxha1: 2kxh A:99-200 [264364]
    automated match to d2mpua_
  2. Domain d2kxha2: 2kxh A:201-297 [264365]
    automated match to d2mpua_
32. Domain for 2la6:
  - Domain d2la6a_: 2la6 A: [242822]
    automated match to d2cpea1
33. Domain for 2lcw:
  - Domain d2lcwa_: 2lcw A: [242846]
    automated match to d2cpea1
34. Domain for 2lea:
  - Domain d2leaa_: 2lea A: [242856]
    automated match to d2cqda1
35. Domain for 2leb:
  - Domain d2leba_: 2leb A: [242857]
    automated match to d2cqda1
    protein/RNA complex
36. Domain for 2lec:
  - Domain d2leca_: 2lec A: [242858]
    automated match to d2cqda1
    protein/RNA complex
37. Domain for 2lmi:
  - Domain d2lmia_: 2lmi A: [278381]
    automated match to d2hgla_
38. Domain for 2lxi:
  - Domain d2lxia_: 2lxi A: [243025]
    automated match to d3hi9b_
39. Domain for 2m3d:
  - Domain d2m3da_: 2m3d A: [243090]
    automated match to d2e29a1
40. Domain for 2m8h:
  - Domain d2m8ha_: 2m8h A: [268013]
    automated match to d1d8za_
41. Domain for 2mb0:
  - Domain d2mb0b_: 2mb0 B: [264385]
    automated match to d2mksa_
    protein/RNA complex
42. Domain for 2mik:
  - Domain d2mika_: 2mik A: [261787]
    automated match to d2rraa_
43. Domain for 2mil:
  - Domain d2mila_: 2mil A: [261788]
    automated match to d2rraa_
44. Domain for 2mks:
  - Domain d2mksa_: 2mks A: [243195]
    automated match to d2cqia1
45. Domain for 2mmy:
  - Domain d2mmya_: 2mmy A: [270275]
    automated match to d2cpea1
46. Domain for 2pe8:
  - Domain d2pe8a_: 2pe8 A: [205511]
    automated match to d2dita1
47. Domain for 2rra:
  - Domain d2rraa_: 2rra A: [243757]
    automated match to d2cpza1
    protein/RNA complex
48. Domain for 2rrb:
  - Domain d2rrba_: 2rrb A: [243758]
    automated match to d1x4aa1
49. Domain for 2ytc:
  - Domain d2ytca_: 2ytc A: [264617]
    automated match to d2rraa_
50. Domain for 2ywk:
  - Domain d2ywka_: 2ywk A: [170890]
    automated match to d1x5ua1
51. Domain for 3b4d:
  - Domain d3b4da_: 3b4d A: [208516]
    automated match to d2cpea1
52. Domains for 3b4m:
  1. Domain d3b4ma_: 3b4m A: [208517]
    automated match to d2cpea1
  2. Domain d3b4mb_: 3b4m B: [208518]
    automated match to d2cpea1
  3. Domain d3b4mc_: 3b4m C: [208519]
    automated match to d2cpea1
  4. Domain d3b4md_: 3b4m D: [208520]
    automated match to d2cpea1
53. Domains for 3bs9:
  1. Domain d3bs9a_: 3bs9 A: [172805]
    automated match to d1x5sa1
    complexed with iod
  2. Domain d3bs9b_: 3bs9 B: [172806]
    automated match to d1x5sa1
    complexed with iod
54. Domain for 3egn:
  - Domain d3egna_: 3egn A: [245860]
    automated match to d2cpxa1
55. Domains for 3hi9:
  1. Domain d3hi9a_: 3hi9 A: [211068]
    automated match to d1oo0b_
  2. Domain d3hi9b_: 3hi9 B: [211069]
    automated match to d1oo0b_
  3. Domain d3hi9c_: 3hi9 C: [211070]
    automated match to d1oo0b_
  4. Domain d3hi9d_: 3hi9 D: [211071]
    automated match to d1oo0b_
56. Domain for 3n9u:
  - Domain d3n9ui_: 3n9u I: [265075]
    automated match to d4c7qa_
    protein/RNA complex; complexed with gol
57. Domains for 3p5t:
  1. Domain d3p5tl_: 3p5t L: [265145]
    automated match to d4c7qa_
    protein/RNA complex
  2. Domain d3p5tm_: 3p5t M: [265146]
    automated match to d4c7qa_
    protein/RNA complex
  3. Domain d3p5tn_: 3p5t N: [265147]
    automated match to d4c7qa_
    protein/RNA complex
  4. Domain d3p5to_: 3p5t O: [265148]
    automated match to d4c7qa_
    protein/RNA complex
  5. Domain d3p5tp_: 3p5t P: [265149]
    automated match to d4c7qa_
    protein/RNA complex
  6. Domain d3p5tq_: 3p5t Q: [265150]
    automated match to d4c7qa_
    protein/RNA complex
58. Domains for 3p6y:
  1. Domain d3p6yc_: 3p6y C: [265151]
    automated match to d4c7qa_
    protein/RNA complex
  2. Domain d3p6yd_: 3p6y D: [265152]
    automated match to d4c7qa_
    protein/RNA complex
  3. Domain d3p6yg_: 3p6y G: [265153]
    automated match to d4c7qa_
    protein/RNA complex
  4. Domain d3p6yh_: 3p6y H: [265154]
    automated match to d4c7qa_
    protein/RNA complex
  5. Domain d3p6yk_: 3p6y K: [265155]
    automated match to d4c7qa_
    protein/RNA complex
  6. Domain d3p6yl_: 3p6y L: [265156]
    automated match to d4c7qa_
    protein/RNA complex
  7. Domain d3p6yo_: 3p6y O: [265157]
    automated match to d4c7qa_
    protein/RNA complex
  8. Domain d3p6yp_: 3p6y P: [265158]
    automated match to d4c7qa_
    protein/RNA complex
59. Domains for 3q2s:
  1. Domain d3q2sc_: 3q2s C: [265241]
    automated match to d2mpua_
    protein/RNA complex
  2. Domain d3q2sd_: 3q2s D: [265242]
    automated match to d2mpua_
    protein/RNA complex
60. Domains for 3r27:
  1. Domain d3r27a_: 3r27 A: [200430]
    automated match to d3r27b_
    complexed with gol
  2. Domain d3r27b_: 3r27 B: [196174]
    automated match to d1wexa_
    complexed with gol
61. Domains for 3rw7:
  1. Domain d3rw7a1: 3rw7 A:118-199 [249238]
    Other proteins in same PDB: d3rw7a2, d3rw7b_, d3rw7c2, d3rw7d_
    automated match to d1kooa2
  2. Domain d3rw7c1: 3rw7 C:117-198 [249241]
    Other proteins in same PDB: d3rw7a2, d3rw7b_, d3rw7c2, d3rw7d_
    automated match to d1kooa2
62. Domain for 3ucg:
  - Domain d3ucga_: 3ucg A: [217298]
    automated match to d2cpea1
    complexed with edo, peg, pge, so4
63. Domain for 3ue2:
  - Domain d3ue2a_: 3ue2 A: [186248]
    automated match to d2dita1
    complexed with so4
64. Domain for 3us5:
  - Domain d3us5a_: 3us5 A: [186387]
    automated match to d2dita1
    complexed with cl
65. Domains for 3uwt:
  1. Domain d3uwta1: 3uwt A:0-217 [265542]
    automated match to d2mpua_
    complexed with cl
  2. Domain d3uwta2: 3uwt A:218-313 [265543]
    automated match to d2mpua_
    complexed with cl
66. Domain for 4a8x:
  - Domain d4a8xa_: 4a8x A: [218719]
    automated match to d2cqia1
    protein/RNA complex
67. Domains for 4cq1:
  1. Domain d4cq1a2: 4cq1 A:445-531 [237006]
    Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
    automated match to d4ckob2
    complexed with cl, zn
  2. Domain d4cq1b2: 4cq1 B:445-531 [237000]
    Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
    automated match to d4ckob2
    complexed with cl, zn
  3. Domain d4cq1c2: 4cq1 C:445-531 [237001]
    Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
    automated match to d4ckob2
    complexed with cl, zn
  4. Domain d4cq1d2: 4cq1 D:445-531 [237005]
    Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
    automated match to d4ckob2
    complexed with cl, zn
  5. Domain d4cq1e2: 4cq1 E:445-531 [237004]
    Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
    automated match to d4ckob2
    complexed with cl, zn
  6. Domain d4cq1f2: 4cq1 F:445-531 [237003]
    Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
    automated match to d4ckob2
    complexed with cl, zn
  7. Domain d4cq1g2: 4cq1 G:445-531 [236999]
    Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
    automated match to d4ckob2
    complexed with cl, zn
  8. Domain d4cq1h2: 4cq1 H:445-531 [237002]
    Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
    automated match to d4ckob2
    complexed with cl, zn
68. Domains for 4ed5:
  1. Domain d4ed5a1: 4ed5 A:18-99 [234372]
    automated match to d1fxla1
    protein/RNA complex; complexed with edo, gol, m2m
  2. Domain d4ed5a2: 4ed5 A:100-185 [234388]
    automated match to d1fxla2
    protein/RNA complex; complexed with edo, gol, m2m
  3. Domain d4ed5b1: 4ed5 B:18-99 [234373]
    automated match to d1fxla1
    protein/RNA complex; complexed with edo, gol, m2m
  4. Domain d4ed5b2: 4ed5 B:100-186 [234387]
    automated match to d1fxla2
    protein/RNA complex; complexed with edo, gol, m2m
69. Domains for 4egl:
  1. Domain d4egla1: 4egl A:18-99 [234378]
    automated match to d1fxla1
    complexed with gol, so4
  2. Domain d4egla2: 4egl A:100-184 [234389]
    automated match to d1fxla2
    complexed with gol, so4
70. Domain for 4f25:
  - Domain d4f25a_: 4f25 A: [220949]
    automated match to d1x4ha1
71. Domain for 4f26:
  - Domain d4f26a_: 4f26 A: [220950]
    automated match to d1x4ha1
72. Domains for 4fxv:
  1. Domain d4fxva_: 4fxv A: [221592]
    automated match to d2cpja1
  2. Domain d4fxvb_: 4fxv B: [221593]
    automated match to d2cpja1
  3. Domain d4fxvc_: 4fxv C: [221594]
    automated match to d2cpja1
  4. Domain d4fxvd_: 4fxv D: [221595]
    automated match to d2cpja1
73. Domains for 4ljm:
  1. Domain d4ljma_: 4ljm A: [257840]
    automated match to d2rraa_
  2. Domain d4ljmb_: 4ljm B: [262951]
    automated match to d2mika_
74. Domains for 4tlq:
  1. Domain d4tlqa_: 4tlq A: [279845]
    automated match to d2mika_
  2. Domain d4tlqb_: 4tlq B: [279846]
    automated match to d2mika_
Mouse (Mus musculus) [TaxId:10090] [226227] (5 PDB entries)
1. Domain for 2dgo:
  - Domain d2dgoa_: 2dgo A: [264253]
    automated match to d2dgua_
2. Domain for 2dng:
  - Domain d2dnga_: 2dng A: [241624]
    automated match to d1wf2a_
3. Domain for 2e5i:
  - Domain d2e5ia_: 2e5i A: [241688]
    automated match to d1sjra_
4. Domain for 2rne:
  - Domain d2rnea_: 2rne A: [264505]
    automated match to d2dgua_
5. Domain for 2xsf:
  - Domain d2xsfa_: 2xsf A: [207329]
    automated match to d3md1b_
    complexed with gol, so4
Nematode (Caenorhabditis elegans) [TaxId:6239] [258940] (1 PDB entry)
- Domain for 2mgz:
  - Domain d2mgza_: 2mgz A: [258941]
    Other proteins in same PDB: d2mgzb_
    automated match to d1p1ta_
    protein/RNA complex
Rattus norvegicus [TaxId:10116] [272199] (3 PDB entries)
1. Domain for 2mqm:
  - Domain d2mqma_: 2mqm A: [272200]
    automated match to d2e5ia_
2. Domain for 2mqo:
  - Domain d2mqoa_: 2mqo A: [280035]
    automated match to d3r27a_
    protein/RNA complex
3. Domain for 2mqp:
  - Domain d2mqpa_: 2mqp A: [280034]
    automated match to d2e5ia_
    protein/RNA complex
Saccharomyces cerevisiae [TaxId:559292] [279753] (3 PDB entries)
1. Domain for 2mzq:
  - Domain d2mzqa_: 2mzq A: [279755]
    automated match to d1x4aa1
2. Domain for 2mzr:
  - Domain d2mzra_: 2mzr A: [279756]
    automated match to d2dh9a_
3. Domain for 2mzs:
  - Domain d2mzsa_: 2mzs A: [279754]
    automated match to d2dh9a_
Tobacco (Nicotiana tabacum) [TaxId:4097] [256225] (1 PDB entry)
- Domain for 4c7q:
  - Domain d4c7qa_: 4c7q A: [251346]
    automated match to d2cqba1

More info for Protein automated matches from d.58.7.0: automated matches

Timeline for Protein automated matches from d.58.7.0: automated matches:

Protein automated matches from d.58.7.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from d.58.7.0: automated matches appears in SCOPe 2.04
Protein automated matches from d.58.7.0: automated matches appears in SCOPe 2.06
Protein automated matches from d.58.7.0: automated matches appears in the current release, SCOPe 2.08