Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1396887Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1413688Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 1415602Superfamily d.58.7: RNA-binding domain, RBD [54928] (6 families) (S)
  5. 1416109Family d.58.7.0: automated matches [191529] (1 protein)
    not a true family
  6. 1416110Protein automated matches [190896] (3 species)
    not a true protein

Species:

  1. 1416111Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [189319] (4 PDB entries)
    1. Domain for 2x1a:
    2. Domain for 2x1b:
    3. Domain for 2x1f:
    4. Domains for 3md1:
      1. 1416112Domain d3md1a_: 3md1 A: [181013]
        automated match to d1x5sa1
        complexed with gol
      2. 1416113Domain d3md1b_: 3md1 B: [181014]
        automated match to d1x5sa1
        complexed with gol
  2. 1416117Human (Homo sapiens) [TaxId:9606] [188315] (18 PDB entries)
    1. Domain for 2pe8:
    2. Domain for 2ywk:
    3. Domain for 3b4d:
    4. Domains for 3b4m:
      1. 1416158Domain d3b4ma_: 3b4m A: [208517]
        automated match to d2cpea1
      2. 1416159Domain d3b4mb_: 3b4m B: [208518]
        automated match to d2cpea1
      3. 1416160Domain d3b4mc_: 3b4m C: [208519]
        automated match to d2cpea1
      4. 1416161Domain d3b4md_: 3b4m D: [208520]
        automated match to d2cpea1
    5. Domains for 3bs9:
      1. 1416152Domain d3bs9a_: 3bs9 A: [172805]
        automated match to d1x5sa1
        complexed with iod
      2. 1416153Domain d3bs9b_: 3bs9 B: [172806]
        automated match to d1x5sa1
        complexed with iod
    6. Domains for 3hi9:
      1. 1416136Domain d3hi9a_: 3hi9 A: [211068]
        automated match to d1oo0b_
      2. 1416137Domain d3hi9b_: 3hi9 B: [211069]
        automated match to d1oo0b_
      3. 1416138Domain d3hi9c_: 3hi9 C: [211070]
        automated match to d1oo0b_
      4. 1416139Domain d3hi9d_: 3hi9 D: [211071]
        automated match to d1oo0b_
    7. Domains for 3r27:
      1. 1416154Domain d3r27a_: 3r27 A: [200430]
        automated match to d3r27b_
        complexed with gol
      2. 1416155Domain d3r27b_: 3r27 B: [196174]
        automated match to d1wexa_
        complexed with gol
    8. Domain for 3ucg:
    9. Domain for 3ue2:
    10. Domain for 3us5:
    11. Domain for 4a8x:
    12. Domains for 4cko:
      1. 1416145Domain d4ckob2: 4cko B:445-531 [236314]
        Other proteins in same PDB: d4ckoa1, d4ckob1, d4ckoc1, d4ckod1, d4ckoe1, d4ckof1, d4ckog1, d4ckoh1
        automated match to d2adca2
        complexed with cl, zn
      2. 1416146Domain d4ckoc2: 4cko C:445-531 [236317]
        Other proteins in same PDB: d4ckoa1, d4ckob1, d4ckoc1, d4ckod1, d4ckoe1, d4ckof1, d4ckog1, d4ckoh1
        automated match to d2adca2
        complexed with cl, zn
      3. 1416147Domain d4ckod2: 4cko D:445-531 [236315]
        Other proteins in same PDB: d4ckoa1, d4ckob1, d4ckoc1, d4ckod1, d4ckoe1, d4ckof1, d4ckog1, d4ckoh1
        automated match to d2adca2
        complexed with cl, zn
      4. 1416148Domain d4ckoe2: 4cko E:445-531 [236319]
        Other proteins in same PDB: d4ckoa1, d4ckob1, d4ckoc1, d4ckod1, d4ckoe1, d4ckof1, d4ckog1, d4ckoh1
        automated match to d2adca2
        complexed with cl, zn
      5. 1416149Domain d4ckof2: 4cko F:445-531 [236320]
        Other proteins in same PDB: d4ckoa1, d4ckob1, d4ckoc1, d4ckod1, d4ckoe1, d4ckof1, d4ckog1, d4ckoh1
        automated match to d2adca2
        complexed with cl, zn
      6. 1416150Domain d4ckog2: 4cko G:445-531 [236318]
        Other proteins in same PDB: d4ckoa1, d4ckob1, d4ckoc1, d4ckod1, d4ckoe1, d4ckof1, d4ckog1, d4ckoh1
        automated match to d2adca2
        complexed with cl, zn
      7. 1416151Domain d4ckoh2: 4cko H:445-531 [236316]
        Other proteins in same PDB: d4ckoa1, d4ckob1, d4ckoc1, d4ckod1, d4ckoe1, d4ckof1, d4ckog1, d4ckoh1
        automated match to d2adca2
        complexed with cl, zn
    13. Domains for 4cq1:
      1. 1416122Domain d4cq1a2: 4cq1 A:445-531 [237006]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      2. 1416123Domain d4cq1b2: 4cq1 B:445-531 [237000]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      3. 1416124Domain d4cq1c2: 4cq1 C:445-531 [237001]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      4. 1416125Domain d4cq1d2: 4cq1 D:445-531 [237005]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      5. 1416126Domain d4cq1e2: 4cq1 E:445-531 [237004]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      6. 1416127Domain d4cq1f2: 4cq1 F:445-531 [237003]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      7. 1416128Domain d4cq1g2: 4cq1 G:445-531 [236999]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      8. 1416129Domain d4cq1h2: 4cq1 H:445-531 [237002]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
    14. Domains for 4ed5:
      1. 1416140Domain d4ed5a1: 4ed5 A:18-99 [234372]
        automated match to d1fxla1
        protein/RNA complex; complexed with edo, gol, m2m
      2. 1416141Domain d4ed5a2: 4ed5 A:100-185 [234388]
        automated match to d1fxla2
        protein/RNA complex; complexed with edo, gol, m2m
      3. 1416142Domain d4ed5b1: 4ed5 B:18-99 [234373]
        automated match to d1fxla1
        protein/RNA complex; complexed with edo, gol, m2m
      4. 1416143Domain d4ed5b2: 4ed5 B:100-186 [234387]
        automated match to d1fxla2
        protein/RNA complex; complexed with edo, gol, m2m
    15. Domains for 4egl:
      1. 1416162Domain d4egla1: 4egl A:18-99 [234378]
        automated match to d1fxla1
        complexed with gol, so4
      2. 1416163Domain d4egla2: 4egl A:100-184 [234389]
        automated match to d1fxla2
        complexed with gol, so4
    16. Domain for 4f25:
    17. Domain for 4f26:
    18. Domains for 4fxv:
      1. 1416131Domain d4fxva_: 4fxv A: [221592]
        automated match to d2cpja1
      2. 1416132Domain d4fxvb_: 4fxv B: [221593]
        automated match to d2cpja1
      3. 1416133Domain d4fxvc_: 4fxv C: [221594]
        automated match to d2cpja1
      4. 1416134Domain d4fxvd_: 4fxv D: [221595]
        automated match to d2cpja1
  3. 1416164Mouse (Mus musculus) [TaxId:10090] [226227] (1 PDB entry)

More info for Protein automated matches from d.58.7.0: automated matches

Timeline for Protein automated matches from d.58.7.0: automated matches: